Wall clock time and date at job start Sat Apr 11 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.52992 * 109.46951 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47669 * 300.00133 * 4 3 2 6 6 N 1.46497 * 109.47358 * 179.97438 * 4 3 2 7 7 S 1.65596 * 120.00544 * 173.39524 * 6 4 3 8 8 O 1.42099 * 106.40415 * 179.59943 * 7 6 4 9 9 O 1.42103 * 106.40176 * 312.51886 * 7 6 4 10 10 C 1.76206 * 107.21737 * 66.05653 * 7 6 4 11 11 C 1.37632 * 120.12891 * 246.98734 * 10 7 6 12 12 C 1.38610 * 120.24894 * 180.02562 * 11 10 7 13 13 C 1.38657 * 120.50185 * 359.97438 * 12 11 10 14 14 C 1.37601 * 120.24680 * 0.02562 * 13 12 11 15 15 C 1.40701 * 120.12361 * 66.71764 * 10 7 6 16 16 C 1.41389 * 120.24548 * 359.97438 * 15 10 7 17 17 H 1.08002 * 120.00122 * 325.30437 * 16 15 10 18 18 C 1.39944 * 120.00120 * 145.30338 * 16 15 10 19 19 N 1.30827 * 119.99955 * 353.57768 * 18 16 15 20 20 Si 1.86800 * 120.00051 * 173.57649 * 18 16 15 21 21 H 1.48501 * 109.47418 * 5.00808 * 20 18 16 22 22 H 1.48504 * 109.47149 * 125.00601 * 20 18 16 23 23 H 1.48500 * 109.47283 * 245.00448 * 20 18 16 24 24 C 1.50709 * 109.47196 * 60.00313 * 4 3 2 25 25 O 1.20827 * 119.99998 * 261.00677 * 24 4 3 26 26 O 1.34227 * 119.99855 * 81.00179 * 24 4 3 27 27 H 1.08992 * 109.47504 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46940 * 300.00071 * 1 2 3 29 29 H 1.09006 * 109.46894 * 59.99304 * 1 2 3 30 30 H 1.09001 * 109.46717 * 240.00370 * 2 1 3 31 31 H 1.08999 * 109.46718 * 120.00343 * 2 1 3 32 32 H 1.08998 * 109.46613 * 60.00186 * 3 2 1 33 33 H 1.08996 * 109.47085 * 300.00385 * 3 2 1 34 34 H 1.08996 * 109.47034 * 290.22075 * 5 4 3 35 35 H 1.09006 * 109.46859 * 50.21746 * 5 4 3 36 36 H 1.08997 * 109.47685 * 170.21305 * 5 4 3 37 37 H 0.97006 * 120.00070 * 353.12571 * 6 4 3 38 38 H 1.08007 * 119.87383 * 0.02562 * 11 10 7 39 39 H 1.07999 * 119.75083 * 179.97438 * 12 11 10 40 40 H 1.07995 * 119.87442 * 179.97438 * 13 12 11 41 41 H 1.07993 * 120.12783 * 179.97438 * 14 13 12 42 42 H 0.97000 * 120.00167 * 179.97438 * 19 18 16 43 43 H 0.96695 * 116.99868 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0796 0.7214 1.2501 6 7 4.0584 2.8236 0.0000 7 16 5.6775 3.1295 0.1655 8 8 5.8260 4.5418 0.1168 9 8 6.1258 2.3380 1.2572 10 6 6.4775 2.4951 -1.2706 11 6 7.3335 1.4223 -1.1675 12 6 7.9645 0.9216 -2.2955 13 6 7.7417 1.4935 -3.5389 14 6 6.8900 2.5668 -3.6655 15 6 6.2393 3.0799 -2.5280 16 6 5.3572 4.1785 -2.6470 17 1 4.4849 4.2416 -2.0134 18 6 5.6145 5.1840 -3.5857 19 7 6.7327 5.1744 -4.2647 20 14 4.3611 6.5397 -3.8693 21 1 3.2460 6.3938 -2.8996 22 1 5.0109 7.8618 -3.6812 23 1 3.8302 6.4416 -5.2527 24 6 4.0729 0.7319 -1.2296 25 8 4.4284 -0.4207 -1.1586 26 8 4.1257 1.3794 -2.4042 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.8655 1.3261 2.1313 35 1 3.5806 -0.2435 1.3417 36 1 5.1555 0.5675 1.1676 37 1 3.4338 3.5589 -0.1012 38 1 7.5141 0.9688 -0.2041 39 1 8.6350 0.0797 -2.2053 40 1 8.2390 1.0955 -4.4109 41 1 6.7181 3.0109 -4.6348 42 1 6.9109 5.8711 -4.9156 43 1 4.4557 0.8823 -3.1650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605204659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:18 Heat of formation + Delta-G solvation = -149.978787 kcal Electronic energy + Delta-G solvation = -30453.404261 eV Core-core repulsion = 26397.306454 eV Total energy + Delta-G solvation = -4056.097807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.27806 -37.62791 -37.01488 -36.22421 -35.48803 -34.89391 -33.85874 -33.61672 -30.22810 -29.69351 -29.47663 -26.84090 -25.50859 -24.32523 -22.10344 -21.57286 -21.13215 -19.69082 -18.65920 -17.69488 -17.61532 -17.03586 -16.72435 -16.19688 -15.39844 -15.28416 -15.20471 -14.47253 -14.34452 -14.01382 -13.65049 -13.34363 -13.29817 -13.13572 -12.74663 -12.67678 -12.34619 -12.09730 -11.87553 -11.83458 -11.62933 -11.47562 -11.29355 -11.22208 -11.17495 -11.09039 -10.95764 -10.81981 -10.67759 -10.58581 -10.48031 -10.45941 -10.23811 -9.87226 -9.51987 -9.40820 -8.94501 -8.04507 -7.51316 -6.96962 -4.72476 1.42225 2.28074 2.60430 2.73932 2.99714 3.05515 3.12376 3.41898 3.76185 3.81658 4.44531 4.58183 4.69255 4.82207 4.91755 5.08174 5.23963 5.36415 5.51591 5.56423 5.60397 5.64439 5.67572 5.84565 5.95634 6.01785 6.03363 6.12444 6.19219 6.22833 6.33067 6.40070 6.64984 6.80734 6.94082 7.04408 7.07530 7.30545 7.38363 7.50239 7.67351 7.79348 7.91945 8.29961 8.39720 8.56828 8.65125 9.97403 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.006138 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.349300 B = 4560.353734 C = 5197.213433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.116 4.116 4 C 0.201 3.799 5 C -0.167 4.167 6 N -1.106 6.106 7 S 2.690 3.310 8 O -0.958 6.958 9 O -0.990 6.990 10 C -0.773 4.773 11 C -0.002 4.002 12 C -0.245 4.245 13 C -0.078 4.078 14 C -0.156 4.156 15 C 0.210 3.790 16 C -0.438 4.438 17 H 0.087 0.913 18 C 0.080 3.920 19 N -0.786 5.786 20 Si 0.916 3.084 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.467 3.533 25 O -0.513 6.513 26 O -0.480 6.480 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.417 0.583 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.285 0.715 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 -5.246 3.201 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.154 4.154 4 C 0.109 3.891 5 C -0.225 4.225 6 N -0.863 5.863 7 S 2.789 3.211 8 O -0.948 6.948 9 O -0.981 6.981 10 C -0.869 4.869 11 C -0.022 4.022 12 C -0.265 4.265 13 C -0.097 4.097 14 C -0.176 4.176 15 C 0.205 3.795 16 C -0.467 4.467 17 H 0.105 0.895 18 C -0.140 4.140 19 N -0.410 5.410 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.197 1.197 24 C 0.307 3.693 25 O -0.400 6.400 26 O -0.289 6.289 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.251 0.749 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -9.592 -4.888 4.164 11.543 hybrid contribution -0.225 0.297 -1.627 1.669 sum -9.818 -4.590 2.537 11.131 Atomic orbital electron populations 1.21744 0.95370 1.01680 1.01876 1.21689 0.96152 0.95845 1.03278 1.21871 0.90586 0.98542 1.04424 1.19906 0.96505 0.81940 0.90731 1.22547 1.04955 1.00435 0.94566 1.55918 1.27843 1.11154 1.91353 1.01410 0.71838 0.73507 0.74333 1.93556 1.84200 1.29222 1.87838 1.93463 1.80523 1.71497 1.52601 1.29879 1.23269 1.17991 1.15791 1.20243 0.92409 0.92225 0.97347 1.20464 1.08130 1.04486 0.93427 1.20920 0.96787 0.96045 0.95907 1.21468 1.00643 0.96237 0.99232 1.16843 0.86866 0.87406 0.88340 1.19762 1.08188 1.02644 1.16149 0.89521 1.25907 0.95511 0.99334 0.93279 1.69766 1.21396 1.31694 1.18151 0.86112 0.80900 0.79940 0.79021 1.17905 1.19618 1.19670 1.23824 0.74428 0.85424 0.85650 1.90668 1.44688 1.18559 1.86133 1.84699 1.77671 1.47722 1.18815 0.92664 0.92606 0.92667 0.91621 0.90747 0.89465 0.89936 0.90391 0.90543 0.88660 0.74873 0.87719 0.88894 0.88932 0.86082 0.90393 0.73809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.41 5.34 -26.73 -0.14 -1.55 16 3 C -0.12 -1.33 4.38 -26.73 -0.12 -1.45 16 4 C 0.20 3.05 0.88 -132.97 -0.12 2.94 16 5 C -0.17 -2.54 6.64 37.16 0.25 -2.29 16 6 N -1.11 -18.57 4.58 -0.40 0.00 -18.57 16 7 S 2.69 57.50 4.92 -107.50 -0.53 56.97 16 8 O -0.96 -23.39 16.54 -57.17 -0.95 -24.34 16 9 O -0.99 -21.58 13.46 -57.17 -0.77 -22.35 16 10 C -0.77 -17.80 3.72 -38.87 -0.14 -17.94 16 11 C 0.00 -0.05 9.41 -39.67 -0.37 -0.42 16 12 C -0.24 -5.29 10.05 -39.29 -0.39 -5.68 16 13 C -0.08 -1.67 10.02 -39.66 -0.40 -2.07 16 14 C -0.16 -3.62 8.63 -38.87 -0.34 -3.95 16 15 C 0.21 5.01 3.58 -106.83 -0.38 4.62 16 16 C -0.44 -10.46 7.09 -37.74 -0.27 -10.73 16 17 H 0.09 1.95 6.13 -52.49 -0.32 1.62 16 18 C 0.08 1.87 5.30 -17.34 -0.09 1.78 16 19 N -0.79 -19.02 11.02 55.55 0.61 -18.41 16 20 Si 0.92 17.91 29.56 -169.99 -5.03 12.88 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 C 0.47 8.03 4.31 36.01 0.16 8.18 16 25 O -0.51 -9.70 16.59 -18.75 -0.31 -10.02 16 26 O -0.48 -8.23 10.00 -39.25 -0.39 -8.62 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.80 6.97 -51.93 -0.36 0.44 16 31 H 0.07 0.77 6.23 -51.93 -0.32 0.45 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.00 5.96 -51.93 -0.31 0.69 16 36 H 0.09 1.72 6.05 -51.93 -0.31 1.41 16 37 H 0.42 6.07 8.39 -34.46 -0.29 5.78 16 38 H 0.10 2.26 7.32 -52.48 -0.38 1.88 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.12 2.87 6.51 -52.49 -0.34 2.53 16 42 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 43 H 0.40 6.22 9.10 45.56 0.41 6.63 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -30.25 353.19 -8.78 -39.03 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -4.75 Total: 17.59 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: -1.99 Total: -29.49 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.61 Total: -36.99 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -2.42 Total: -65.32 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 57.50 SS G_CDS: -0.53 Total: 56.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.25 -8.78 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605204659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.945 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds