Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46667 * 2 1 4 4 O 1.45205 * 109.46994 * 180.02562 * 3 2 1 5 5 C 1.34707 * 116.99967 * 180.02562 * 4 3 2 6 6 O 1.21470 * 120.00119 * 359.97438 * 5 4 3 7 7 C 1.47726 * 119.99898 * 179.97438 * 5 4 3 8 8 C 1.39631 * 120.15056 * 179.97438 * 7 5 4 9 9 C 1.37949 * 119.84699 * 180.29879 * 8 7 5 10 10 C 1.38371 * 120.14838 * 359.44563 * 9 8 7 11 11 S 1.76202 * 119.84577 * 180.27942 * 10 9 8 12 12 O 1.42101 * 106.40152 * 23.81802 * 11 10 9 13 13 O 1.42101 * 106.40084 * 156.73924 * 11 10 9 14 14 N 1.65600 * 107.21783 * 270.28018 * 11 10 9 15 15 C 1.36931 * 120.00481 * 90.00205 * 14 11 10 16 16 H 1.08007 * 119.99451 * 326.59653 * 15 14 11 17 17 C 1.38809 * 120.00488 * 146.59407 * 15 14 11 18 18 N 1.31619 * 120.00003 * 336.11247 * 17 15 14 19 19 Si 1.86798 * 119.99983 * 156.10514 * 17 15 14 20 20 H 1.48497 * 109.47172 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46942 * 120.00264 * 19 17 15 22 22 H 1.48499 * 109.47166 * 240.00411 * 19 17 15 23 23 C 1.46503 * 119.99723 * 270.00317 * 14 11 10 24 24 C 1.52990 * 109.47300 * 95.97416 * 23 14 11 25 25 C 1.38363 * 120.30533 * 0.56040 * 10 9 8 26 26 C 1.37950 * 120.15001 * 359.71860 * 25 10 9 27 27 H 1.09000 * 109.47957 * 299.99999 * 1 2 3 28 28 H 1.09005 * 109.47360 * 60.00262 * 1 2 3 29 29 H 1.09008 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47063 * 240.00111 * 2 1 3 31 31 H 1.08999 * 109.47160 * 119.99364 * 2 1 3 32 32 H 1.08997 * 109.47289 * 60.00249 * 3 2 1 33 33 H 1.08996 * 109.47489 * 299.99282 * 3 2 1 34 34 H 1.07993 * 120.07784 * 0.03128 * 8 7 5 35 35 H 1.07998 * 119.92201 * 179.70279 * 9 8 7 36 36 H 0.96998 * 120.00153 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.47210 * 215.97629 * 23 14 11 38 38 H 1.09002 * 109.47022 * 335.96970 * 23 14 11 39 39 H 1.09000 * 109.47065 * 299.99717 * 24 23 14 40 40 H 1.09002 * 109.47448 * 59.99814 * 24 23 14 41 41 H 1.09009 * 109.47080 * 179.97438 * 24 23 14 42 42 H 1.07997 * 119.92853 * 179.70065 * 25 10 9 43 43 H 1.07997 * 120.07491 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 8 3.4919 1.4426 -0.0006 5 6 4.1034 2.6429 -0.0002 6 8 3.4418 3.6616 0.0003 7 6 5.5786 2.7203 -0.0002 8 6 6.2157 3.9628 -0.0002 9 6 7.5937 4.0277 -0.0065 10 6 8.3442 2.8653 -0.0011 11 16 10.1038 2.9576 -0.0017 12 8 10.4392 4.2266 0.5429 13 8 10.5702 1.7305 0.5424 14 7 10.5928 2.9836 -1.5836 15 6 10.7329 4.1785 -2.2375 16 1 10.0767 5.0033 -2.0015 17 6 11.7181 4.3298 -3.2035 18 7 12.7852 3.5597 -3.1815 19 14 11.5294 5.6264 -4.5349 20 1 10.2506 6.3552 -4.3384 21 1 12.6616 6.5842 -4.4571 22 1 11.5264 4.9708 -5.8674 23 6 10.8755 1.7280 -2.2836 24 6 9.6398 1.2963 -3.0756 25 6 7.7194 1.6308 -0.0011 26 6 6.3422 1.5512 -0.0006 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.6311 4.8708 0.0002 35 1 8.0877 4.9881 -0.0114 36 1 13.4735 3.6651 -3.8567 37 1 11.7124 1.8733 -2.9667 38 1 11.1294 0.9562 -1.5570 39 1 8.8029 1.1510 -2.3926 40 1 9.3859 2.0682 -3.8022 41 1 9.8503 0.3623 -3.5968 42 1 8.3112 0.7274 -0.0018 43 1 5.8558 0.5870 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069115211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = -149.949799 kcal Electronic energy + Delta-G solvation = -27677.064742 eV Core-core repulsion = 23620.968192 eV Total energy + Delta-G solvation = -4056.096550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.81130 -39.96102 -38.07172 -37.87401 -37.69020 -36.61640 -34.84978 -33.55566 -32.83443 -32.27481 -30.92231 -27.99930 -26.49229 -25.67218 -23.95027 -23.34665 -22.52145 -22.26847 -20.40547 -19.53807 -19.09222 -18.54478 -18.11468 -17.91206 -17.78818 -16.78196 -16.42469 -15.94662 -15.82180 -15.80726 -15.29829 -15.20360 -14.71470 -14.47051 -14.30939 -14.26794 -13.98494 -13.77693 -13.59772 -13.56328 -13.12307 -13.09687 -12.95676 -12.84240 -12.66143 -12.56951 -12.41556 -12.18921 -12.15407 -12.08800 -12.00879 -11.92721 -11.68522 -11.51850 -11.49694 -10.93974 -10.61107 -10.21610 -9.60023 -8.16675 -5.90734 -0.92814 -0.30453 0.14059 1.13098 1.38116 1.48779 1.52914 1.64377 2.25278 2.44729 2.69374 2.91280 3.17938 3.35506 3.42117 3.74810 3.76112 3.89854 3.89968 4.14402 4.24126 4.26880 4.41857 4.44576 4.48114 4.50935 4.71796 4.76160 4.77321 4.78851 4.84976 4.93724 4.99801 5.03986 5.09241 5.16475 5.17133 5.32770 5.40014 5.52368 5.55610 5.66206 5.98349 6.47414 6.52395 7.09430 7.45916 8.84982 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.002923 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.613511 B = 9576.568531 C = 9901.071586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.058 3.942 4 O -0.348 6.348 5 C 0.517 3.483 6 O -0.524 6.524 7 C -0.090 4.090 8 C -0.075 4.075 9 C -0.040 4.040 10 C -0.627 4.627 11 S 2.637 3.363 12 O -1.003 7.003 13 O -1.010 7.010 14 N -0.851 5.851 15 C -0.304 4.304 16 H 0.092 0.908 17 C -0.002 4.002 18 N -0.889 5.889 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.102 3.898 24 C -0.154 4.154 25 C -0.041 4.041 26 C -0.070 4.070 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.269 0.731 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.159 0.841 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.575 -8.125 2.065 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.015 4.015 4 O -0.264 6.264 5 C 0.363 3.637 6 O -0.415 6.415 7 C -0.091 4.091 8 C -0.094 4.094 9 C -0.059 4.059 10 C -0.715 4.715 11 S 2.737 3.263 12 O -0.993 6.993 13 O -0.999 6.999 14 N -0.683 5.683 15 C -0.439 4.439 16 H 0.110 0.890 17 C -0.207 4.207 18 N -0.529 5.529 19 Si 0.797 3.203 20 H -0.183 1.183 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.025 4.025 24 C -0.213 4.213 25 C -0.060 4.060 26 C -0.088 4.088 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.164 0.836 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.176 0.824 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.169 -7.901 2.830 21.845 hybrid contribution -0.224 0.928 -0.728 1.200 sum -20.392 -6.973 2.102 21.654 Atomic orbital electron populations 1.21701 0.92906 1.03428 1.02573 1.21544 0.97034 0.92808 1.04294 1.23493 0.74367 1.00631 1.02976 1.86525 1.25163 1.31255 1.83443 1.21073 0.88734 0.81727 0.72210 1.90830 1.67115 1.36891 1.46619 1.19479 0.89383 0.95503 1.04778 1.21460 0.93902 0.97833 0.96233 1.20992 0.93943 0.97740 0.93245 1.31261 1.27039 1.00524 1.12653 1.04061 0.75139 0.72059 0.74991 1.93406 1.82970 1.44095 1.78858 1.93396 1.79802 1.47379 1.79358 1.52691 1.80739 1.10649 1.24250 1.19325 1.14568 0.91385 1.18628 0.89034 1.26059 0.92952 0.99672 1.01987 1.70072 1.07038 1.41086 1.34738 0.85193 0.78554 0.78195 0.78368 1.18315 1.21217 1.19926 1.21460 1.00203 0.83531 0.97264 1.22102 0.97764 1.01037 1.00431 1.21156 0.95618 0.96196 0.93068 1.21793 0.92810 0.99111 0.95117 0.92081 0.92132 0.90458 0.90292 0.90245 0.90904 0.90990 0.82582 0.83557 0.92130 0.88807 0.92100 0.92774 0.93245 0.90653 0.82379 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.12 -1.25 6.31 30.59 0.19 -1.06 16 3 C 0.06 0.92 5.48 71.98 0.39 1.31 16 4 O -0.35 -7.09 9.47 -56.17 -0.53 -7.62 16 5 C 0.52 12.96 7.90 70.33 0.56 13.52 16 6 O -0.52 -15.33 16.14 19.93 0.32 -15.01 16 7 C -0.09 -2.35 5.87 -20.10 -0.12 -2.46 16 8 C -0.08 -2.12 9.60 22.54 0.22 -1.90 16 9 C -0.04 -1.31 9.50 22.23 0.21 -1.10 16 10 C -0.63 -22.13 5.98 22.33 0.13 -22.00 16 11 S 2.64 118.05 5.65 -56.49 -0.32 117.74 16 12 O -1.00 -51.10 16.49 -128.00 -2.11 -53.21 16 13 O -1.01 -47.11 15.81 -128.00 -2.02 -49.14 16 14 N -0.85 -40.33 2.85 -343.46 -0.98 -41.30 16 15 C -0.30 -15.41 8.87 84.03 0.75 -14.67 16 16 H 0.09 4.52 7.94 -2.91 -0.02 4.49 16 17 C 0.00 -0.12 4.98 84.86 0.42 0.30 16 18 N -0.89 -47.31 11.27 21.65 0.24 -47.06 16 19 Si 0.97 40.15 29.62 68.60 2.03 42.19 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 C 0.10 4.43 6.01 86.38 0.52 4.94 16 24 C -0.15 -5.32 10.20 71.98 0.73 -4.59 16 25 C -0.04 -1.20 8.50 22.23 0.19 -1.01 16 26 C -0.07 -1.66 9.62 22.54 0.22 -1.44 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.16 3.90 7.65 -2.91 -0.02 3.88 16 35 H 0.15 4.81 7.61 -2.91 -0.02 4.79 16 36 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 37 H 0.09 4.56 5.31 -2.39 -0.01 4.55 16 38 H 0.06 2.57 6.90 -2.39 -0.02 2.55 16 39 H 0.05 1.65 7.11 -2.39 -0.02 1.64 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.16 4.16 7.60 -2.91 -0.02 4.14 16 43 H 0.18 2.97 7.61 -2.91 -0.02 2.95 16 Total: -1.00 -67.10 376.66 2.78 -64.32 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.02 Total: 19.68 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 5.13 Total: -30.57 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -0.73 Total: -88.37 kcal Atomic # 8 Polarization: -120.64 SS G_CDS: -4.34 Total: -124.98 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: 118.05 SS G_CDS: -0.32 Total: 117.74 kcal Total: -67.10 2.78 -64.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069115211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.625 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds