Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.50703 * 109.46906 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00096 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99991 * 180.02562 * 10 9 8 13 13 S 1.65602 * 119.99858 * 180.02562 * 12 10 9 14 14 O 1.42106 * 104.27517 * 181.06806 * 13 12 10 15 15 O 1.42094 * 104.27689 * 308.92677 * 13 12 10 16 16 C 1.81402 * 104.45183 * 64.99838 * 13 12 10 17 17 C 1.52995 * 109.47416 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.47159 * 179.97438 * 17 16 13 19 19 H 1.07992 * 120.00168 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99798 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99970 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00219 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47287 * 89.99642 * 22 20 18 24 24 H 1.48493 * 109.47560 * 210.00111 * 22 20 18 25 25 H 1.48507 * 109.46734 * 330.00188 * 22 20 18 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 34 34 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 35 35 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 36 36 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 37 37 H 0.97001 * 120.00190 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.47052 * 300.00129 * 16 13 12 39 39 H 1.09004 * 109.46869 * 59.99897 * 16 13 12 40 40 H 1.09003 * 109.47288 * 300.00195 * 17 16 13 41 41 H 1.08999 * 109.47092 * 59.99738 * 17 16 13 42 42 H 0.97008 * 119.99883 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 7.5738 2.7062 -1.4449 11 8 8.1800 2.7389 -0.3951 12 7 8.2458 2.7429 -2.6126 13 16 9.8995 2.8307 -2.6138 14 8 10.2470 2.8760 -3.9909 15 8 10.1933 3.9183 -1.7479 16 6 10.4365 1.2643 -1.8730 17 6 11.9649 1.2235 -1.8182 18 6 12.4110 -0.0775 -1.2022 19 1 11.6777 -0.8029 -0.8823 20 6 13.7553 -0.3416 -1.0471 21 7 14.6483 0.5416 -1.4372 22 14 14.3084 -1.9546 -0.2843 23 1 14.4854 -2.9719 -1.3515 24 1 15.5974 -1.7509 0.4241 25 1 13.2817 -2.4233 0.6809 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.8760 3.5065 0.5126 34 1 5.9718 1.7291 0.5125 35 1 5.7537 1.7175 -1.9574 36 1 5.6579 3.4948 -1.9574 37 1 7.7609 2.7171 -3.4523 38 1 10.0340 1.1830 -0.8633 39 1 10.0727 0.4331 -2.4772 40 1 12.3671 1.3046 -2.8281 41 1 12.3291 2.0547 -1.2144 42 1 15.5941 0.3559 -1.3277 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181300513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = -167.065668 kcal Electronic energy + Delta-G solvation = -26380.243662 eV Core-core repulsion = 22323.404912 eV Total energy + Delta-G solvation = -4056.838750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.36175 -40.91650 -38.63070 -38.25424 -37.20049 -35.95357 -35.56433 -34.76694 -33.17186 -31.59175 -30.48223 -28.12261 -27.64683 -26.04068 -23.67635 -23.44683 -22.65617 -21.55228 -20.67248 -19.31067 -18.96252 -18.53956 -18.19259 -17.47186 -17.17308 -16.89855 -16.66208 -16.60615 -16.55092 -16.44326 -15.78632 -15.25107 -15.06984 -14.67368 -14.49729 -14.22132 -13.95768 -13.82742 -13.78980 -13.68657 -13.34531 -13.23281 -12.95309 -12.93620 -12.84110 -12.77403 -12.44212 -12.29917 -12.23771 -12.02481 -11.98430 -11.87730 -11.74467 -11.65931 -11.33294 -11.04558 -10.65675 -9.75608 -9.11862 -8.27591 -6.41473 -0.96890 0.36526 0.52961 1.07151 1.39745 1.42107 1.48476 1.53413 2.36682 2.40575 2.59894 2.80583 3.05401 3.06966 3.30460 3.81798 3.91632 3.92903 4.01872 4.06862 4.10469 4.19157 4.31489 4.34144 4.41103 4.49005 4.57696 4.65188 4.69311 4.70264 4.75914 4.98039 5.10807 5.22972 5.23574 5.24649 5.38855 5.53920 5.66168 5.71034 5.73825 5.87019 6.03838 6.49403 6.50511 6.71085 7.28259 8.84692 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.002212 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.895514 B =12654.496728 C =14022.457474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.112 3.888 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.159 4.159 7 C -0.044 4.044 8 C -0.072 4.072 9 C -0.125 4.125 10 C 0.531 3.469 11 O -0.532 6.532 12 N -1.037 6.037 13 S 2.602 3.398 14 O -0.973 6.973 15 O -0.979 6.979 16 C -0.580 4.580 17 C 0.022 3.978 18 C -0.540 4.540 19 H 0.073 0.927 20 C -0.004 4.004 21 N -0.932 5.932 22 Si 0.976 3.024 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.261 1.261 26 C -0.165 4.165 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.451 0.549 38 H 0.134 0.866 39 H 0.151 0.849 40 H 0.015 0.985 41 H 0.004 0.996 42 H 0.268 0.732 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.739 2.510 -0.455 33.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.067 3.933 4 C -0.234 4.234 5 C -0.098 4.098 6 C -0.177 4.177 7 C -0.044 4.044 8 C -0.110 4.110 9 C -0.166 4.166 10 C 0.320 3.680 11 O -0.406 6.406 12 N -0.805 5.805 13 S 2.700 3.300 14 O -0.963 6.963 15 O -0.969 6.969 16 C -0.713 4.713 17 C -0.017 4.017 18 C -0.579 4.579 19 H 0.091 0.909 20 C -0.203 4.203 21 N -0.572 5.572 22 Si 0.799 3.201 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.185 1.185 26 C -0.184 4.184 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.292 0.708 38 H 0.152 0.848 39 H 0.169 0.831 40 H 0.033 0.967 41 H 0.023 0.977 42 H 0.077 0.923 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -32.586 3.147 -0.047 32.737 hybrid contribution 0.307 -1.021 0.189 1.083 sum -32.279 2.126 0.142 32.350 Atomic orbital electron populations 1.23307 0.76568 1.05370 1.02233 1.86055 1.23397 1.27248 1.88783 1.19223 0.92541 0.84799 0.96784 1.21504 1.01029 0.92143 1.08753 1.21254 0.94625 0.97749 0.96183 1.21262 0.94188 0.98480 1.03789 1.19582 0.94995 0.92380 0.97421 1.20399 0.90207 1.04595 0.95805 1.21890 0.86423 1.08496 0.99831 1.21561 0.93281 0.71681 0.81463 1.90917 1.71273 1.46698 1.31741 1.54866 1.28276 1.80559 1.16769 1.05284 0.73373 0.77565 0.73750 1.93560 1.81758 1.87781 1.33234 1.93543 1.82801 1.51666 1.68935 1.30242 1.07329 1.19708 1.13973 1.18824 0.87102 0.98551 0.97208 1.21469 0.92599 1.02658 1.41142 0.90857 1.26129 0.96905 1.01343 0.95917 1.70099 1.01899 1.37130 1.48031 0.85286 0.77768 0.78341 0.78696 1.19221 1.20744 1.18501 1.20477 0.91792 0.98645 1.07450 0.91812 0.91561 0.86772 0.83737 0.83422 0.84313 0.90070 0.90542 0.84680 0.84650 0.70808 0.84805 0.83139 0.96678 0.97727 0.92321 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.66 10.50 -92.48 -0.97 -6.63 16 3 C 0.11 1.87 6.69 22.50 0.15 2.02 16 4 C -0.22 -2.77 9.04 22.37 0.20 -2.56 16 5 C -0.08 -0.93 10.04 22.26 0.22 -0.71 16 6 C -0.16 -2.09 9.70 22.28 0.22 -1.87 16 7 C -0.04 -0.67 5.13 -19.88 -0.10 -0.77 16 8 C -0.07 -1.17 4.63 29.85 0.14 -1.03 16 9 C -0.13 -1.62 5.68 29.85 0.17 -1.45 16 10 C 0.53 12.20 7.57 87.66 0.66 12.87 16 11 O -0.53 -17.54 14.09 13.39 0.19 -17.35 16 12 N -1.04 -22.93 5.60 -173.53 -0.97 -23.90 16 13 S 2.60 92.74 5.11 -56.49 -0.29 92.45 16 14 O -0.97 -37.76 18.08 -127.65 -2.31 -40.07 16 15 O -0.98 -43.38 17.04 -120.71 -2.06 -45.43 16 16 C -0.58 -23.00 5.82 71.98 0.42 -22.58 16 17 C 0.02 1.19 4.98 29.85 0.15 1.34 16 18 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 19 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 20 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 21 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 22 Si 0.98 44.19 29.54 68.60 2.03 46.21 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 C -0.16 -2.84 9.64 22.36 0.22 -2.62 16 27 H 0.06 0.38 7.67 -2.39 -0.02 0.36 16 28 H 0.07 0.37 7.65 -2.39 -0.02 0.35 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.14 1.18 6.30 -2.91 -0.02 1.16 16 31 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 34 H 0.08 1.42 8.04 -2.39 -0.02 1.40 16 35 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.45 5.59 8.79 -96.74 -0.85 4.74 16 38 H 0.13 5.24 7.19 -2.39 -0.02 5.22 16 39 H 0.15 4.94 8.14 -2.39 -0.02 4.92 16 40 H 0.01 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 43 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -85.69 380.62 0.34 -85.35 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.18 Total: 12.91 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 4.25 Total: -46.39 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -0.69 Total: -81.04 kcal Atomic # 8 Polarization: -104.35 SS G_CDS: -5.15 Total: -109.49 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 92.74 SS G_CDS: -0.29 Total: 92.45 kcal Total: -85.69 0.34 -85.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181300513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.713 kcal (2) G-P(sol) polarization free energy of solvation -85.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds