Wall clock time and date at job start Sat Apr 11 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40068 * 125.94826 * 2 1 4 4 C 1.31867 * 108.22907 * 180.02562 * 3 2 1 5 5 C 1.47695 * 125.97843 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99930 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00039 * 0.02562 * 5 4 3 8 8 C 1.40092 * 119.99817 * 180.02562 * 7 5 4 9 9 C 1.40424 * 125.97824 * 0.02562 * 8 7 5 10 10 C 1.35228 * 107.87052 * 179.77336 * 9 8 7 11 11 N 1.34975 * 107.86507 * 0.36408 * 10 9 8 12 12 C 1.46496 * 125.97839 * 179.89472 * 11 10 9 13 13 C 1.50701 * 109.47158 * 124.71865 * 12 11 10 14 14 H 1.07995 * 119.99852 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00032 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99967 * 359.71794 * 15 13 12 17 17 Si 1.86794 * 119.99861 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47141 * 179.72176 * 17 15 13 19 19 H 1.48500 * 109.47134 * 299.71879 * 17 15 13 20 20 H 1.48493 * 109.47532 * 59.72186 * 17 15 13 21 21 N 1.31232 * 125.97567 * 180.02562 * 8 7 5 22 22 C 1.41066 * 108.03752 * 0.26169 * 4 3 2 23 23 C 1.35595 * 107.79531 * 359.56791 * 22 4 3 24 24 O 1.35767 * 126.08035 * 180.16079 * 23 22 4 25 25 C 1.42901 * 117.00236 * 2.59879 * 24 23 22 26 26 F 1.39893 * 109.47424 * 298.81893 * 25 24 23 27 27 F 1.39902 * 109.46729 * 58.81706 * 25 24 23 28 28 H 1.09004 * 109.47054 * 85.20929 * 1 2 3 29 29 H 1.09001 * 109.47114 * 205.20293 * 1 2 3 30 30 H 1.09000 * 109.47661 * 325.20569 * 1 2 3 31 31 H 0.96992 * 119.99993 * 359.97438 * 7 5 4 32 32 H 1.08000 * 126.06217 * 359.97438 * 9 8 7 33 33 H 1.07996 * 126.07321 * 180.22754 * 10 9 8 34 34 H 1.09007 * 109.47064 * 4.71791 * 12 11 10 35 35 H 1.09004 * 109.47462 * 244.72082 * 12 11 10 36 36 H 0.97000 * 119.99569 * 0.28184 * 16 15 13 37 37 H 1.08000 * 126.09796 * 179.73977 * 22 4 3 38 38 H 1.08993 * 109.46941 * 178.81189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5433 0.7326 -0.0006 5 6 4.7336 1.6070 -0.0002 6 8 5.8470 1.1183 -0.0013 7 7 4.5857 2.9466 0.0013 8 6 5.7147 3.7760 0.0010 9 6 7.0523 3.3486 -0.0012 10 6 7.8394 4.4482 -0.0057 11 7 7.0357 5.5326 0.0018 12 6 7.4757 6.9299 0.0024 13 6 6.8477 7.6549 -1.1599 14 1 6.1872 7.1274 -1.8321 15 6 7.1171 8.9914 -1.3657 16 7 7.9179 9.6348 -0.5445 17 14 6.3392 9.8898 -2.8069 18 1 6.7803 11.3078 -2.8026 19 1 6.7586 9.2448 -4.0770 20 1 4.8603 9.8312 -2.6868 21 7 5.7073 5.0883 0.0028 22 6 3.5512 -0.6780 -0.0071 23 6 2.2625 -1.0997 -0.0006 24 8 1.8437 -2.3911 -0.0007 25 6 2.8538 -3.4007 0.0494 26 9 3.6759 -3.2943 -1.0775 27 9 3.6235 -3.2332 1.2056 28 1 -0.3633 0.0858 -1.0241 29 1 -0.3633 -0.9298 0.4376 30 1 -0.3634 0.8439 0.5864 31 1 3.6975 3.3365 0.0017 32 1 7.3922 2.3234 -0.0026 33 1 8.9193 4.4573 -0.0118 34 1 8.5613 6.9690 -0.0886 35 1 7.1720 7.4061 0.9347 36 1 8.3221 9.1681 0.2036 37 1 4.4273 -1.3095 -0.0130 38 1 2.3840 -4.3841 0.0650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185606350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:13 Heat of formation + Delta-G solvation = -31.522619 kcal Electronic energy + Delta-G solvation = -28333.688828 eV Core-core repulsion = 23657.639687 eV Total energy + Delta-G solvation = -4676.049141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.27624 -48.35637 -42.85233 -42.27149 -40.57249 -39.30421 -36.52858 -35.61986 -34.57739 -32.75314 -31.14775 -30.93652 -28.83444 -28.00095 -27.22478 -25.50475 -24.52350 -22.74838 -22.55884 -21.88148 -21.05288 -19.92891 -19.26078 -19.08665 -19.00267 -18.33172 -17.77164 -17.48679 -17.29543 -16.90189 -16.48488 -16.12525 -15.83969 -15.64102 -15.45264 -15.21832 -15.18913 -14.99343 -14.75356 -14.54955 -14.22722 -13.96922 -13.86577 -13.75245 -13.50381 -13.47414 -13.23620 -13.13575 -12.62291 -12.33161 -12.12951 -11.95329 -11.78575 -11.33732 -11.02529 -10.69492 -10.51329 -9.90180 -9.88352 -9.27132 -8.78334 -6.55741 -0.11343 0.42149 0.68690 1.04154 1.12065 1.51076 1.57534 1.68734 1.75532 1.79668 2.18483 2.26028 2.48549 2.53359 2.93723 3.01107 3.38183 3.60492 3.62511 3.82706 3.97201 4.10766 4.14153 4.36202 4.37362 4.53405 4.64349 4.65920 4.74176 4.78954 4.80363 4.96861 5.01836 5.54202 5.67459 5.72422 5.89638 5.95262 6.16368 6.25732 6.41035 6.73743 6.89722 7.19444 8.58488 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.002125 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.443119 B =13175.272662 C =13984.506262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.341 5.341 3 N -0.247 5.247 4 C 0.046 3.954 5 C 0.611 3.389 6 O -0.521 6.521 7 N -0.611 5.611 8 C 0.265 3.735 9 C -0.289 4.289 10 C 0.060 3.940 11 N -0.341 5.341 12 C 0.259 3.741 13 C -0.622 4.622 14 H 0.044 0.956 15 C -0.019 4.019 16 N -0.922 5.922 17 Si 1.119 2.881 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.276 1.276 21 N -0.341 5.341 22 C -0.278 4.278 23 C 0.273 3.727 24 O -0.305 6.305 25 C 0.419 3.581 26 F -0.206 7.206 27 F -0.206 7.206 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.426 0.574 32 H 0.173 0.827 33 H 0.207 0.793 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.162 0.838 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.482 -30.489 1.757 34.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.134 5.134 3 N -0.079 5.079 4 C -0.119 4.119 5 C 0.396 3.604 6 O -0.393 6.393 7 N -0.260 5.260 8 C 0.011 3.989 9 C -0.319 4.319 10 C -0.088 4.088 11 N -0.123 5.123 12 C 0.140 3.860 13 C -0.660 4.660 14 H 0.063 0.937 15 C -0.218 4.218 16 N -0.558 5.558 17 Si 0.940 3.060 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.202 1.202 21 N -0.171 5.171 22 C -0.309 4.309 23 C 0.103 3.897 24 O -0.218 6.218 25 C 0.330 3.670 26 F -0.188 7.188 27 F -0.188 7.188 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.263 0.737 32 H 0.190 0.810 33 H 0.224 0.776 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.180 0.820 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -17.500 -27.383 1.032 32.513 hybrid contribution 1.165 -2.333 0.986 2.787 sum -16.335 -29.716 2.018 33.969 Atomic orbital electron populations 1.22535 0.69774 1.07064 1.05928 1.48993 1.08461 0.99850 1.56050 1.77810 1.00236 1.06034 1.23868 1.21201 0.91387 0.93855 1.05503 1.17021 0.87324 0.80179 0.75909 1.90725 1.25170 1.74646 1.48740 1.42280 1.07781 1.04511 1.71389 1.19342 0.88603 0.89252 1.01749 1.21753 0.89705 1.00762 1.19721 1.23220 0.99705 0.85512 1.00345 1.48632 1.02060 1.07490 1.54076 1.19464 0.95681 0.73444 0.97456 1.22285 1.32327 0.98294 1.13116 0.93728 1.27267 0.95376 0.95383 1.03816 1.70946 1.29650 1.39668 1.15565 0.82884 0.75652 0.75300 0.72143 1.19889 1.19643 1.20165 1.77299 1.00694 1.09205 1.29948 1.21163 0.96290 0.93843 1.19562 1.18537 0.88847 0.82169 1.00102 1.86419 1.36838 1.09979 1.88544 1.24683 0.77891 0.93416 0.70964 1.93129 1.75334 1.96585 1.53755 1.93132 1.78039 1.96170 1.51447 0.88324 0.86105 0.87475 0.73660 0.80993 0.77607 0.92484 0.96416 0.92928 0.82013 0.72722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.44 127.77 1.46 2.11 16 2 N -0.34 -6.21 4.03 -480.58 -1.94 -8.15 16 3 N -0.25 -6.16 12.26 -48.44 -0.59 -6.75 16 4 C 0.05 1.29 7.09 42.33 0.30 1.59 16 5 C 0.61 20.54 7.79 86.74 0.68 21.21 16 6 O -0.52 -19.55 14.02 -3.99 -0.06 -19.61 16 7 N -0.61 -21.60 5.44 -310.23 -1.69 -23.29 16 8 C 0.26 11.28 8.11 133.35 1.08 12.36 16 9 C -0.29 -11.66 9.60 22.11 0.21 -11.45 16 10 C 0.06 2.42 11.43 83.52 0.95 3.38 16 11 N -0.34 -16.43 3.67 -351.85 -1.29 -17.72 16 12 C 0.26 13.50 5.57 85.63 0.48 13.98 16 13 C -0.62 -35.96 9.24 25.60 0.24 -35.73 16 14 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 15 C -0.02 -1.06 5.46 84.66 0.46 -0.59 16 16 N -0.92 -54.38 13.65 21.45 0.29 -54.09 16 17 Si 1.12 50.44 29.90 68.60 2.05 52.49 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 N -0.34 -16.63 12.42 -54.48 -0.68 -17.30 16 22 C -0.28 -6.79 8.80 22.35 0.20 -6.60 16 23 C 0.27 5.13 7.46 83.46 0.62 5.75 16 24 O -0.31 -3.41 10.36 -90.94 -0.94 -4.35 16 25 C 0.42 2.89 5.99 113.37 0.68 3.57 16 26 F -0.21 -2.72 16.07 44.97 0.72 -2.00 16 27 F -0.21 -2.69 16.12 44.97 0.73 -1.96 16 28 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.12 0.30 8.04 -2.39 -0.02 0.28 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.43 13.48 8.52 -92.71 -0.79 12.69 16 32 H 0.17 6.60 5.91 -2.91 -0.02 6.59 16 33 H 0.21 6.38 8.06 -2.91 -0.02 6.36 16 34 H 0.06 2.83 7.94 -2.38 -0.02 2.81 16 35 H 0.02 0.98 8.00 -2.38 -0.02 0.96 16 36 H 0.26 15.21 7.22 -92.71 -0.67 14.54 16 37 H 0.16 4.00 6.61 -2.91 -0.02 3.98 16 38 H 0.26 -1.69 8.14 -2.39 -0.02 -1.71 16 Total: -1.00 -80.61 349.81 4.43 -76.18 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.46 Total: 16.97 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 7.36 Total: 9.58 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -5.90 Total: -127.30 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -1.00 Total: -23.96 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.45 Total: -3.96 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -80.61 4.43 -76.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185606350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.660 kcal (2) G-P(sol) polarization free energy of solvation -80.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds