Wall clock time and date at job start Sat Apr 11 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.52992 * 109.46951 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47669 * 300.00133 * 4 3 2 6 6 N 1.46497 * 109.47358 * 179.97438 * 4 3 2 7 7 S 1.65596 * 120.00544 * 173.39524 * 6 4 3 8 8 O 1.42099 * 106.40415 * 179.59943 * 7 6 4 9 9 O 1.42103 * 106.40176 * 312.51886 * 7 6 4 10 10 C 1.76206 * 107.21737 * 66.05653 * 7 6 4 11 11 C 1.37632 * 120.12891 * 246.98734 * 10 7 6 12 12 C 1.38610 * 120.24894 * 180.02562 * 11 10 7 13 13 C 1.38657 * 120.50185 * 359.97438 * 12 11 10 14 14 C 1.37601 * 120.24680 * 0.02562 * 13 12 11 15 15 C 1.40701 * 120.12361 * 66.71764 * 10 7 6 16 16 C 1.41389 * 120.24548 * 359.97438 * 15 10 7 17 17 H 1.08002 * 120.00122 * 325.30437 * 16 15 10 18 18 C 1.39944 * 120.00120 * 145.30338 * 16 15 10 19 19 N 1.30827 * 119.99955 * 353.57768 * 18 16 15 20 20 Si 1.86800 * 120.00051 * 173.57649 * 18 16 15 21 21 H 1.48501 * 109.47418 * 5.00808 * 20 18 16 22 22 H 1.48504 * 109.47149 * 125.00601 * 20 18 16 23 23 H 1.48500 * 109.47283 * 245.00448 * 20 18 16 24 24 C 1.50709 * 109.47196 * 60.00313 * 4 3 2 25 25 O 1.20827 * 119.99998 * 261.00677 * 24 4 3 26 26 O 1.34227 * 119.99855 * 81.00179 * 24 4 3 27 27 H 1.08992 * 109.47504 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46940 * 300.00071 * 1 2 3 29 29 H 1.09006 * 109.46894 * 59.99304 * 1 2 3 30 30 H 1.09001 * 109.46717 * 240.00370 * 2 1 3 31 31 H 1.08999 * 109.46718 * 120.00343 * 2 1 3 32 32 H 1.08998 * 109.46613 * 60.00186 * 3 2 1 33 33 H 1.08996 * 109.47085 * 300.00385 * 3 2 1 34 34 H 1.08996 * 109.47034 * 290.22075 * 5 4 3 35 35 H 1.09006 * 109.46859 * 50.21746 * 5 4 3 36 36 H 1.08997 * 109.47685 * 170.21305 * 5 4 3 37 37 H 0.97006 * 120.00070 * 353.12571 * 6 4 3 38 38 H 1.08007 * 119.87383 * 0.02562 * 11 10 7 39 39 H 1.07999 * 119.75083 * 179.97438 * 12 11 10 40 40 H 1.07995 * 119.87442 * 179.97438 * 13 12 11 41 41 H 1.07993 * 120.12783 * 179.97438 * 14 13 12 42 42 H 0.97000 * 120.00167 * 179.97438 * 19 18 16 43 43 H 0.96695 * 116.99868 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0796 0.7214 1.2501 6 7 4.0584 2.8236 0.0000 7 16 5.6775 3.1295 0.1655 8 8 5.8260 4.5418 0.1168 9 8 6.1258 2.3380 1.2572 10 6 6.4775 2.4951 -1.2706 11 6 7.3335 1.4223 -1.1675 12 6 7.9645 0.9216 -2.2955 13 6 7.7417 1.4935 -3.5389 14 6 6.8900 2.5668 -3.6655 15 6 6.2393 3.0799 -2.5280 16 6 5.3572 4.1785 -2.6470 17 1 4.4849 4.2416 -2.0134 18 6 5.6145 5.1840 -3.5857 19 7 6.7327 5.1744 -4.2647 20 14 4.3611 6.5397 -3.8693 21 1 3.2460 6.3938 -2.8996 22 1 5.0109 7.8618 -3.6812 23 1 3.8302 6.4416 -5.2527 24 6 4.0729 0.7319 -1.2296 25 8 4.4284 -0.4207 -1.1586 26 8 4.1257 1.3794 -2.4042 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.8655 1.3261 2.1313 35 1 3.5806 -0.2435 1.3417 36 1 5.1555 0.5675 1.1676 37 1 3.4338 3.5589 -0.1012 38 1 7.5141 0.9688 -0.2041 39 1 8.6350 0.0797 -2.2053 40 1 8.2390 1.0955 -4.4109 41 1 6.7181 3.0109 -4.6348 42 1 6.9109 5.8711 -4.9156 43 1 4.4557 0.8823 -3.1650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605204659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:17 Heat of formation + Delta-G solvation = -170.288029 kcal Electronic energy + Delta-G solvation = -30454.284936 eV Core-core repulsion = 26397.306454 eV Total energy + Delta-G solvation = -4056.978482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60809 -39.35651 -38.37321 -37.84866 -36.88849 -36.67420 -35.57199 -34.66882 -31.97291 -31.37249 -30.78243 -27.83658 -27.27447 -25.55059 -23.47271 -22.90008 -22.88790 -20.91275 -20.23729 -19.43597 -19.03515 -18.57174 -18.14564 -17.83385 -17.03740 -16.60463 -16.43455 -16.03777 -15.97742 -15.27693 -15.07106 -14.92003 -14.61457 -14.44557 -14.38888 -13.97006 -13.70257 -13.39575 -13.28625 -13.11578 -12.97870 -12.91489 -12.84216 -12.80076 -12.77668 -12.48979 -12.35992 -12.27069 -12.09833 -12.07342 -11.75478 -11.59553 -11.54584 -11.45303 -11.17548 -11.05681 -10.45822 -9.79905 -9.29158 -8.70129 -6.52701 -0.23470 0.54172 1.00928 1.24478 1.41273 1.53279 1.55687 2.13685 2.21112 2.25068 2.70655 2.97000 3.49014 3.57763 3.70071 3.83009 4.01008 4.18183 4.25096 4.32461 4.46157 4.51744 4.61371 4.71099 4.75510 4.81907 4.90048 4.96853 5.03412 5.12918 5.18845 5.22727 5.30404 5.33730 5.41901 5.51140 5.56536 5.72119 5.74056 5.88177 6.02855 6.11656 6.15753 6.53471 6.79312 6.88813 7.05665 8.26847 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.006138 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.349300 B = 4560.353734 C = 5197.213433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C -0.111 4.111 4 C 0.197 3.803 5 C -0.170 4.170 6 N -1.092 6.092 7 S 2.706 3.294 8 O -0.992 6.992 9 O -0.998 6.998 10 C -0.787 4.787 11 C -0.016 4.016 12 C -0.248 4.248 13 C -0.075 4.075 14 C -0.172 4.172 15 C 0.199 3.801 16 C -0.460 4.460 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.819 5.819 20 Si 0.971 3.029 21 H -0.246 1.246 22 H -0.276 1.276 23 H -0.258 1.258 24 C 0.466 3.534 25 O -0.535 6.535 26 O -0.485 6.485 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.429 0.571 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.291 0.709 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.061 -5.371 3.693 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.150 4.150 4 C 0.107 3.893 5 C -0.228 4.228 6 N -0.853 5.853 7 S 2.803 3.197 8 O -0.982 6.982 9 O -0.988 6.988 10 C -0.881 4.881 11 C -0.036 4.036 12 C -0.268 4.268 13 C -0.094 4.094 14 C -0.192 4.192 15 C 0.194 3.806 16 C -0.489 4.489 17 H 0.112 0.888 18 C -0.178 4.178 19 N -0.444 5.444 20 Si 0.792 3.208 21 H -0.169 1.169 22 H -0.201 1.201 23 H -0.183 1.183 24 C 0.307 3.693 25 O -0.424 6.424 26 O -0.294 6.294 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.266 0.734 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -11.479 -5.019 4.638 13.359 hybrid contribution 0.416 0.216 -1.748 1.810 sum -11.063 -4.803 2.890 12.402 Atomic orbital electron populations 1.21717 0.93514 1.02381 1.02653 1.21684 0.97713 0.94944 1.02521 1.21967 0.87323 0.99600 1.06101 1.20207 0.99012 0.80388 0.89726 1.22580 1.03131 1.01967 0.95094 1.55490 1.26265 1.12575 1.90937 1.00808 0.72716 0.72436 0.73728 1.93506 1.85312 1.31272 1.88111 1.93461 1.81356 1.71340 1.52616 1.30125 1.23808 1.17874 1.16307 1.20443 0.92718 0.92499 0.97967 1.20777 1.07976 1.04920 0.93159 1.21186 0.96053 0.95257 0.96913 1.21476 1.01793 0.97112 0.98826 1.17018 0.87177 0.87678 0.88709 1.20006 1.08722 1.03160 1.17043 0.88846 1.26707 0.97003 1.01223 0.92833 1.69814 1.22799 1.32821 1.18972 0.85295 0.78946 0.76835 0.79732 1.16877 1.20090 1.18252 1.24263 0.73759 0.85285 0.86028 1.90650 1.45722 1.19579 1.86441 1.84697 1.77580 1.47979 1.19193 0.92081 0.91160 0.92552 0.93626 0.90326 0.86707 0.89379 0.88791 0.88534 0.91733 0.73381 0.87370 0.86658 0.86364 0.87075 0.89829 0.73357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.13 -2.49 5.34 30.60 0.16 -2.33 16 3 C -0.11 -2.26 4.38 30.59 0.13 -2.13 16 4 C 0.20 5.71 0.88 2.86 0.00 5.71 16 5 C -0.17 -4.90 6.64 71.98 0.48 -4.42 16 6 N -1.09 -35.30 4.58 -155.19 -0.71 -36.01 16 7 S 2.71 115.03 4.92 -56.49 -0.28 114.75 16 8 O -0.99 -48.54 16.54 -128.00 -2.12 -50.65 16 9 O -1.00 -43.22 13.46 -128.00 -1.72 -44.95 16 10 C -0.79 -36.36 3.72 22.73 0.08 -36.28 16 11 C -0.02 -0.74 9.41 22.22 0.21 -0.53 16 12 C -0.25 -10.55 10.05 22.46 0.23 -10.32 16 13 C -0.08 -3.20 10.02 22.22 0.22 -2.98 16 14 C -0.17 -8.06 8.63 22.73 0.20 -7.86 16 15 C 0.20 9.54 3.58 -21.29 -0.08 9.46 16 16 C -0.46 -22.02 7.09 23.46 0.17 -21.85 16 17 H 0.09 4.17 6.13 -2.91 -0.02 4.15 16 18 C 0.04 1.82 5.30 85.26 0.45 2.27 16 19 N -0.82 -40.09 11.02 21.83 0.24 -39.85 16 20 Si 0.97 36.02 29.56 68.60 2.03 38.05 16 21 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 22 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 C 0.47 15.76 4.31 71.24 0.31 16.06 16 25 O -0.53 -20.14 16.59 21.96 0.36 -19.78 16 26 O -0.49 -16.58 10.00 -51.39 -0.51 -17.09 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.04 1.05 6.97 -2.39 -0.02 1.04 16 31 H 0.08 1.42 6.23 -2.39 -0.01 1.41 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.10 2.36 5.96 -2.38 -0.01 2.34 16 36 H 0.06 2.30 6.05 -2.39 -0.01 2.28 16 37 H 0.43 11.73 8.39 -96.74 -0.81 10.91 16 38 H 0.11 4.70 7.32 -2.91 -0.02 4.68 16 39 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 40 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.11 5.37 6.51 -2.91 -0.02 5.35 16 42 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 43 H 0.41 12.77 9.10 -74.06 -0.67 12.10 16 Total: -1.00 -64.85 353.19 0.15 -64.69 By element: Atomic # 1 Polarization: 47.81 SS G_CDS: -0.42 Total: 47.39 kcal Atomic # 6 Polarization: -59.84 SS G_CDS: 3.28 Total: -56.56 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -0.47 Total: -75.86 kcal Atomic # 8 Polarization: -128.48 SS G_CDS: -3.99 Total: -132.47 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Atomic # 16 Polarization: 115.03 SS G_CDS: -0.28 Total: 114.75 kcal Total: -64.85 0.15 -64.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605204659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.595 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds