Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00396 * 2 1 4 4 C 1.52998 * 109.47348 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46862 * 65.00119 * 4 3 2 6 6 C 1.36878 * 119.99847 * 282.22161 * 5 4 3 7 7 H 1.08000 * 120.00431 * 315.09989 * 6 5 4 8 8 C 1.39049 * 119.99628 * 135.09913 * 6 5 4 9 9 N 1.31362 * 120.00371 * 338.02096 * 8 6 5 10 10 Si 1.86802 * 119.99718 * 158.02001 * 8 6 5 11 11 H 1.48497 * 109.47009 * 65.00570 * 10 8 6 12 12 H 1.48505 * 109.47180 * 185.00313 * 10 8 6 13 13 H 1.48493 * 109.47448 * 305.00094 * 10 8 6 14 14 C 1.34773 * 120.00253 * 102.23021 * 5 4 3 15 15 O 1.21598 * 120.00238 * 186.72148 * 14 5 4 16 16 C 1.47724 * 119.99870 * 6.71806 * 14 5 4 17 17 C 1.39666 * 120.15046 * 323.52488 * 16 14 5 18 18 C 1.37919 * 119.84287 * 179.97438 * 17 16 14 19 19 C 1.38387 * 120.15724 * 0.02839 * 18 17 16 20 20 C 1.50696 * 119.85166 * 179.97438 * 19 18 17 21 21 C 1.38364 * 120.30501 * 359.97381 * 19 18 17 22 22 S 1.76195 * 119.92612 * 180.02562 * 21 19 18 23 23 C 1.81392 * 104.45158 * 295.00099 * 22 21 19 24 24 O 1.42095 * 104.27804 * 178.92694 * 22 21 19 25 25 O 1.42108 * 104.27801 * 51.07355 * 22 21 19 26 26 C 1.37961 * 120.14799 * 0.27362 * 21 19 18 27 27 H 1.09004 * 109.47384 * 300.00519 * 1 2 3 28 28 H 1.09005 * 109.46989 * 59.99836 * 1 2 3 29 29 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46457 * 59.99490 * 3 2 1 31 31 H 1.08997 * 109.46508 * 300.00170 * 3 2 1 32 32 H 1.09001 * 109.47141 * 304.99598 * 4 3 2 33 33 H 1.08999 * 109.46874 * 184.99762 * 4 3 2 34 34 H 0.97000 * 120.00402 * 185.05070 * 9 8 6 35 35 H 1.07996 * 120.07652 * 359.96094 * 17 16 14 36 36 H 1.08000 * 119.91613 * 180.02562 * 18 17 16 37 37 H 1.09003 * 109.46916 * 270.02307 * 20 19 18 38 38 H 1.09002 * 109.47154 * 30.01438 * 20 19 18 39 39 H 1.09005 * 109.47536 * 150.01999 * 20 19 18 40 40 H 1.09001 * 109.47097 * 300.00433 * 23 22 21 41 41 H 1.08995 * 109.47624 * 179.97438 * 23 22 21 42 42 H 1.09006 * 109.47034 * 59.99616 * 23 22 21 43 43 H 1.07996 * 120.07351 * 179.70169 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 3.8610 -0.7892 -1.4216 7 1 4.1561 -1.4607 -0.6290 8 6 3.3633 -1.2991 -2.6157 9 7 2.6184 -0.5455 -3.3921 10 14 3.7542 -3.0560 -3.1158 11 1 3.1342 -3.9958 -2.1476 12 1 3.2130 -3.3161 -4.4741 13 1 5.2260 -3.2527 -3.1235 14 6 4.4965 1.3253 -2.2340 15 8 4.7491 0.8316 -3.3162 16 6 4.7594 2.7594 -1.9969 17 6 3.8893 3.5104 -1.2035 18 6 4.1411 4.8488 -0.9859 19 6 5.2526 5.4481 -1.5521 20 6 5.5209 6.9111 -1.3103 21 6 6.1188 4.7102 -2.3392 22 16 7.5313 5.4831 -3.0546 23 6 6.8444 6.6969 -4.2145 24 8 8.1853 4.4359 -3.7579 25 8 8.1628 6.1384 -1.9631 26 6 5.8762 3.3717 -2.5693 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 2.2110 -0.9223 -4.1876 35 1 3.0211 3.0441 -0.7616 36 1 3.4692 5.4305 -0.3722 37 1 5.0322 7.5029 -2.0843 38 1 5.1290 7.1958 -0.3338 39 1 6.5953 7.0930 -1.3378 40 1 6.2393 6.1833 -4.9617 41 1 7.6577 7.2287 -4.7080 42 1 6.2230 7.4082 -3.6703 43 1 6.5505 2.7980 -3.1878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629261286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -105.303759 kcal Electronic energy + Delta-G solvation = -28755.232251 eV Core-core repulsion = 24701.071698 eV Total energy + Delta-G solvation = -4054.160552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33093 -39.45065 -38.48466 -38.22600 -37.01615 -36.17735 -34.60911 -33.37541 -32.34599 -30.54697 -30.31769 -28.61482 -27.20288 -26.35790 -24.31221 -23.96676 -22.98350 -21.49931 -20.08699 -19.12589 -18.22571 -17.69809 -17.37420 -17.09977 -16.98474 -16.91973 -16.38704 -16.19663 -15.99261 -15.89553 -15.54235 -15.10253 -14.92866 -14.69879 -14.29207 -14.10342 -14.00360 -13.70106 -13.49116 -13.31712 -13.18677 -13.12858 -12.94296 -12.87734 -12.72725 -12.66213 -12.55599 -12.51570 -12.35900 -12.17763 -11.89628 -11.82271 -11.47704 -10.78077 -10.35776 -10.35546 -10.13377 -9.71933 -9.15368 -8.17581 -5.87463 -0.87791 -0.27544 0.09365 1.35450 1.44326 1.47533 1.86104 2.04484 2.35553 2.70729 2.88522 2.98955 3.12737 3.25683 3.29881 3.71890 3.77274 3.91213 4.06264 4.10453 4.16449 4.26791 4.33775 4.38677 4.45313 4.48173 4.57692 4.63286 4.65571 4.68110 4.77871 4.82127 4.88986 4.94553 4.97455 5.09011 5.27435 5.30231 5.33524 5.53768 5.82133 6.22402 6.52865 7.03585 7.15674 7.64172 8.26561 8.91698 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.003897 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.658088 B = 7183.037745 C = 8534.734607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.058 3.942 4 C 0.075 3.925 5 N -0.443 5.443 6 C -0.344 4.344 7 H 0.075 0.925 8 C 0.037 3.963 9 N -0.856 5.856 10 Si 0.960 3.040 11 H -0.258 1.258 12 H -0.288 1.288 13 H -0.283 1.283 14 C 0.484 3.516 15 O -0.588 6.588 16 C -0.150 4.150 17 C -0.068 4.068 18 C -0.134 4.134 19 C 0.019 3.981 20 C -0.177 4.177 21 C -0.669 4.669 22 S 2.497 3.503 23 C -0.622 4.622 24 O -0.990 6.990 25 O -0.957 6.957 26 C -0.005 4.005 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.256 0.744 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 20.953 5.989 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.019 4.019 4 C -0.047 4.047 5 N -0.162 5.162 6 C -0.471 4.471 7 H 0.093 0.907 8 C -0.171 4.171 9 N -0.490 5.490 10 Si 0.785 3.215 11 H -0.183 1.183 12 H -0.214 1.214 13 H -0.209 1.209 14 C 0.274 3.726 15 O -0.471 6.471 16 C -0.155 4.155 17 C -0.086 4.086 18 C -0.152 4.152 19 C 0.017 3.983 20 C -0.233 4.233 21 C -0.754 4.754 22 S 2.681 3.319 23 C -0.777 4.777 24 O -0.987 6.987 25 O -0.954 6.954 26 C -0.025 4.025 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.065 0.935 35 H 0.170 0.830 36 H 0.198 0.802 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.164 0.836 41 H 0.182 0.818 42 H 0.185 0.815 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.008 20.294 5.500 21.026 hybrid contribution -1.028 -1.632 -0.775 2.078 sum -1.019 18.663 4.726 19.279 Atomic orbital electron populations 1.22739 0.81274 1.02611 0.99720 1.88126 1.19777 1.27560 1.95144 1.22898 0.93819 0.85469 0.99731 1.22477 0.93582 1.00144 0.88542 1.43266 1.52614 1.06603 1.13765 1.18933 1.44800 0.81330 1.02061 0.90717 1.25853 0.93271 1.01292 0.96675 1.69915 1.27274 1.37833 1.13983 0.85540 0.78243 0.80235 0.77446 1.18298 1.21374 1.20928 1.18663 0.81503 0.86557 0.85868 1.90580 1.56065 1.74758 1.25682 1.20374 0.98583 0.94415 1.02113 1.22335 0.98021 0.95137 0.93131 1.21576 0.98525 0.93428 1.01710 1.20145 0.91037 0.97219 0.89850 1.21883 1.06161 0.88344 1.06896 1.30438 1.23360 1.03757 1.17838 1.05164 0.74261 0.76168 0.76325 1.30085 1.15781 1.15906 1.15925 1.93532 1.73236 1.56486 1.75460 1.93496 1.73194 1.76299 1.52440 1.20782 0.94572 0.93543 0.93647 0.91954 0.95683 0.90146 0.89462 0.95222 0.91078 0.86649 0.93503 0.83035 0.80227 0.86081 0.87147 0.88291 0.83560 0.81787 0.81525 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.30 16 2 O -0.39 -16.09 9.60 -148.98 -1.43 -17.52 16 3 C 0.06 2.06 5.22 71.98 0.38 2.43 16 4 C 0.08 2.95 5.34 86.38 0.46 3.41 16 5 N -0.44 -23.21 2.53 -638.96 -1.61 -24.82 16 6 C -0.34 -19.92 8.12 84.10 0.68 -19.24 16 7 H 0.08 4.26 7.92 -2.91 -0.02 4.24 16 8 C 0.04 2.18 4.26 84.96 0.36 2.54 16 9 N -0.86 -53.33 11.87 21.68 0.26 -53.07 16 10 Si 0.96 48.11 29.61 68.60 2.03 50.14 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 13 H -0.28 -14.46 7.11 99.48 0.71 -13.76 16 14 C 0.48 26.67 6.84 86.75 0.59 27.26 16 15 O -0.59 -38.31 14.46 -4.03 -0.06 -38.37 16 16 C -0.15 -6.46 5.44 -20.09 -0.11 -6.57 16 17 C -0.07 -2.17 7.37 22.54 0.17 -2.00 16 18 C -0.13 -2.98 9.68 22.23 0.22 -2.77 16 19 C 0.02 0.41 5.87 -19.80 -0.12 0.30 16 20 C -0.18 -2.06 8.45 71.23 0.60 -1.46 16 21 C -0.67 -19.24 5.57 22.23 0.12 -19.11 16 22 S 2.50 58.18 5.20 -56.49 -0.29 57.89 16 23 C -0.62 -5.94 10.59 113.37 1.20 -4.74 16 24 O -0.99 -33.70 16.73 -127.65 -2.14 -35.84 16 25 O -0.96 -24.63 15.34 -127.65 -1.96 -26.59 16 26 C -0.01 -0.21 9.07 22.54 0.20 -0.01 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.03 1.14 7.11 -2.39 -0.02 1.13 16 32 H 0.07 2.70 8.13 -2.39 -0.02 2.68 16 33 H 0.12 3.82 4.11 -2.39 -0.01 3.81 16 34 H 0.26 15.47 8.32 -92.71 -0.77 14.70 16 35 H 0.15 4.57 3.44 -2.91 -0.01 4.56 16 36 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.12 0.53 7.09 -2.39 -0.02 0.51 16 38 H 0.11 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.10 1.34 4.87 -2.38 -0.01 1.32 16 40 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.17 0.54 5.99 -2.39 -0.01 0.52 16 43 H 0.12 5.29 7.17 -2.91 -0.02 5.27 16 Total: -1.00 -95.62 358.61 1.86 -93.76 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.05 Total: 12.07 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 6.01 Total: -17.65 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.36 Total: -77.89 kcal Atomic # 8 Polarization: -112.73 SS G_CDS: -5.58 Total: -118.31 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Atomic # 16 Polarization: 58.18 SS G_CDS: -0.29 Total: 57.89 kcal Total: -95.62 1.86 -93.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629261286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.542 kcal (2) G-P(sol) polarization free energy of solvation -95.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds