Wall clock time and date at job start Sat Apr 11 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40068 * 125.94826 * 2 1 4 4 C 1.31867 * 108.22907 * 180.02562 * 3 2 1 5 5 C 1.47695 * 125.97843 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99930 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00039 * 0.02562 * 5 4 3 8 8 C 1.40092 * 119.99817 * 180.02562 * 7 5 4 9 9 C 1.40424 * 125.97824 * 0.02562 * 8 7 5 10 10 C 1.35228 * 107.87052 * 179.77336 * 9 8 7 11 11 N 1.34975 * 107.86507 * 0.36408 * 10 9 8 12 12 C 1.46496 * 125.97839 * 179.89472 * 11 10 9 13 13 C 1.50701 * 109.47158 * 124.71865 * 12 11 10 14 14 H 1.07995 * 119.99852 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00032 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99967 * 359.71794 * 15 13 12 17 17 Si 1.86794 * 119.99861 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47141 * 179.72176 * 17 15 13 19 19 H 1.48500 * 109.47134 * 299.71879 * 17 15 13 20 20 H 1.48493 * 109.47532 * 59.72186 * 17 15 13 21 21 N 1.31232 * 125.97567 * 180.02562 * 8 7 5 22 22 C 1.41066 * 108.03752 * 0.26169 * 4 3 2 23 23 C 1.35595 * 107.79531 * 359.56791 * 22 4 3 24 24 O 1.35767 * 126.08035 * 180.16079 * 23 22 4 25 25 C 1.42901 * 117.00236 * 2.59879 * 24 23 22 26 26 F 1.39893 * 109.47424 * 298.81893 * 25 24 23 27 27 F 1.39902 * 109.46729 * 58.81706 * 25 24 23 28 28 H 1.09004 * 109.47054 * 85.20929 * 1 2 3 29 29 H 1.09001 * 109.47114 * 205.20293 * 1 2 3 30 30 H 1.09000 * 109.47661 * 325.20569 * 1 2 3 31 31 H 0.96992 * 119.99993 * 359.97438 * 7 5 4 32 32 H 1.08000 * 126.06217 * 359.97438 * 9 8 7 33 33 H 1.07996 * 126.07321 * 180.22754 * 10 9 8 34 34 H 1.09007 * 109.47064 * 4.71791 * 12 11 10 35 35 H 1.09004 * 109.47462 * 244.72082 * 12 11 10 36 36 H 0.97000 * 119.99569 * 0.28184 * 16 15 13 37 37 H 1.08000 * 126.09796 * 179.73977 * 22 4 3 38 38 H 1.08993 * 109.46941 * 178.81189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5433 0.7326 -0.0006 5 6 4.7336 1.6070 -0.0002 6 8 5.8470 1.1183 -0.0013 7 7 4.5857 2.9466 0.0013 8 6 5.7147 3.7760 0.0010 9 6 7.0523 3.3486 -0.0012 10 6 7.8394 4.4482 -0.0057 11 7 7.0357 5.5326 0.0018 12 6 7.4757 6.9299 0.0024 13 6 6.8477 7.6549 -1.1599 14 1 6.1872 7.1274 -1.8321 15 6 7.1171 8.9914 -1.3657 16 7 7.9179 9.6348 -0.5445 17 14 6.3392 9.8898 -2.8069 18 1 6.7803 11.3078 -2.8026 19 1 6.7586 9.2448 -4.0770 20 1 4.8603 9.8312 -2.6868 21 7 5.7073 5.0883 0.0028 22 6 3.5512 -0.6780 -0.0071 23 6 2.2625 -1.0997 -0.0006 24 8 1.8437 -2.3911 -0.0007 25 6 2.8538 -3.4007 0.0494 26 9 3.6759 -3.2943 -1.0775 27 9 3.6235 -3.2332 1.2056 28 1 -0.3633 0.0858 -1.0241 29 1 -0.3633 -0.9298 0.4376 30 1 -0.3634 0.8439 0.5864 31 1 3.6975 3.3365 0.0017 32 1 7.3922 2.3234 -0.0026 33 1 8.9193 4.4573 -0.0118 34 1 8.5613 6.9690 -0.0886 35 1 7.1720 7.4061 0.9347 36 1 8.3221 9.1681 0.2036 37 1 4.4273 -1.3095 -0.0130 38 1 2.3840 -4.3841 0.0650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185606350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:14 Heat of formation + Delta-G solvation = -4.605952 kcal Electronic energy + Delta-G solvation = -28332.521634 eV Core-core repulsion = 23657.639687 eV Total energy + Delta-G solvation = -4674.881947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.80817 -47.86945 -41.93479 -40.68777 -39.26572 -38.56692 -34.89846 -33.89823 -33.56075 -30.98235 -30.12085 -29.37154 -27.82715 -26.86291 -26.16088 -24.10243 -22.81481 -21.88080 -21.29285 -20.39481 -19.81493 -18.94295 -18.51724 -18.49006 -17.20378 -17.17054 -16.60440 -16.47729 -16.46828 -15.29397 -15.23904 -15.05687 -14.71026 -14.52693 -14.27030 -14.24407 -14.04216 -13.99404 -13.76531 -13.35294 -13.19969 -13.00735 -12.81157 -12.63765 -12.42712 -12.21944 -11.83282 -11.40982 -11.14605 -10.80309 -10.48823 -10.20230 -10.14263 -9.78450 -9.69234 -9.02644 -8.98493 -8.56270 -8.20327 -7.52806 -6.56309 -4.30117 0.94074 1.06990 1.65997 2.27701 2.63554 2.67884 2.94145 3.08629 3.39736 3.41628 3.59920 3.66439 3.68288 3.73980 3.95652 4.01871 4.42279 4.46274 4.65693 4.71690 4.94599 4.99874 5.12271 5.17599 5.46450 5.55811 5.72252 5.89335 6.15407 6.37146 6.41922 6.51798 6.59231 6.76571 6.93805 7.30707 7.47963 7.71537 7.84226 8.11355 8.36310 8.54302 8.63555 9.37896 10.81332 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.002125 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.443119 B =13175.272662 C =13984.506262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.350 5.350 3 N -0.235 5.235 4 C 0.066 3.934 5 C 0.607 3.393 6 O -0.498 6.498 7 N -0.614 5.614 8 C 0.258 3.742 9 C -0.283 4.283 10 C 0.052 3.948 11 N -0.316 5.316 12 C 0.249 3.751 13 C -0.608 4.608 14 H 0.064 0.936 15 C 0.023 3.977 16 N -0.905 5.905 17 Si 1.077 2.923 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.285 1.285 21 N -0.297 5.297 22 C -0.260 4.260 23 C 0.260 3.740 24 O -0.316 6.316 25 C 0.428 3.572 26 F -0.190 7.190 27 F -0.190 7.190 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.418 0.582 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.267 0.733 37 H 0.167 0.833 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -28.417 2.327 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.142 5.142 3 N -0.066 5.066 4 C -0.101 4.101 5 C 0.389 3.611 6 O -0.368 6.368 7 N -0.261 5.261 8 C 0.005 3.995 9 C -0.315 4.315 10 C -0.098 4.098 11 N -0.098 5.098 12 C 0.131 3.869 13 C -0.646 4.646 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.540 5.540 17 Si 0.904 3.096 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.211 1.211 21 N -0.128 5.128 22 C -0.291 4.291 23 C 0.092 3.908 24 O -0.229 6.229 25 C 0.338 3.662 26 F -0.171 7.171 27 F -0.172 7.172 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.255 0.745 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.185 0.815 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.810 -25.268 1.587 29.849 hybrid contribution 0.765 -2.749 0.763 2.953 sum -15.045 -28.017 2.350 31.888 Atomic orbital electron populations 1.22052 0.72671 1.05128 1.04364 1.48618 1.07066 1.00585 1.57925 1.77890 1.00518 1.04472 1.23720 1.21610 0.91772 0.93709 1.03025 1.16675 0.86630 0.80569 0.77213 1.90763 1.23917 1.74350 1.47820 1.42195 1.08312 1.04402 1.71237 1.19024 0.87135 0.89609 1.03736 1.21542 0.89936 1.00305 1.19677 1.22565 0.98066 0.86702 1.02444 1.48823 1.01454 1.07604 1.51911 1.19777 0.95481 0.72360 0.99295 1.22107 1.32305 0.97710 1.12467 0.91809 1.25924 0.95674 0.94482 1.02118 1.70853 1.28626 1.39485 1.15062 0.83418 0.75908 0.75980 0.74320 1.20541 1.21233 1.21131 1.77383 1.00090 1.07725 1.27551 1.21148 0.95167 0.94586 1.18163 1.18552 0.89602 0.80729 1.01903 1.86341 1.36075 1.11446 1.89040 1.23469 0.78252 0.92193 0.72321 1.93161 1.74619 1.96531 1.52818 1.93163 1.77412 1.96084 1.50500 0.89912 0.88786 0.88420 0.74542 0.82005 0.81341 0.93542 0.94701 0.92279 0.81512 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.44 59.84 0.68 1.20 16 2 N -0.35 -3.53 4.03 -68.19 -0.28 -3.80 16 3 N -0.24 -3.01 12.26 33.34 0.41 -2.60 16 4 C 0.07 0.93 7.09 -82.92 -0.59 0.34 16 5 C 0.61 10.05 7.79 -12.40 -0.10 9.96 16 6 O -0.50 -9.24 14.02 5.29 0.07 -9.16 16 7 N -0.61 -10.68 5.44 -12.03 -0.07 -10.74 16 8 C 0.26 5.42 8.11 -154.44 -1.25 4.17 16 9 C -0.28 -5.75 9.60 -39.83 -0.38 -6.13 16 10 C 0.05 1.05 11.43 -17.24 -0.20 0.86 16 11 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 12 C 0.25 6.37 5.57 -5.20 -0.03 6.34 16 13 C -0.61 -17.29 9.24 -34.44 -0.32 -17.60 16 14 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 15 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 16 N -0.90 -26.53 13.65 55.43 0.76 -25.78 16 17 Si 1.08 25.20 29.90 -169.99 -5.08 20.12 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 N -0.30 -7.08 12.42 31.43 0.39 -6.69 16 22 C -0.26 -3.24 8.80 -39.45 -0.35 -3.59 16 23 C 0.26 2.67 7.46 -16.72 -0.12 2.55 16 24 O -0.32 -2.22 10.36 -19.01 -0.20 -2.42 16 25 C 0.43 2.06 5.99 101.05 0.61 2.67 16 26 F -0.19 -1.40 16.07 2.25 0.04 -1.37 16 27 F -0.19 -1.39 16.12 2.25 0.04 -1.36 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.30 8.04 -51.93 -0.42 -0.12 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.42 6.48 8.52 -40.82 -0.35 6.13 16 32 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 33 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 34 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 35 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 36 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 37 H 0.17 2.04 6.61 -52.49 -0.35 1.69 16 38 H 0.19 -0.19 8.14 -51.93 -0.42 -0.61 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -36.43 349.81 -4.46 -40.89 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.44 Total: 4.08 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.14 Total: 1.30 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.99 Total: -57.36 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.12 Total: -11.58 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.07 Total: -2.72 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.43 -4.46 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185606350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.287 kcal (2) G-P(sol) polarization free energy of solvation -36.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds