Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46667 * 2 1 4 4 O 1.45205 * 109.46994 * 180.02562 * 3 2 1 5 5 C 1.34707 * 116.99967 * 180.02562 * 4 3 2 6 6 O 1.21470 * 120.00119 * 359.97438 * 5 4 3 7 7 C 1.47726 * 119.99898 * 179.97438 * 5 4 3 8 8 C 1.39631 * 120.15056 * 179.97438 * 7 5 4 9 9 C 1.37949 * 119.84699 * 180.29879 * 8 7 5 10 10 C 1.38371 * 120.14838 * 359.44563 * 9 8 7 11 11 S 1.76202 * 119.84577 * 180.27942 * 10 9 8 12 12 O 1.42101 * 106.40152 * 23.81802 * 11 10 9 13 13 O 1.42101 * 106.40084 * 156.73924 * 11 10 9 14 14 N 1.65600 * 107.21783 * 270.28018 * 11 10 9 15 15 C 1.36931 * 120.00481 * 90.00205 * 14 11 10 16 16 H 1.08007 * 119.99451 * 326.59653 * 15 14 11 17 17 C 1.38809 * 120.00488 * 146.59407 * 15 14 11 18 18 N 1.31619 * 120.00003 * 336.11247 * 17 15 14 19 19 Si 1.86798 * 119.99983 * 156.10514 * 17 15 14 20 20 H 1.48497 * 109.47172 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46942 * 120.00264 * 19 17 15 22 22 H 1.48499 * 109.47166 * 240.00411 * 19 17 15 23 23 C 1.46503 * 119.99723 * 270.00317 * 14 11 10 24 24 C 1.52990 * 109.47300 * 95.97416 * 23 14 11 25 25 C 1.38363 * 120.30533 * 0.56040 * 10 9 8 26 26 C 1.37950 * 120.15001 * 359.71860 * 25 10 9 27 27 H 1.09000 * 109.47957 * 299.99999 * 1 2 3 28 28 H 1.09005 * 109.47360 * 60.00262 * 1 2 3 29 29 H 1.09008 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47063 * 240.00111 * 2 1 3 31 31 H 1.08999 * 109.47160 * 119.99364 * 2 1 3 32 32 H 1.08997 * 109.47289 * 60.00249 * 3 2 1 33 33 H 1.08996 * 109.47489 * 299.99282 * 3 2 1 34 34 H 1.07993 * 120.07784 * 0.03128 * 8 7 5 35 35 H 1.07998 * 119.92201 * 179.70279 * 9 8 7 36 36 H 0.96998 * 120.00153 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.47210 * 215.97629 * 23 14 11 38 38 H 1.09002 * 109.47022 * 335.96970 * 23 14 11 39 39 H 1.09000 * 109.47065 * 299.99717 * 24 23 14 40 40 H 1.09002 * 109.47448 * 59.99814 * 24 23 14 41 41 H 1.09009 * 109.47080 * 179.97438 * 24 23 14 42 42 H 1.07997 * 119.92853 * 179.70065 * 25 10 9 43 43 H 1.07997 * 120.07491 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 8 3.4919 1.4426 -0.0006 5 6 4.1034 2.6429 -0.0002 6 8 3.4418 3.6616 0.0003 7 6 5.5786 2.7203 -0.0002 8 6 6.2157 3.9628 -0.0002 9 6 7.5937 4.0277 -0.0065 10 6 8.3442 2.8653 -0.0011 11 16 10.1038 2.9576 -0.0017 12 8 10.4392 4.2266 0.5429 13 8 10.5702 1.7305 0.5424 14 7 10.5928 2.9836 -1.5836 15 6 10.7329 4.1785 -2.2375 16 1 10.0767 5.0033 -2.0015 17 6 11.7181 4.3298 -3.2035 18 7 12.7852 3.5597 -3.1815 19 14 11.5294 5.6264 -4.5349 20 1 10.2506 6.3552 -4.3384 21 1 12.6616 6.5842 -4.4571 22 1 11.5264 4.9708 -5.8674 23 6 10.8755 1.7280 -2.2836 24 6 9.6398 1.2963 -3.0756 25 6 7.7194 1.6308 -0.0011 26 6 6.3422 1.5512 -0.0006 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.6311 4.8708 0.0002 35 1 8.0877 4.9881 -0.0114 36 1 13.4735 3.6651 -3.8567 37 1 11.7124 1.8733 -2.9667 38 1 11.1294 0.9562 -1.5570 39 1 8.8029 1.1510 -2.3926 40 1 9.3859 2.0682 -3.8022 41 1 9.8503 0.3623 -3.5968 42 1 8.3112 0.7274 -0.0018 43 1 5.8558 0.5870 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069115211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = -132.214272 kcal Electronic energy + Delta-G solvation = -27676.295672 eV Core-core repulsion = 23620.968192 eV Total energy + Delta-G solvation = -4055.327480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.75186 -38.78369 -36.88106 -36.24011 -35.92360 -34.76338 -34.24125 -31.77451 -31.57229 -31.05359 -29.26964 -27.28165 -24.67352 -24.54576 -22.75525 -21.94790 -21.69510 -21.14312 -18.70434 -18.23871 -17.70916 -17.18774 -16.91757 -16.55319 -16.25952 -15.28070 -15.08962 -14.82463 -14.72732 -14.31829 -14.19982 -13.56396 -13.45786 -13.33057 -13.18005 -12.87049 -12.78842 -12.68930 -12.50523 -12.31336 -11.97273 -11.58276 -11.56545 -11.35750 -11.23664 -11.08079 -11.00342 -10.94869 -10.89459 -10.80378 -10.79146 -10.42514 -10.27279 -10.20189 -9.86354 -9.36062 -9.09632 -9.01763 -7.77967 -6.31321 -3.99192 0.32209 1.33988 1.38984 2.28913 2.33995 3.17202 3.26682 3.30626 3.56531 4.09476 4.29419 4.41087 4.47726 4.53175 4.66210 4.70917 4.83245 4.89340 4.99341 5.01756 5.07371 5.19715 5.21265 5.36612 5.52721 5.59356 5.63154 5.68874 5.71811 5.95872 5.99224 6.04540 6.12530 6.20673 6.22363 6.30530 6.33124 6.55280 6.77200 6.89369 7.25655 7.37537 7.51278 7.74576 8.37595 8.94935 9.32543 10.70068 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.002923 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.613511 B = 9576.568531 C = 9901.071586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.066 3.934 4 O -0.352 6.352 5 C 0.511 3.489 6 O -0.504 6.504 7 C -0.093 4.093 8 C -0.078 4.078 9 C -0.030 4.030 10 C -0.617 4.617 11 S 2.624 3.376 12 O -0.967 6.967 13 O -0.992 6.992 14 N -0.839 5.839 15 C -0.283 4.283 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.854 5.854 19 Si 0.915 3.085 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.109 3.891 24 C -0.164 4.164 25 C -0.039 4.039 26 C -0.087 4.087 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.268 0.732 37 H 0.117 0.883 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.146 0.854 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.677 -6.883 2.407 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.008 4.008 4 O -0.269 6.269 5 C 0.356 3.644 6 O -0.393 6.393 7 C -0.094 4.094 8 C -0.097 4.097 9 C -0.049 4.049 10 C -0.699 4.699 11 S 2.720 3.280 12 O -0.957 6.957 13 O -0.982 6.982 14 N -0.671 5.671 15 C -0.419 4.419 16 H 0.111 0.889 17 C -0.169 4.169 18 N -0.494 5.494 19 Si 0.742 3.258 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.018 4.018 24 C -0.223 4.223 25 C -0.058 4.058 26 C -0.106 4.106 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.164 0.836 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.329 -6.651 3.198 18.835 hybrid contribution -0.935 0.641 -0.949 1.478 sum -18.264 -6.011 2.249 19.359 Atomic orbital electron populations 1.21692 0.94085 1.02607 1.02358 1.21527 0.96165 0.94585 1.03953 1.23176 0.76004 0.98796 1.02810 1.86535 1.23567 1.32646 1.84127 1.21239 0.89095 0.81387 0.72646 1.90830 1.66771 1.36041 1.45615 1.19280 0.88662 0.95448 1.05996 1.21350 0.94752 0.96674 0.96881 1.20964 0.93059 0.98238 0.92600 1.31978 1.30173 0.98647 1.09081 1.05244 0.73717 0.73130 0.75940 1.93452 1.81124 1.42727 1.78355 1.93423 1.78172 1.47277 1.79331 1.52634 1.80402 1.10461 1.23594 1.19149 1.14230 0.90988 1.17532 0.88924 1.25329 0.93334 0.97774 1.00445 1.69974 1.06285 1.39190 1.33905 0.86064 0.78685 0.80449 0.80647 1.19146 1.20745 1.20607 1.21409 0.99017 0.84019 0.97335 1.22206 0.99069 1.00284 1.00734 1.20943 0.94475 0.96894 0.93465 1.21503 0.93924 0.97861 0.97300 0.92301 0.92273 0.91575 0.90583 0.90635 0.91079 0.91037 0.84001 0.83176 0.92200 0.86586 0.92128 0.94421 0.92199 0.93298 0.83613 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.83 6.31 -26.73 -0.17 -1.00 16 3 C 0.07 0.60 5.48 37.16 0.20 0.81 16 4 O -0.35 -4.15 9.47 -40.51 -0.38 -4.54 16 5 C 0.51 7.12 7.90 34.61 0.27 7.40 16 6 O -0.50 -7.92 16.14 -19.24 -0.31 -8.23 16 7 C -0.09 -1.34 5.87 -104.98 -0.62 -1.95 16 8 C -0.08 -1.16 9.60 -39.17 -0.38 -1.54 16 9 C -0.03 -0.50 9.50 -39.64 -0.38 -0.87 16 10 C -0.62 -11.13 5.98 -39.49 -0.24 -11.37 16 11 S 2.62 57.88 5.65 -107.50 -0.61 57.27 16 12 O -0.97 -23.89 16.49 -57.17 -0.94 -24.83 16 13 O -0.99 -22.99 15.81 -57.17 -0.90 -23.89 16 14 N -0.84 -19.53 2.85 -59.91 -0.17 -19.70 16 15 C -0.28 -7.01 8.87 -15.06 -0.13 -7.14 16 16 H 0.09 2.22 7.94 -52.48 -0.42 1.81 16 17 C 0.04 0.97 4.98 -17.43 -0.09 0.88 16 18 N -0.85 -22.11 11.27 55.49 0.63 -21.48 16 19 Si 0.92 19.38 29.62 -169.99 -5.03 14.34 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C 0.11 2.35 6.01 -4.05 -0.02 2.32 16 24 C -0.16 -2.93 10.20 37.15 0.38 -2.55 16 25 C -0.04 -0.61 8.50 -39.64 -0.34 -0.95 16 26 C -0.09 -1.19 9.62 -39.17 -0.38 -1.56 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.14 1.90 7.65 -52.49 -0.40 1.50 16 35 H 0.15 2.43 7.61 -52.49 -0.40 2.03 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.12 2.74 5.31 -51.93 -0.28 2.47 16 38 H 0.06 1.26 6.90 -51.93 -0.36 0.90 16 39 H 0.04 0.61 7.11 -51.93 -0.37 0.24 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.15 2.11 7.60 -52.49 -0.40 1.71 16 43 H 0.14 1.54 7.61 -52.49 -0.40 1.14 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -30.87 376.66 -9.52 -40.38 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.96 Total: 2.93 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.51 Total: -17.94 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.45 Total: -41.18 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -2.54 Total: -61.49 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.34 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.61 Total: 57.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.87 -9.52 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069115211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.830 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds