Wall clock time and date at job start Sat Apr 11 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99579 * 2 1 4 4 S 1.65592 * 120.00035 * 180.02562 * 2 1 3 5 5 O 1.42091 * 104.28035 * 333.92634 * 4 2 1 6 6 O 1.42098 * 104.27696 * 206.06549 * 4 2 1 7 7 C 1.81408 * 104.45099 * 89.99967 * 4 2 1 8 8 C 1.52996 * 109.47121 * 179.97438 * 7 4 2 9 9 C 1.52999 * 109.47209 * 179.97438 * 8 7 4 10 10 O 1.45202 * 109.47398 * 180.02562 * 9 8 7 11 11 C 1.34708 * 116.99988 * 180.02562 * 10 9 8 12 12 O 1.21465 * 120.00087 * 359.97438 * 11 10 9 13 13 C 1.47771 * 119.99877 * 179.97438 * 11 10 9 14 14 C 1.39966 * 120.02752 * 359.97438 * 13 11 10 15 15 C 1.38311 * 120.35000 * 180.02562 * 14 13 11 16 16 C 1.37761 * 120.42100 * 359.97438 * 15 14 13 17 17 C 1.40756 * 120.05029 * 0.02562 * 16 15 14 18 18 C 1.41434 * 120.18092 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99456 * 24.42404 * 18 17 16 20 20 C 1.39932 * 120.00288 * 204.42465 * 18 17 16 21 21 N 1.30824 * 120.00201 * 17.83811 * 20 18 17 22 22 Si 1.86806 * 119.99927 * 197.83727 * 20 18 17 23 23 H 1.48493 * 109.47137 * 90.00133 * 22 20 18 24 24 H 1.48497 * 109.46825 * 210.00040 * 22 20 18 25 25 H 1.48496 * 109.47026 * 330.00010 * 22 20 18 26 26 C 1.39043 * 120.02867 * 179.97438 * 13 11 10 27 27 H 1.09004 * 109.47050 * 239.99143 * 1 2 3 28 28 H 1.09001 * 109.47401 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47446 * 119.99741 * 1 2 3 30 30 H 1.08998 * 109.47471 * 269.99957 * 3 2 1 31 31 H 1.08999 * 109.46884 * 30.00918 * 3 2 1 32 32 H 1.09002 * 109.46767 * 150.00150 * 3 2 1 33 33 H 1.08996 * 109.47124 * 59.99312 * 7 4 2 34 34 H 1.09004 * 109.46620 * 299.99636 * 7 4 2 35 35 H 1.09004 * 109.47333 * 59.99936 * 8 7 4 36 36 H 1.08996 * 109.47247 * 299.99758 * 8 7 4 37 37 H 1.09004 * 109.46622 * 59.99994 * 9 8 7 38 38 H 1.08996 * 109.47222 * 300.00268 * 9 8 7 39 39 H 1.07996 * 119.82893 * 0.02562 * 14 13 11 40 40 H 1.08008 * 119.79362 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.97658 * 179.97438 * 16 15 14 42 42 H 0.96997 * 120.00007 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.21032 * 359.70694 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.3971 -2.3563 0.6042 6 8 3.5395 -1.1193 0.6046 7 6 2.5193 -1.8253 -1.7575 8 6 3.2819 -3.1449 -1.8920 9 6 3.4723 -3.4752 -3.3737 10 8 4.1955 -4.7278 -3.5014 11 6 4.4476 -5.1638 -4.7508 12 8 4.0731 -4.5157 -5.7073 13 6 5.1797 -6.4307 -4.9575 14 6 5.6120 -7.1777 -3.8556 15 6 6.2983 -8.3641 -4.0414 16 6 6.5639 -8.8246 -5.3123 17 6 6.1371 -8.0872 -6.4328 18 6 6.4088 -8.5572 -7.7388 19 1 6.5716 -9.6110 -7.9104 20 6 6.4668 -7.6568 -8.8085 21 7 6.6203 -6.3780 -8.5795 22 14 6.3249 -8.2811 -10.5634 23 1 4.8972 -8.2897 -10.9718 24 1 7.0935 -7.3901 -11.4693 25 1 6.8712 -9.6595 -10.6441 26 6 5.4398 -6.8816 -6.2468 27 1 -0.3633 -0.5140 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 2.3791 1.5835 -1.0276 31 1 1.6083 2.0283 0.5140 32 1 3.1499 1.1384 0.5138 33 1 3.0865 -1.0277 -2.2372 34 1 1.5451 -1.9178 -2.2375 35 1 2.7151 -3.9427 -1.4121 36 1 4.2561 -3.0520 -1.4120 37 1 4.0390 -2.6774 -3.8538 38 1 2.4980 -3.5681 -3.8533 39 1 5.4086 -6.8259 -2.8550 40 1 6.6273 -8.9336 -3.1847 41 1 7.1006 -9.7517 -5.4491 42 1 6.6608 -5.7540 -9.3210 43 1 5.1041 -6.3110 -7.1002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184793177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:11 Heat of formation + Delta-G solvation = -162.720278 kcal Electronic energy + Delta-G solvation = -26372.282571 eV Core-core repulsion = 22315.632251 eV Total energy + Delta-G solvation = -4056.650320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48883 -39.24526 -38.31824 -37.71105 -37.26055 -36.89775 -35.66329 -35.20117 -32.22387 -31.37747 -28.92497 -28.50960 -27.23725 -25.66506 -24.84996 -22.99803 -22.82721 -21.58387 -19.95439 -19.64268 -18.72709 -18.26877 -17.85004 -17.77391 -17.36324 -17.26649 -16.67404 -16.45734 -16.02470 -15.42937 -15.32729 -15.23924 -15.08783 -14.43119 -14.28543 -14.16161 -14.15253 -13.86296 -13.62718 -13.52340 -13.26240 -13.22249 -13.02494 -12.91091 -12.84028 -12.59958 -12.55813 -12.51634 -12.49560 -12.22217 -12.06875 -11.83589 -11.60760 -11.55401 -11.29385 -11.11001 -9.99657 -9.63498 -9.46134 -8.69961 -6.40924 -0.87402 0.10610 0.95356 1.37560 1.45878 1.51810 1.52990 1.69896 1.77819 2.18569 2.70662 2.75974 3.08470 3.41450 3.60895 3.63696 3.66390 3.85816 4.02442 4.07643 4.28265 4.41794 4.48255 4.54419 4.56034 4.62205 4.68877 4.74618 4.79057 4.88864 4.98853 5.01547 5.04049 5.04468 5.11809 5.25840 5.27246 5.43494 5.56318 5.80102 5.88277 5.99822 6.21682 6.51675 6.77542 6.85078 6.87443 8.27694 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.001953 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.453558 B =14335.834777 C =15087.219648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.008 6.008 3 C 0.072 3.928 4 S 2.625 3.375 5 O -0.985 6.985 6 O -0.985 6.985 7 C -0.615 4.615 8 C -0.116 4.116 9 C 0.064 3.936 10 O -0.352 6.352 11 C 0.517 3.483 12 O -0.544 6.544 13 C -0.130 4.130 14 C -0.183 4.183 15 C -0.099 4.099 16 C -0.203 4.203 17 C 0.065 3.935 18 C -0.493 4.493 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.826 5.826 22 Si 0.985 3.015 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.251 1.251 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.288 0.712 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 14.843 13.241 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.848 5.848 3 C -0.073 4.073 4 S 2.720 3.280 5 O -0.975 6.975 6 O -0.976 6.976 7 C -0.745 4.745 8 C -0.155 4.155 9 C -0.011 4.011 10 O -0.269 6.269 11 C 0.365 3.635 12 O -0.436 6.436 13 C -0.131 4.131 14 C -0.202 4.202 15 C -0.117 4.117 16 C -0.223 4.223 17 C 0.062 3.938 18 C -0.522 4.522 19 H 0.106 0.894 20 C -0.186 4.186 21 N -0.452 5.452 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.174 1.174 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.760 14.871 13.676 22.890 hybrid contribution -0.093 0.261 -1.694 1.717 sum -10.853 15.132 11.981 22.143 Atomic orbital electron populations 1.21791 0.76920 1.05400 1.02471 1.57163 1.16034 1.21410 1.90222 1.21884 0.97311 0.84514 1.03578 1.04415 0.72902 0.73050 0.77664 1.93555 1.65215 1.63936 1.74773 1.93551 1.45743 1.83430 1.74842 1.30505 1.11769 1.05928 1.26321 1.21260 1.02641 0.95993 0.95623 1.23194 0.96845 0.83222 0.97793 1.86532 1.69802 1.40841 1.29749 1.21644 0.75950 0.85393 0.80509 1.90736 1.51556 1.58173 1.43154 1.19091 1.04815 0.93614 0.95625 1.20974 1.05333 0.97029 0.96870 1.20971 0.98080 0.95796 0.96863 1.21506 1.05748 1.02522 0.92537 1.17921 0.89958 0.91514 0.94376 1.19865 1.44382 0.95890 0.92039 0.89429 1.26872 0.91103 0.94357 1.06225 1.69867 1.34469 1.04598 1.36216 0.85153 0.79296 0.79668 0.75344 1.19022 1.19445 1.17402 1.21469 0.99767 0.98705 0.94309 0.92508 0.87692 0.90768 0.90602 0.88695 0.91023 0.82219 0.82127 0.88549 0.88696 0.90530 0.90271 0.84928 0.84156 0.86658 0.90110 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.26 127.77 1.31 1.93 16 2 N -1.01 -11.46 3.52 -562.68 -1.98 -13.44 16 3 C 0.07 0.57 10.61 127.77 1.36 1.92 16 4 S 2.62 44.68 5.42 -56.49 -0.31 44.37 16 5 O -0.98 -23.35 17.10 -127.65 -2.18 -25.54 16 6 O -0.99 -23.39 16.57 -127.65 -2.12 -25.51 16 7 C -0.62 -7.61 6.18 71.98 0.44 -7.16 16 8 C -0.12 -2.26 5.60 30.59 0.17 -2.09 16 9 C 0.06 1.69 5.48 71.98 0.39 2.09 16 10 O -0.35 -12.60 9.46 -56.18 -0.53 -13.13 16 11 C 0.52 23.13 7.90 70.34 0.56 23.69 16 12 O -0.54 -26.75 16.12 19.95 0.32 -26.43 16 13 C -0.13 -6.29 5.87 -20.14 -0.12 -6.41 16 14 C -0.18 -7.68 9.62 22.71 0.22 -7.47 16 15 C -0.10 -4.02 10.01 22.17 0.22 -3.79 16 16 C -0.20 -9.38 9.78 22.77 0.22 -9.16 16 17 C 0.06 3.45 5.57 -21.32 -0.12 3.33 16 18 C -0.49 -26.09 9.05 23.47 0.21 -25.88 16 19 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 20 C 0.03 1.50 5.14 85.25 0.44 1.94 16 21 N -0.83 -44.70 10.96 21.82 0.24 -44.47 16 22 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 26 C -0.12 -6.70 8.23 23.02 0.19 -6.51 16 27 H 0.06 0.60 7.90 -2.38 -0.02 0.58 16 28 H 0.10 0.30 7.79 -2.39 -0.02 0.29 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.09 0.40 7.92 -2.39 -0.02 0.38 16 32 H 0.07 0.79 6.91 -2.39 -0.02 0.77 16 33 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.95 8.14 -2.38 -0.02 1.94 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.13 4.78 7.59 -2.91 -0.02 4.76 16 40 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 43 H 0.11 6.36 5.75 -2.91 -0.02 6.34 16 Total: -1.00 -75.92 380.67 1.99 -73.93 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.01 Total: 23.36 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 5.50 Total: -33.58 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -1.74 Total: -57.90 kcal Atomic # 8 Polarization: -86.10 SS G_CDS: -4.51 Total: -90.61 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 44.68 SS G_CDS: -0.31 Total: 44.37 kcal Total: -75.92 1.99 -73.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184793177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.791 kcal (2) G-P(sol) polarization free energy of solvation -75.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds