Wall clock time and date at job start Sat Apr 11 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47516 * 304.99868 * 3 2 1 5 5 C 1.50703 * 109.47302 * 184.99961 * 3 2 1 6 6 H 1.08004 * 120.00026 * 240.00223 * 5 3 2 7 7 C 1.37878 * 119.99838 * 60.00134 * 5 3 2 8 8 N 1.31516 * 119.99766 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99954 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47307 * 90.00070 * 9 7 5 11 11 H 1.48501 * 109.47011 * 209.99946 * 9 7 5 12 12 H 1.48497 * 109.47091 * 329.99497 * 9 7 5 13 13 N 1.46506 * 109.47262 * 65.00206 * 3 2 1 14 14 C 1.37996 * 119.99517 * 275.00404 * 13 3 2 15 15 N 1.32861 * 120.04739 * 359.71792 * 14 13 3 16 16 C 1.32841 * 119.82237 * 179.77587 * 15 14 13 17 17 N 1.38000 * 120.04342 * 180.25029 * 16 15 14 18 18 N 1.33126 * 119.91679 * 0.50471 * 16 15 14 19 19 C 1.32135 * 120.08341 * 359.74659 * 18 16 15 20 20 C 1.50701 * 119.91193 * 179.97438 * 19 18 16 21 21 F 1.39893 * 109.46909 * 120.02597 * 20 19 18 22 22 F 1.39903 * 109.46775 * 240.02380 * 20 19 18 23 23 C 1.52991 * 109.46924 * 0.02562 * 20 19 18 24 24 F 1.39908 * 109.47385 * 60.00460 * 23 20 19 25 25 F 1.39900 * 109.47279 * 180.02562 * 23 20 19 26 26 F 1.39904 * 109.47534 * 300.00196 * 23 20 19 27 27 N 1.32169 * 120.17727 * 0.02562 * 19 18 16 28 28 H 1.09004 * 109.46916 * 299.99584 * 1 2 3 29 29 H 1.08997 * 109.47126 * 60.00157 * 1 2 3 30 30 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47425 * 240.00169 * 2 1 3 32 32 H 1.09004 * 109.47481 * 119.99840 * 2 1 3 33 33 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 34 34 H 0.96995 * 120.00050 * 94.72411 * 13 3 2 35 35 H 0.97003 * 120.00215 * 180.24634 * 17 16 15 36 36 H 0.97008 * 119.99853 * 0.25569 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1728 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0975 1.2519 14 6 0.4060 2.6778 1.3697 15 7 -0.4412 2.6480 0.3467 16 6 -1.6416 3.2041 0.4665 17 7 -2.5270 3.1713 -0.5914 18 7 -1.9875 3.7977 1.6068 19 6 -1.1404 3.8297 2.6204 20 6 -1.5357 4.5032 3.9093 21 9 -1.4946 3.5728 4.9532 22 9 -0.6466 5.5486 4.1809 23 6 -2.9543 5.0610 3.7788 24 9 -3.8435 4.0156 3.5072 25 9 -3.3212 5.6868 4.9751 26 9 -2.9955 5.9914 2.7348 27 7 0.0532 3.2736 2.5065 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0618 -2.9495 34 1 2.2704 2.1197 1.9991 35 1 -3.4021 3.5807 -0.5045 36 1 -2.2744 2.7386 -1.4221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651719537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:49 Heat of formation + Delta-G solvation = -156.969327 kcal Electronic energy + Delta-G solvation = -31162.965409 eV Core-core repulsion = 25939.619750 eV Total energy + Delta-G solvation = -5223.345659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.75614 -49.38297 -48.29647 -47.98660 -47.34010 -41.35575 -37.06016 -35.69028 -33.97436 -32.11957 -31.67370 -30.65158 -30.15279 -27.15519 -25.35389 -23.55097 -23.10441 -22.36810 -20.29771 -19.69290 -19.22097 -19.18705 -18.36523 -17.97262 -17.54590 -17.21898 -16.21159 -15.79525 -15.64244 -15.33547 -15.16044 -14.87254 -14.75413 -14.67725 -14.49037 -14.28937 -14.12020 -14.02211 -14.00589 -13.96674 -13.81729 -13.29401 -13.19375 -12.81114 -12.15283 -11.86350 -11.81087 -11.40025 -11.16767 -11.06086 -10.80724 -10.38416 -10.30939 -9.81107 -9.59762 -9.32614 -9.06926 -8.84483 -8.61448 -7.79087 -6.26785 -4.36304 0.94211 1.50940 1.62114 2.44118 2.92586 3.04504 3.17687 3.22041 3.25440 3.29117 3.36120 3.63703 4.04348 4.05516 4.23935 4.45988 4.66856 4.83856 5.06087 5.87497 6.20005 6.24221 6.44525 6.47034 6.63647 6.86161 6.97126 7.11864 7.17172 7.28706 7.37816 7.53158 7.68436 7.87086 8.03971 8.26357 8.60603 8.83557 9.30749 10.78508 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.003277 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.432418 B = 8543.180072 C = 9157.889434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.277 3.723 4 H 0.060 0.940 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.641 5.641 14 C 0.630 3.370 15 N -0.611 5.611 16 C 0.634 3.366 17 N -0.804 5.804 18 N -0.631 5.631 19 C 0.359 3.641 20 C 0.351 3.649 21 F -0.145 7.145 22 F -0.145 7.145 23 C 0.451 3.549 24 F -0.146 7.146 25 F -0.165 7.165 26 F -0.146 7.146 27 N -0.607 5.607 28 H 0.027 0.973 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.105 0.895 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.410 0.590 35 H 0.415 0.585 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 6.770 7.341 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.078 0.922 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.133 4.133 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.270 5.270 14 C 0.266 3.734 15 N -0.352 5.352 16 C 0.267 3.733 17 N -0.354 5.354 18 N -0.370 5.370 19 C 0.074 3.926 20 C 0.310 3.690 21 F -0.125 7.125 22 F -0.125 7.125 23 C 0.394 3.606 24 F -0.127 7.127 25 F -0.146 7.146 26 F -0.127 7.127 27 N -0.342 5.342 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.123 0.877 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.247 0.753 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -13.110 6.501 6.899 16.178 hybrid contribution 0.880 -0.002 0.045 0.881 sum -12.230 6.499 6.945 15.493 Atomic orbital electron populations 1.21804 0.98447 0.98028 1.00541 1.21972 0.92570 0.99457 1.02737 1.19078 0.94631 0.89236 0.79534 0.92203 1.21189 0.90250 1.39636 1.06671 0.91810 1.24837 0.98861 0.94488 0.95160 1.69873 1.35293 1.37271 1.09353 0.86401 0.84424 0.78623 0.77445 1.20420 1.20987 1.19760 1.45432 1.09011 1.53206 1.19398 1.19109 0.87646 0.84179 0.82450 1.68428 1.04048 1.30346 1.32367 1.18828 0.85746 0.83466 0.85275 1.41612 1.16931 1.63405 1.13459 1.67928 1.37128 1.30065 1.01879 1.21547 0.87181 0.91949 0.91970 1.19492 0.86662 0.79022 0.83830 1.93201 1.96463 1.65133 1.57745 1.93206 1.68896 1.56375 1.94035 1.20156 0.87492 0.77693 0.75254 1.93292 1.69268 1.56667 1.93461 1.93276 1.92560 1.82929 1.45834 1.93292 1.96461 1.65530 1.57391 1.68115 1.18604 1.20182 1.27328 0.95434 0.92660 0.95696 0.87740 0.94819 0.92402 0.75285 0.75344 0.74799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.45 37.16 0.31 -2.27 16 2 C -0.13 -2.86 5.45 -26.73 -0.15 -3.01 16 3 C 0.28 6.38 2.24 -69.08 -0.15 6.23 16 4 H 0.06 1.54 7.53 -51.93 -0.39 1.15 16 5 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -22.97 11.29 55.43 0.63 -22.35 16 9 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.64 -13.10 5.14 -56.80 -0.29 -13.39 16 14 C 0.63 12.44 7.02 -322.14 -2.26 10.18 16 15 N -0.61 -11.44 6.61 -14.75 -0.10 -11.54 16 16 C 0.63 10.19 8.76 -322.13 -2.82 7.37 16 17 N -0.80 -9.11 9.05 29.86 0.27 -8.84 16 18 N -0.63 -10.08 7.93 -11.51 -0.09 -10.17 16 19 C 0.36 6.06 6.79 -156.58 -1.06 5.00 16 20 C 0.35 5.08 1.82 -27.89 -0.05 5.03 16 21 F -0.14 -2.06 17.01 2.25 0.04 -2.02 16 22 F -0.14 -2.07 17.01 2.25 0.04 -2.03 16 23 C 0.45 5.73 2.37 37.15 0.09 5.82 16 24 F -0.15 -1.87 16.26 2.25 0.04 -1.83 16 25 F -0.16 -1.91 17.28 2.25 0.04 -1.87 16 26 F -0.15 -1.87 16.25 2.25 0.04 -1.84 16 27 N -0.61 -11.33 10.46 -11.52 -0.12 -11.45 16 28 H 0.03 0.55 5.60 -51.93 -0.29 0.25 16 29 H 0.05 1.09 7.67 -51.93 -0.40 0.69 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.28 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.41 7.87 8.66 -40.82 -0.35 7.52 16 35 H 0.42 3.60 8.95 -40.82 -0.37 3.24 16 36 H 0.42 4.27 8.95 -40.82 -0.37 3.91 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -26.62 327.70 -8.95 -35.57 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -2.86 Total: 9.78 kcal Atomic # 6 Polarization: 28.76 SS G_CDS: -6.49 Total: 22.27 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: 0.29 Total: -77.74 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 0.19 Total: -9.59 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.62 -8.95 -35.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651719537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.404 kcal (2) G-P(sol) polarization free energy of solvation -26.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds