Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.50703 * 109.46906 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00096 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99991 * 180.02562 * 10 9 8 13 13 S 1.65602 * 119.99858 * 180.02562 * 12 10 9 14 14 O 1.42106 * 104.27517 * 181.06806 * 13 12 10 15 15 O 1.42094 * 104.27689 * 308.92677 * 13 12 10 16 16 C 1.81402 * 104.45183 * 64.99838 * 13 12 10 17 17 C 1.52995 * 109.47416 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.47159 * 179.97438 * 17 16 13 19 19 H 1.07992 * 120.00168 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99798 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99970 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00219 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47287 * 89.99642 * 22 20 18 24 24 H 1.48493 * 109.47560 * 210.00111 * 22 20 18 25 25 H 1.48507 * 109.46734 * 330.00188 * 22 20 18 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 34 34 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 35 35 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 36 36 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 37 37 H 0.97001 * 120.00190 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.47052 * 300.00129 * 16 13 12 39 39 H 1.09004 * 109.46869 * 59.99897 * 16 13 12 40 40 H 1.09003 * 109.47288 * 300.00195 * 17 16 13 41 41 H 1.08999 * 109.47092 * 59.99738 * 17 16 13 42 42 H 0.97008 * 119.99883 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 7.5738 2.7062 -1.4449 11 8 8.1800 2.7389 -0.3951 12 7 8.2458 2.7429 -2.6126 13 16 9.8995 2.8307 -2.6138 14 8 10.2470 2.8760 -3.9909 15 8 10.1933 3.9183 -1.7479 16 6 10.4365 1.2643 -1.8730 17 6 11.9649 1.2235 -1.8182 18 6 12.4110 -0.0775 -1.2022 19 1 11.6777 -0.8029 -0.8823 20 6 13.7553 -0.3416 -1.0471 21 7 14.6483 0.5416 -1.4372 22 14 14.3084 -1.9546 -0.2843 23 1 14.4854 -2.9719 -1.3515 24 1 15.5974 -1.7509 0.4241 25 1 13.2817 -2.4233 0.6809 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.8760 3.5065 0.5126 34 1 5.9718 1.7291 0.5125 35 1 5.7537 1.7175 -1.9574 36 1 5.6579 3.4948 -1.9574 37 1 7.7609 2.7171 -3.4523 38 1 10.0340 1.1830 -0.8633 39 1 10.0727 0.4331 -2.4772 40 1 12.3671 1.3046 -2.8281 41 1 12.3291 2.0547 -1.2144 42 1 15.5941 0.3559 -1.3277 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181300513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -139.078471 kcal Electronic energy + Delta-G solvation = -26379.030046 eV Core-core repulsion = 22323.404912 eV Total energy + Delta-G solvation = -4055.625134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59841 -40.06316 -38.04753 -36.68876 -35.60388 -34.43879 -34.10984 -33.88002 -31.17337 -31.03510 -29.85496 -27.70356 -25.64942 -25.26112 -22.89516 -21.92217 -21.57651 -20.85440 -19.32711 -18.24866 -17.82354 -17.38238 -16.73458 -16.51445 -16.37072 -16.12682 -15.97048 -15.31445 -15.10563 -14.78897 -14.54680 -14.43858 -14.09008 -13.58879 -13.47012 -13.23483 -13.19747 -12.60755 -12.50376 -12.31719 -12.21926 -11.87491 -11.78667 -11.71206 -11.60292 -11.41737 -11.35948 -11.11719 -11.06640 -10.98531 -10.84317 -10.42172 -10.35068 -10.22592 -9.69914 -9.18738 -9.14872 -8.55139 -8.48643 -6.10946 -4.16269 0.51469 0.94440 1.10517 2.09376 2.74601 2.87885 3.28051 3.34233 3.37643 3.39021 3.98613 4.15516 4.38712 4.40977 4.51659 4.60744 4.65154 4.70493 4.71984 4.73394 4.82525 4.95870 5.03398 5.04828 5.12818 5.21870 5.24366 5.27905 5.54041 5.61104 5.71219 5.73901 5.86856 5.95491 6.08246 6.29232 6.40874 6.47191 6.64588 7.02155 7.29774 7.36443 7.47170 7.82152 8.18102 8.86666 9.48177 11.00101 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.002212 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.895514 B =12654.496728 C =14022.457474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.214 4.214 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.041 4.041 8 C -0.073 4.073 9 C -0.137 4.137 10 C 0.532 3.468 11 O -0.488 6.488 12 N -1.060 6.060 13 S 2.566 3.434 14 O -0.956 6.956 15 O -0.939 6.939 16 C -0.575 4.575 17 C 0.029 3.971 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.147 4.147 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.429 0.571 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.850 3.220 -0.091 31.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.232 4.232 5 C -0.097 4.097 6 C -0.171 4.171 7 C -0.041 4.041 8 C -0.111 4.111 9 C -0.178 4.178 10 C 0.318 3.682 11 O -0.359 6.359 12 N -0.821 5.821 13 S 2.666 3.334 14 O -0.946 6.946 15 O -0.929 6.929 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.166 4.166 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.263 0.737 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -29.677 3.873 0.350 29.931 hybrid contribution -0.443 -1.283 0.080 1.360 sum -30.121 2.591 0.430 30.235 Atomic orbital electron populations 1.23054 0.78371 1.04004 1.01301 1.86090 1.21392 1.26968 1.88681 1.19023 0.92325 0.84158 0.96281 1.21231 0.99968 0.92492 1.09534 1.20933 0.94606 0.96952 0.97193 1.21033 0.93705 0.98232 1.04094 1.19659 0.95457 0.92201 0.96818 1.20454 0.89773 1.05502 0.95356 1.21788 0.90643 1.05689 0.99709 1.20658 0.91561 0.73385 0.82564 1.90920 1.70236 1.44648 1.30138 1.55441 1.30613 1.80927 1.15143 1.06674 0.72231 0.79321 0.75131 1.93589 1.80336 1.87989 1.32714 1.93594 1.81053 1.50406 1.67838 1.30335 1.11542 1.16510 1.12619 1.18987 0.82708 1.00147 0.99143 1.20973 0.91900 1.01700 1.41225 0.91978 1.25072 0.96688 0.97320 0.95462 1.69958 1.01460 1.34775 1.46641 0.86442 0.78200 0.83157 0.79326 1.20484 1.20998 1.19719 1.20371 0.91313 0.98437 1.06481 0.92667 0.92660 0.88200 0.85655 0.85764 0.85611 0.89275 0.89306 0.87610 0.87750 0.73662 0.85070 0.86091 0.94781 0.94578 0.92527 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.80 10.50 -19.44 -0.20 -3.00 16 3 C 0.13 1.14 6.69 -39.22 -0.26 0.88 16 4 C -0.21 -1.60 9.04 -39.43 -0.36 -1.96 16 5 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 6 C -0.15 -1.17 9.70 -39.56 -0.38 -1.56 16 7 C -0.04 -0.35 5.13 -104.65 -0.54 -0.88 16 8 C -0.07 -0.64 4.63 -27.88 -0.13 -0.77 16 9 C -0.14 -1.07 5.68 -27.88 -0.16 -1.23 16 10 C 0.53 6.56 7.57 -10.98 -0.08 6.48 16 11 O -0.49 -8.10 14.09 -11.59 -0.16 -8.27 16 12 N -1.06 -12.76 5.60 31.22 0.17 -12.58 16 13 S 2.57 45.92 5.11 -107.50 -0.55 45.37 16 14 O -0.96 -18.76 18.08 -57.54 -1.04 -19.80 16 15 O -0.94 -20.39 17.04 -64.80 -1.10 -21.50 16 16 C -0.58 -11.35 5.82 37.15 0.22 -11.14 16 17 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 18 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 22 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.15 -1.33 9.64 -39.44 -0.38 -1.71 16 27 H 0.05 0.22 7.67 -51.93 -0.40 -0.18 16 28 H 0.05 0.21 7.65 -51.93 -0.40 -0.19 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.13 0.68 6.30 -52.49 -0.33 0.35 16 31 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.09 0.82 8.04 -51.93 -0.42 0.41 16 34 H 0.09 0.83 8.04 -51.93 -0.42 0.42 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.43 3.32 8.79 -34.47 -0.30 3.02 16 38 H 0.13 2.54 7.19 -51.92 -0.37 2.17 16 39 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -38.29 380.62 -9.45 -47.74 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.98 Total: 0.20 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -2.03 Total: -24.41 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.91 Total: -38.53 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -2.51 Total: -52.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 45.92 SS G_CDS: -0.55 Total: 45.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.29 -9.45 -47.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181300513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.339 kcal (2) G-P(sol) polarization free energy of solvation -38.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds