Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46729 * 2 1 4 4 C 1.53000 * 109.47455 * 119.99543 * 2 1 3 5 5 N 1.46495 * 109.47250 * 300.00948 * 4 2 1 6 6 S 1.65601 * 120.00086 * 165.27394 * 5 4 2 7 7 O 1.42103 * 106.40190 * 178.26116 * 6 5 4 8 8 O 1.42102 * 106.40150 * 311.17954 * 6 5 4 9 9 C 1.76193 * 107.22064 * 64.72023 * 6 5 4 10 10 C 1.38640 * 119.74876 * 269.72990 * 9 6 5 11 11 C 1.37616 * 120.24747 * 179.71961 * 10 9 6 12 12 C 1.40723 * 119.74422 * 0.57362 * 11 10 9 13 13 C 1.41397 * 120.24368 * 179.68218 * 12 11 10 14 14 H 1.07997 * 119.99763 * 204.40475 * 13 12 11 15 15 C 1.39952 * 119.99728 * 24.40435 * 13 12 11 16 16 N 1.30813 * 120.00315 * 17.84643 * 15 13 12 17 17 Si 1.86801 * 119.99475 * 197.84489 * 15 13 12 18 18 H 1.48500 * 109.47199 * 60.00281 * 17 15 13 19 19 H 1.48503 * 109.46966 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47271 * 300.00091 * 17 15 13 21 21 C 1.40710 * 119.51087 * 359.69821 * 12 11 10 22 22 C 1.37617 * 119.74854 * 0.02562 * 21 12 11 23 23 C 1.52995 * 109.47604 * 240.00360 * 2 1 3 24 24 C 1.50694 * 109.47370 * 59.99330 * 23 2 1 25 25 O 1.20832 * 120.00019 * 0.02562 * 24 23 2 26 26 O 1.34229 * 120.00283 * 180.02562 * 24 23 2 27 27 H 1.08996 * 109.47221 * 299.99585 * 1 2 3 28 28 H 1.08997 * 109.47038 * 59.99954 * 1 2 3 29 29 H 1.09002 * 109.46706 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47074 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47398 * 299.99826 * 3 2 1 32 32 H 1.08996 * 109.46930 * 60.00237 * 3 2 1 33 33 H 1.08994 * 109.47484 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.46897 * 60.00286 * 4 2 1 35 35 H 0.96999 * 120.00352 * 344.99075 * 5 4 2 36 36 H 1.07995 * 119.87521 * 359.97438 * 10 9 6 37 37 H 1.08001 * 120.12985 * 180.27304 * 11 10 9 38 38 H 0.97001 * 119.99944 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.12738 * 179.97438 * 21 12 11 40 40 H 1.07994 * 119.88193 * 179.97438 * 22 21 12 41 41 H 1.08994 * 109.47360 * 179.97438 * 23 2 1 42 42 H 1.09002 * 109.47059 * 299.99746 * 23 2 1 43 43 H 0.96697 * 117.00157 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.5516 -0.0306 2.4454 6 16 1.6319 -0.7754 3.9223 7 8 1.1263 0.1556 4.8692 8 8 1.0890 -2.0767 3.7455 9 6 3.3380 -0.9957 4.3033 10 6 3.9847 -2.1592 3.9158 11 6 5.3185 -2.3395 4.2030 12 6 6.0228 -1.3427 4.9034 13 6 7.3917 -1.5199 5.2099 14 1 7.8306 -0.9939 6.0448 15 6 8.1778 -2.3769 4.4314 16 7 7.7707 -2.7379 3.2418 17 14 9.8087 -3.0053 5.0910 18 1 9.5748 -3.7704 6.3421 19 1 10.4430 -3.8904 4.0813 20 1 10.7043 -1.8551 5.3742 21 6 5.3547 -0.1684 5.2966 22 6 4.0220 -0.0070 4.9936 23 6 2.0401 -0.7211 -1.2492 24 6 1.5377 -0.0108 -2.4797 25 8 0.8433 0.9718 -2.3688 26 8 1.8617 -0.4696 -3.6988 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7207 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 1.1850 0.8645 2.3730 36 1 3.4409 -2.9251 3.3830 37 1 5.8215 -3.2447 3.8964 38 1 8.3158 -3.3317 2.7021 39 1 5.8854 0.6029 5.8348 40 1 3.5070 0.8932 5.2947 41 1 3.1300 -0.7207 -1.2494 42 1 1.6768 -1.7488 -1.2493 43 1 1.5162 0.0195 -4.4580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771659948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -186.675243 kcal Electronic energy + Delta-G solvation = -27844.489709 eV Core-core repulsion = 23786.800625 eV Total energy + Delta-G solvation = -4057.689085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53636 -39.35382 -38.88854 -38.06831 -36.91837 -36.74415 -35.77832 -34.14901 -32.03544 -31.25824 -29.52098 -28.15165 -27.59221 -26.97507 -23.27323 -22.97391 -22.84629 -20.41693 -20.01797 -19.39407 -19.05198 -18.59027 -18.05536 -17.56635 -17.18792 -16.90138 -16.75021 -15.86799 -15.72970 -15.66105 -15.12887 -15.05327 -14.89966 -14.47674 -14.10422 -13.98205 -13.88016 -13.63874 -13.55286 -13.13697 -13.05235 -13.01089 -12.90084 -12.86889 -12.85916 -12.63984 -12.56281 -12.19373 -11.99542 -11.91692 -11.82987 -11.76858 -11.51464 -11.30105 -11.19637 -10.96970 -10.29889 -9.75926 -9.51635 -8.85035 -6.62372 -0.26151 0.51814 1.09011 1.29810 1.37463 1.45761 1.50750 2.12910 2.14960 2.36174 2.57761 2.97766 3.54861 3.60278 3.65123 3.82375 3.90654 4.29799 4.34848 4.35563 4.49997 4.58293 4.61482 4.68025 4.82287 4.87163 4.90928 4.93938 4.97713 5.10402 5.13313 5.14580 5.26918 5.27542 5.39978 5.47170 5.55287 5.62607 5.79656 5.84266 5.95751 6.17787 6.21005 6.51735 6.71065 6.83888 7.10506 8.09771 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003338 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.171111 B = 8386.821066 C =10128.455801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.049 4.049 3 C -0.157 4.157 4 C 0.124 3.876 5 N -1.108 6.108 6 S 2.727 3.273 7 O -1.005 7.005 8 O -1.000 7.000 9 C -0.795 4.795 10 C -0.018 4.018 11 C -0.206 4.206 12 C 0.112 3.888 13 C -0.469 4.469 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.792 5.792 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.256 1.256 21 C -0.259 4.259 22 C -0.002 4.002 23 C -0.112 4.112 24 C 0.487 3.513 25 O -0.533 6.533 26 O -0.517 6.517 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.421 0.579 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.299 0.701 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 2.307 -12.517 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.051 4.051 3 C -0.214 4.214 4 C -0.002 4.002 5 N -0.869 5.869 6 S 2.823 3.177 7 O -0.996 6.996 8 O -0.991 6.991 9 C -0.888 4.888 10 C -0.038 4.038 11 C -0.226 4.226 12 C 0.109 3.891 13 C -0.496 4.496 14 H 0.107 0.893 15 C -0.182 4.182 16 N -0.414 5.414 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.186 1.186 20 H -0.180 1.180 21 C -0.280 4.280 22 C -0.022 4.022 23 C -0.149 4.149 24 C 0.331 3.669 25 O -0.423 6.423 26 O -0.330 6.330 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.258 0.742 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.627 1.794 -11.883 13.724 hybrid contribution 1.131 0.580 -0.282 1.302 sum -5.496 2.375 -12.164 13.558 Atomic orbital electron populations 1.22122 0.93540 1.02440 1.03168 1.20432 0.96862 0.95937 0.91852 1.22131 1.00942 0.95083 1.03229 1.21404 0.99172 0.96214 0.83407 1.55303 1.78773 1.30374 1.22486 1.00218 0.73513 0.72073 0.71928 1.93462 1.80286 1.64639 1.61194 1.93458 1.78224 1.41085 1.86291 1.29634 1.25035 1.06487 1.27651 1.20466 0.94223 0.94284 0.94777 1.21354 0.93657 1.00317 1.07289 1.18182 0.93544 0.90010 0.87380 1.20194 0.94430 1.22455 1.12495 0.89349 1.26916 1.04216 0.93451 0.93609 1.69816 1.39210 1.24423 1.07996 0.85148 0.75691 0.79141 0.79286 1.18489 1.18618 1.18046 1.21260 0.95681 0.98960 1.12057 1.20434 0.93772 0.95868 0.92083 1.21480 1.04555 1.01407 0.87505 1.23477 0.76261 0.81910 0.85240 1.90620 1.37129 1.27387 1.87203 1.84519 1.72183 1.59198 1.17146 0.92539 0.90644 0.92221 0.92566 0.90580 0.92332 0.91181 0.89766 0.74221 0.86284 0.86986 0.88980 0.87413 0.85949 0.85876 0.85363 0.71250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 8.01 71.98 0.58 -2.58 16 2 C -0.05 -0.97 0.53 -52.18 -0.03 -1.00 16 3 C -0.16 -3.27 8.00 71.98 0.58 -2.69 16 4 C 0.12 2.98 5.11 86.38 0.44 3.42 16 5 N -1.11 -30.25 5.33 -187.50 -1.00 -31.25 16 6 S 2.73 98.67 5.73 -56.49 -0.32 98.34 16 7 O -1.01 -40.56 17.26 -128.00 -2.21 -42.77 16 8 O -1.00 -40.07 16.74 -128.00 -2.14 -42.21 16 9 C -0.80 -33.61 5.96 22.46 0.13 -33.47 16 10 C -0.02 -0.78 9.49 22.22 0.21 -0.57 16 11 C -0.21 -10.21 8.70 22.73 0.20 -10.02 16 12 C 0.11 5.72 5.58 -21.29 -0.12 5.60 16 13 C -0.47 -23.11 9.05 23.46 0.21 -22.90 16 14 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 15 C 0.04 1.71 5.14 85.26 0.44 2.15 16 16 N -0.79 -36.71 10.95 21.83 0.24 -36.47 16 17 Si 0.99 33.85 29.59 68.60 2.03 35.88 16 18 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 19 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 20 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 21 C -0.26 -12.27 9.80 22.73 0.22 -12.05 16 22 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 23 C -0.11 -1.75 4.88 29.84 0.15 -1.61 16 24 C 0.49 8.22 7.74 71.23 0.55 8.78 16 25 O -0.53 -11.60 12.11 21.95 0.27 -11.33 16 26 O -0.52 -6.49 13.42 -51.41 -0.69 -7.18 16 27 H 0.06 1.17 7.19 -2.39 -0.02 1.15 16 28 H 0.07 1.62 5.52 -2.39 -0.01 1.61 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.68 5.52 -2.39 -0.01 1.67 16 32 H 0.06 1.20 6.60 -2.39 -0.02 1.18 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.97 7.76 -2.38 -0.02 1.95 16 35 H 0.42 9.87 6.47 -96.75 -0.63 9.24 16 36 H 0.12 4.81 7.59 -2.91 -0.02 4.79 16 37 H 0.11 5.67 6.16 -2.91 -0.02 5.65 16 38 H 0.30 12.29 8.30 -92.71 -0.77 11.52 16 39 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.12 4.78 7.60 -2.91 -0.02 4.76 16 41 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 42 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.43 1.90 9.10 -74.06 -0.67 1.23 16 Total: -1.00 -66.41 364.44 -0.29 -66.70 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.23 Total: 37.10 kcal Atomic # 6 Polarization: -70.58 SS G_CDS: 3.77 Total: -66.81 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -0.76 Total: -67.72 kcal Atomic # 8 Polarization: -98.72 SS G_CDS: -4.78 Total: -103.49 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Atomic # 16 Polarization: 98.67 SS G_CDS: -0.32 Total: 98.34 kcal Total: -66.41 -0.29 -66.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771659948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.979 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds