Wall clock time and date at job start Sat Apr 11 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46729 * 2 1 4 4 C 1.53000 * 109.47455 * 119.99543 * 2 1 3 5 5 N 1.46495 * 109.47250 * 300.00948 * 4 2 1 6 6 S 1.65601 * 120.00086 * 165.27394 * 5 4 2 7 7 O 1.42103 * 106.40190 * 178.26116 * 6 5 4 8 8 O 1.42102 * 106.40150 * 311.17954 * 6 5 4 9 9 C 1.76193 * 107.22064 * 64.72023 * 6 5 4 10 10 C 1.38640 * 119.74876 * 269.72990 * 9 6 5 11 11 C 1.37616 * 120.24747 * 179.71961 * 10 9 6 12 12 C 1.40723 * 119.74422 * 0.57362 * 11 10 9 13 13 C 1.41397 * 120.24368 * 179.68218 * 12 11 10 14 14 H 1.07997 * 119.99763 * 204.40475 * 13 12 11 15 15 C 1.39952 * 119.99728 * 24.40435 * 13 12 11 16 16 N 1.30813 * 120.00315 * 17.84643 * 15 13 12 17 17 Si 1.86801 * 119.99475 * 197.84489 * 15 13 12 18 18 H 1.48500 * 109.47199 * 60.00281 * 17 15 13 19 19 H 1.48503 * 109.46966 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47271 * 300.00091 * 17 15 13 21 21 C 1.40710 * 119.51087 * 359.69821 * 12 11 10 22 22 C 1.37617 * 119.74854 * 0.02562 * 21 12 11 23 23 C 1.52995 * 109.47604 * 240.00360 * 2 1 3 24 24 C 1.50694 * 109.47370 * 59.99330 * 23 2 1 25 25 O 1.20832 * 120.00019 * 0.02562 * 24 23 2 26 26 O 1.34229 * 120.00283 * 180.02562 * 24 23 2 27 27 H 1.08996 * 109.47221 * 299.99585 * 1 2 3 28 28 H 1.08997 * 109.47038 * 59.99954 * 1 2 3 29 29 H 1.09002 * 109.46706 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47074 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47398 * 299.99826 * 3 2 1 32 32 H 1.08996 * 109.46930 * 60.00237 * 3 2 1 33 33 H 1.08994 * 109.47484 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.46897 * 60.00286 * 4 2 1 35 35 H 0.96999 * 120.00352 * 344.99075 * 5 4 2 36 36 H 1.07995 * 119.87521 * 359.97438 * 10 9 6 37 37 H 1.08001 * 120.12985 * 180.27304 * 11 10 9 38 38 H 0.97001 * 119.99944 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.12738 * 179.97438 * 21 12 11 40 40 H 1.07994 * 119.88193 * 179.97438 * 22 21 12 41 41 H 1.08994 * 109.47360 * 179.97438 * 23 2 1 42 42 H 1.09002 * 109.47059 * 299.99746 * 23 2 1 43 43 H 0.96697 * 117.00157 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.5516 -0.0306 2.4454 6 16 1.6319 -0.7754 3.9223 7 8 1.1263 0.1556 4.8692 8 8 1.0890 -2.0767 3.7455 9 6 3.3380 -0.9957 4.3033 10 6 3.9847 -2.1592 3.9158 11 6 5.3185 -2.3395 4.2030 12 6 6.0228 -1.3427 4.9034 13 6 7.3917 -1.5199 5.2099 14 1 7.8306 -0.9939 6.0448 15 6 8.1778 -2.3769 4.4314 16 7 7.7707 -2.7379 3.2418 17 14 9.8087 -3.0053 5.0910 18 1 9.5748 -3.7704 6.3421 19 1 10.4430 -3.8904 4.0813 20 1 10.7043 -1.8551 5.3742 21 6 5.3547 -0.1684 5.2966 22 6 4.0220 -0.0070 4.9936 23 6 2.0401 -0.7211 -1.2492 24 6 1.5377 -0.0108 -2.4797 25 8 0.8433 0.9718 -2.3688 26 8 1.8617 -0.4696 -3.6988 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7207 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 1.1850 0.8645 2.3730 36 1 3.4409 -2.9251 3.3830 37 1 5.8215 -3.2447 3.8964 38 1 8.3158 -3.3317 2.7021 39 1 5.8854 0.6029 5.8348 40 1 3.5070 0.8932 5.2947 41 1 3.1300 -0.7207 -1.2494 42 1 1.6768 -1.7488 -1.2493 43 1 1.5162 0.0195 -4.4580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771659948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:00 Heat of formation + Delta-G solvation = -165.357343 kcal Electronic energy + Delta-G solvation = -27843.565296 eV Core-core repulsion = 23786.800625 eV Total energy + Delta-G solvation = -4056.764671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79749 -38.01220 -37.58052 -36.47346 -36.16136 -35.11326 -34.05772 -33.04977 -30.27142 -29.47766 -28.74632 -27.27767 -25.95275 -25.79739 -22.16851 -21.52720 -21.14266 -19.23463 -18.82659 -18.31903 -17.63153 -17.09142 -16.83859 -16.42530 -16.19336 -15.57844 -15.44203 -14.77296 -14.35606 -14.13618 -14.08648 -13.66686 -13.37855 -13.23929 -13.04662 -12.83820 -12.42481 -12.28299 -12.19485 -11.85180 -11.80599 -11.67013 -11.46026 -11.35531 -11.28141 -11.23601 -11.17292 -11.11965 -10.99513 -10.92733 -10.87194 -10.44102 -10.13192 -9.77349 -9.64654 -9.51555 -9.00687 -7.97464 -7.71618 -7.16470 -4.81843 1.27086 1.99825 2.24570 2.82794 2.86724 2.88136 2.90895 2.93856 3.64764 3.76415 4.22208 4.44690 4.52612 4.66203 4.73034 5.12079 5.19694 5.29341 5.34969 5.37276 5.38082 5.63165 5.72952 5.86083 5.88227 5.98568 6.05458 6.06484 6.08885 6.11429 6.30527 6.34826 6.52946 6.66507 6.69560 6.90149 7.03728 7.30653 7.34609 7.41777 7.62145 7.70072 7.75521 7.95556 8.30158 8.49816 8.63606 9.74918 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003338 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.171111 B = 8386.821066 C =10128.455801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.056 4.056 3 C -0.157 4.157 4 C 0.131 3.869 5 N -1.123 6.123 6 S 2.694 3.306 7 O -0.987 6.987 8 O -0.985 6.985 9 C -0.787 4.787 10 C -0.017 4.017 11 C -0.183 4.183 12 C 0.140 3.860 13 C -0.436 4.436 14 H 0.087 0.913 15 C 0.074 3.926 16 N -0.766 5.766 17 Si 0.917 3.083 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.261 1.261 21 C -0.240 4.240 22 C 0.003 3.997 23 C -0.108 4.108 24 C 0.482 3.518 25 O -0.507 6.507 26 O -0.519 6.519 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 2.550 -11.502 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.058 4.058 3 C -0.214 4.214 4 C 0.005 3.995 5 N -0.880 5.880 6 S 2.793 3.207 7 O -0.978 6.978 8 O -0.975 6.975 9 C -0.883 4.883 10 C -0.037 4.037 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.463 4.463 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.389 5.389 17 Si 0.740 3.260 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.260 4.260 22 C -0.017 4.017 23 C -0.147 4.147 24 C 0.325 3.675 25 O -0.395 6.395 26 O -0.331 6.331 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.244 0.756 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.682 2.031 -10.854 12.907 hybrid contribution 1.264 0.466 -0.484 1.431 sum -5.418 2.497 -11.338 12.812 Atomic orbital electron populations 1.22129 0.93497 1.02184 1.03503 1.20530 0.97000 0.96246 0.91995 1.22140 1.01022 0.94830 1.03432 1.21195 0.99178 0.95758 0.83401 1.55719 1.79114 1.29757 1.23428 1.01179 0.75196 0.72670 0.71650 1.93491 1.80470 1.64276 1.59530 1.93479 1.78499 1.39721 1.85776 1.29163 1.23532 1.07131 1.28482 1.20259 0.94705 0.93560 0.95210 1.21334 0.92683 1.00389 1.05889 1.17844 0.92679 0.89274 0.86580 1.19920 0.94082 1.20730 1.11610 0.89502 1.26115 1.00992 0.93983 0.93782 1.69797 1.37698 1.24216 1.07149 0.86203 0.80112 0.79680 0.80006 1.18356 1.19885 1.18574 1.21048 0.94771 0.98887 1.11309 1.20160 0.94028 0.95017 0.92504 1.21457 1.03888 1.00835 0.88476 1.23510 0.76890 0.82471 0.84644 1.90622 1.35859 1.26264 1.86771 1.84566 1.72423 1.59099 1.17022 0.92156 0.90339 0.92771 0.92485 0.90242 0.92247 0.90943 0.90302 0.75634 0.87890 0.85986 0.89949 0.88255 0.87832 0.86906 0.87094 0.73348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.01 37.16 0.30 -1.42 16 2 C -0.06 -0.60 0.53 -154.51 -0.08 -0.69 16 3 C -0.16 -1.74 8.00 37.16 0.30 -1.44 16 4 C 0.13 1.69 5.11 -4.04 -0.02 1.67 16 5 N -1.12 -16.26 5.33 -10.62 -0.06 -16.31 16 6 S 2.69 50.58 5.73 -107.50 -0.62 49.97 16 7 O -0.99 -20.64 17.26 -57.17 -0.99 -21.62 16 8 O -0.98 -20.47 16.74 -57.17 -0.96 -21.43 16 9 C -0.79 -16.85 5.96 -39.28 -0.23 -17.08 16 10 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 11 C -0.18 -4.44 8.70 -38.87 -0.34 -4.77 16 12 C 0.14 3.48 5.58 -106.82 -0.60 2.88 16 13 C -0.44 -10.52 9.05 -37.74 -0.34 -10.86 16 14 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 15 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 16 N -0.77 -17.63 10.95 55.55 0.61 -17.03 16 17 Si 0.92 16.71 29.59 -169.99 -5.03 11.68 16 18 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 19 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 20 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 21 C -0.24 -5.59 9.80 -38.88 -0.38 -5.97 16 22 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 23 C -0.11 -0.97 4.88 -27.89 -0.14 -1.10 16 24 C 0.48 4.52 7.74 36.00 0.28 4.79 16 25 O -0.51 -5.86 12.11 -18.75 -0.23 -6.09 16 26 O -0.52 -3.83 13.42 -39.26 -0.53 -4.36 16 27 H 0.06 0.67 7.19 -51.93 -0.37 0.30 16 28 H 0.08 0.90 5.52 -51.93 -0.29 0.61 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.92 5.52 -51.93 -0.29 0.63 16 32 H 0.06 0.65 6.60 -51.93 -0.34 0.30 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.00 7.76 -51.93 -0.40 0.60 16 35 H 0.41 5.17 6.47 -34.47 -0.22 4.95 16 36 H 0.10 2.11 7.59 -52.49 -0.40 1.71 16 37 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 38 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 41 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.41 1.35 9.10 45.56 0.41 1.76 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -31.30 364.44 -9.11 -40.41 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.71 Total: 12.80 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: -2.10 Total: -33.50 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.55 Total: -33.34 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -2.70 Total: -53.50 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.62 Total: 49.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.30 -9.11 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771659948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.952 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds