Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00396 * 2 1 4 4 C 1.52998 * 109.47348 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46862 * 65.00119 * 4 3 2 6 6 C 1.36878 * 119.99847 * 282.22161 * 5 4 3 7 7 H 1.08000 * 120.00431 * 315.09989 * 6 5 4 8 8 C 1.39049 * 119.99628 * 135.09913 * 6 5 4 9 9 N 1.31362 * 120.00371 * 338.02096 * 8 6 5 10 10 Si 1.86802 * 119.99718 * 158.02001 * 8 6 5 11 11 H 1.48497 * 109.47009 * 65.00570 * 10 8 6 12 12 H 1.48505 * 109.47180 * 185.00313 * 10 8 6 13 13 H 1.48493 * 109.47448 * 305.00094 * 10 8 6 14 14 C 1.34773 * 120.00253 * 102.23021 * 5 4 3 15 15 O 1.21598 * 120.00238 * 186.72148 * 14 5 4 16 16 C 1.47724 * 119.99870 * 6.71806 * 14 5 4 17 17 C 1.39666 * 120.15046 * 323.52488 * 16 14 5 18 18 C 1.37919 * 119.84287 * 179.97438 * 17 16 14 19 19 C 1.38387 * 120.15724 * 0.02839 * 18 17 16 20 20 C 1.50696 * 119.85166 * 179.97438 * 19 18 17 21 21 C 1.38364 * 120.30501 * 359.97381 * 19 18 17 22 22 S 1.76195 * 119.92612 * 180.02562 * 21 19 18 23 23 C 1.81392 * 104.45158 * 295.00099 * 22 21 19 24 24 O 1.42095 * 104.27804 * 178.92694 * 22 21 19 25 25 O 1.42108 * 104.27801 * 51.07355 * 22 21 19 26 26 C 1.37961 * 120.14799 * 0.27362 * 21 19 18 27 27 H 1.09004 * 109.47384 * 300.00519 * 1 2 3 28 28 H 1.09005 * 109.46989 * 59.99836 * 1 2 3 29 29 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46457 * 59.99490 * 3 2 1 31 31 H 1.08997 * 109.46508 * 300.00170 * 3 2 1 32 32 H 1.09001 * 109.47141 * 304.99598 * 4 3 2 33 33 H 1.08999 * 109.46874 * 184.99762 * 4 3 2 34 34 H 0.97000 * 120.00402 * 185.05070 * 9 8 6 35 35 H 1.07996 * 120.07652 * 359.96094 * 17 16 14 36 36 H 1.08000 * 119.91613 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.46916 * 270.02307 * 20 19 18 38 38 H 1.09002 * 109.47154 * 30.01438 * 20 19 18 39 39 H 1.09005 * 109.47536 * 150.01999 * 20 19 18 40 40 H 1.09001 * 109.47097 * 300.00433 * 23 22 21 41 41 H 1.08995 * 109.47624 * 179.97438 * 23 22 21 42 42 H 1.09006 * 109.47034 * 59.99616 * 23 22 21 43 43 H 1.07996 * 120.07351 * 179.70169 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 3.8610 -0.7892 -1.4216 7 1 4.1561 -1.4607 -0.6290 8 6 3.3633 -1.2991 -2.6157 9 7 2.6184 -0.5455 -3.3921 10 14 3.7542 -3.0560 -3.1158 11 1 3.1342 -3.9958 -2.1476 12 1 3.2130 -3.3161 -4.4741 13 1 5.2260 -3.2527 -3.1235 14 6 4.4965 1.3253 -2.2340 15 8 4.7491 0.8316 -3.3162 16 6 4.7594 2.7594 -1.9969 17 6 3.8893 3.5104 -1.2035 18 6 4.1411 4.8488 -0.9859 19 6 5.2526 5.4481 -1.5521 20 6 5.5209 6.9111 -1.3103 21 6 6.1188 4.7102 -2.3392 22 16 7.5313 5.4831 -3.0546 23 6 6.8444 6.6969 -4.2145 24 8 8.1853 4.4359 -3.7579 25 8 8.1628 6.1384 -1.9631 26 6 5.8762 3.3717 -2.5693 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 2.2110 -0.9223 -4.1876 35 1 3.0211 3.0441 -0.7616 36 1 3.4692 5.4305 -0.3722 37 1 5.0322 7.5029 -2.0843 38 1 5.1290 7.1958 -0.3338 39 1 6.5953 7.0930 -1.3378 40 1 6.2393 6.1833 -4.9617 41 1 7.6577 7.2287 -4.7080 42 1 6.2230 7.4082 -3.6703 43 1 6.5505 2.7980 -3.1878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001629261286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -74.827476 kcal Electronic energy + Delta-G solvation = -28753.910700 eV Core-core repulsion = 24701.071698 eV Total energy + Delta-G solvation = -4052.839002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -39.84414 -37.96048 -37.18199 -36.86355 -35.95057 -34.30954 -33.12316 -31.73107 -31.03139 -29.63290 -28.91056 -27.41193 -25.80561 -24.58890 -23.04456 -22.46528 -21.63094 -19.92568 -18.86714 -17.66303 -16.53137 -16.39513 -16.23285 -16.05164 -15.56742 -15.09602 -15.07504 -14.86105 -14.49301 -14.31597 -14.21592 -13.87806 -13.66108 -13.42578 -13.20604 -13.04837 -12.69610 -12.52003 -12.42855 -12.09329 -12.07891 -11.68499 -11.55570 -11.41568 -11.32769 -11.17069 -11.02123 -10.95371 -10.76892 -10.68879 -10.43875 -10.30120 -10.10635 -9.07971 -8.97329 -8.69204 -8.53440 -8.10031 -7.14268 -6.07339 -3.73840 0.03480 0.94310 1.39549 2.84859 3.33869 3.40516 3.43265 3.48049 3.83150 4.09732 4.29553 4.40919 4.53073 4.59846 4.66005 4.77687 4.86834 4.95116 5.18045 5.23451 5.30992 5.37429 5.46989 5.52209 5.62123 5.69345 5.77196 5.79519 5.83559 5.89825 5.95210 5.99453 6.03762 6.16598 6.17089 6.31071 6.40798 6.56559 6.65718 7.01949 7.69519 7.88276 8.29763 9.04179 9.13984 9.64287 10.22485 11.01638 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.003897 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.658088 B = 7183.037745 C = 8534.734607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.346 6.346 3 C 0.054 3.946 4 C 0.080 3.920 5 N -0.429 5.429 6 C -0.328 4.328 7 H 0.081 0.919 8 C 0.081 3.919 9 N -0.821 5.821 10 Si 0.910 3.090 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.494 3.506 15 O -0.526 6.526 16 C -0.112 4.112 17 C -0.067 4.067 18 C -0.147 4.147 19 C 0.000 4.000 20 C -0.171 4.171 21 C -0.664 4.664 22 S 2.501 3.499 23 C -0.655 4.655 24 O -0.936 6.936 25 O -0.939 6.939 26 C 0.019 3.981 27 H 0.025 0.975 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.263 0.737 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 16.234 4.285 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.263 6.263 3 C -0.024 4.024 4 C -0.044 4.044 5 N -0.149 5.149 6 C -0.455 4.455 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.453 5.453 10 Si 0.737 3.263 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.282 3.718 15 O -0.404 6.404 16 C -0.117 4.117 17 C -0.085 4.085 18 C -0.166 4.166 19 C -0.001 4.001 20 C -0.227 4.227 21 C -0.752 4.752 22 S 2.682 3.318 23 C -0.805 4.805 24 O -0.933 6.933 25 O -0.936 6.936 26 C -0.001 4.001 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.099 15.617 3.693 16.085 hybrid contribution -1.453 -0.471 -0.294 1.555 sum -0.355 15.146 3.399 15.527 Atomic orbital electron populations 1.22607 0.83261 1.01880 0.98475 1.88196 1.17403 1.25900 1.94822 1.22898 0.95291 0.85975 0.98246 1.22207 0.91982 0.99066 0.91183 1.43084 1.52464 1.07097 1.12250 1.18824 1.44877 0.79668 1.02098 0.90153 1.25162 0.93303 0.98057 0.96517 1.69814 1.25421 1.36511 1.13575 0.86320 0.79198 0.83323 0.77452 1.20501 1.21325 1.19867 1.17808 0.83054 0.84239 0.86712 1.90654 1.53825 1.72711 1.23222 1.20770 0.95896 0.96836 0.98200 1.22272 0.98755 0.93633 0.93875 1.21038 0.98062 0.94947 1.02512 1.19469 0.92710 0.95010 0.92926 1.21638 1.05588 0.91572 1.03910 1.30054 1.22220 1.05386 1.17532 1.05054 0.74938 0.75906 0.75946 1.30305 1.14332 1.18062 1.17795 1.93588 1.71786 1.53155 1.74771 1.93521 1.72816 1.76600 1.50697 1.20990 0.94752 0.91587 0.92812 0.95672 0.94700 0.90424 0.94604 0.93543 0.91333 0.89374 0.92737 0.83662 0.85291 0.90270 0.89733 0.88059 0.84647 0.85096 0.84971 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 11.01 101.05 1.11 1.68 16 2 O -0.35 -7.17 9.60 -35.23 -0.34 -7.51 16 3 C 0.05 0.98 5.22 37.16 0.19 1.17 16 4 C 0.08 1.55 5.34 -4.05 -0.02 1.53 16 5 N -0.43 -10.68 2.53 -115.93 -0.29 -10.97 16 6 C -0.33 -9.01 8.12 -15.00 -0.12 -9.13 16 7 H 0.08 2.17 7.92 -52.49 -0.42 1.75 16 8 C 0.08 2.29 4.26 -17.45 -0.07 2.22 16 9 N -0.82 -24.09 11.87 55.50 0.66 -23.43 16 10 Si 0.91 22.30 29.61 -169.99 -5.03 17.26 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.49 12.72 6.84 -12.39 -0.08 12.63 16 15 O -0.53 -15.76 14.46 5.28 0.08 -15.68 16 16 C -0.11 -2.31 5.44 -104.97 -0.57 -2.88 16 17 C -0.07 -1.11 7.37 -39.17 -0.29 -1.40 16 18 C -0.15 -1.96 9.68 -39.64 -0.38 -2.34 16 19 C 0.00 0.01 5.87 -104.52 -0.61 -0.61 16 20 C -0.17 -1.56 8.45 36.00 0.30 -1.25 16 21 C -0.66 -9.91 5.57 -39.64 -0.22 -10.13 16 22 S 2.50 30.89 5.20 -107.50 -0.56 30.33 16 23 C -0.66 -4.77 10.59 101.05 1.07 -3.70 16 24 O -0.94 -15.24 16.73 -57.54 -0.96 -16.20 16 25 O -0.94 -13.05 15.34 -57.54 -0.88 -13.93 16 26 C 0.02 0.35 9.07 -39.16 -0.36 0.00 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.90 7.11 -51.93 -0.37 0.53 16 32 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 33 H 0.09 1.49 4.11 -51.93 -0.21 1.28 16 34 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 35 H 0.15 2.31 3.44 -52.49 -0.18 2.13 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.08 0.50 7.09 -51.93 -0.37 0.14 16 38 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.10 0.97 4.87 -51.93 -0.25 0.72 16 40 H 0.13 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.13 0.70 5.99 -51.92 -0.31 0.39 16 43 H 0.15 3.01 7.17 -52.49 -0.38 2.63 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -38.42 358.61 -7.41 -45.83 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.42 Total: 1.11 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.06 Total: -12.21 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.37 Total: -34.40 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.11 Total: -53.32 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.26 kcal Atomic # 16 Polarization: 30.89 SS G_CDS: -0.56 Total: 30.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.42 -7.41 -45.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629261286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.996 kcal (2) G-P(sol) polarization free energy of solvation -38.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds