Wall clock time and date at job start Sat Apr 11 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42906 * 109.46752 * 239.99582 * 2 1 3 5 5 C 1.42899 * 113.99771 * 90.00267 * 4 2 1 6 6 C 1.50695 * 109.47139 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99853 * 269.72723 * 6 5 4 8 8 C 1.38234 * 120.00199 * 179.76698 * 7 6 5 9 9 C 1.38245 * 119.99646 * 0.50400 * 8 7 6 10 10 C 1.38232 * 119.99796 * 359.75024 * 9 8 7 11 11 C 1.38231 * 120.00183 * 89.99808 * 6 5 4 12 12 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 13 13 O 1.21279 * 120.00449 * 114.99935 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99517 * 12 2 1 15 15 S 1.65605 * 120.00178 * 179.97438 * 14 12 2 16 16 O 1.42100 * 104.27909 * 181.07194 * 15 14 12 17 17 O 1.42108 * 104.27608 * 308.93218 * 15 14 12 18 18 C 1.81404 * 104.44704 * 65.00013 * 15 14 12 19 19 C 1.52998 * 109.47193 * 180.02562 * 18 15 14 20 20 C 1.50693 * 109.47175 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00441 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00156 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99556 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47320 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47437 * 120.00218 * 24 22 20 27 27 H 1.48503 * 109.46569 * 240.00181 * 24 22 20 28 28 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99659 * 5 4 2 32 32 H 1.08999 * 109.47317 * 59.99592 * 5 4 2 33 33 H 1.08004 * 120.00408 * 359.97438 * 7 6 5 34 34 H 1.08000 * 120.00309 * 180.22790 * 8 7 6 35 35 H 1.08003 * 119.99560 * 179.72901 * 9 8 7 36 36 H 1.08007 * 119.99681 * 179.97438 * 10 9 8 37 37 H 1.08002 * 120.00210 * 0.02562 * 11 6 5 38 38 H 0.97003 * 120.00627 * 0.02562 * 14 12 2 39 39 H 1.08999 * 109.46934 * 300.00473 * 18 15 14 40 40 H 1.09000 * 109.46715 * 60.00279 * 18 15 14 41 41 H 1.09002 * 109.46963 * 300.00328 * 19 18 15 42 42 H 1.08998 * 109.47445 * 59.99514 * 19 18 15 43 43 H 0.97005 * 119.99979 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7013 -0.6284 -3.4610 7 6 4.0599 -0.7958 -3.6536 8 6 4.5197 -1.5439 -4.7212 9 6 3.6210 -2.1159 -5.6023 10 6 2.2626 -1.9441 -5.4127 11 6 1.8027 -1.2004 -4.3420 12 6 2.0324 -0.7104 1.2304 13 8 2.6530 -1.7467 1.1215 14 7 1.7920 -0.1941 2.4519 15 16 2.3434 -0.9750 3.8042 16 8 1.8898 -0.1697 4.8835 17 8 1.8891 -2.3122 3.6464 18 6 4.1506 -0.8964 3.6669 19 6 4.7844 -1.5934 4.8724 20 6 6.2856 -1.5276 4.7587 21 1 6.7421 -1.0373 3.9116 22 6 7.0765 -2.0924 5.7368 23 7 6.5207 -2.6881 6.7691 24 14 8.9374 -2.0101 5.5961 25 1 9.3085 -1.2911 4.3510 26 1 9.4911 -1.2876 6.7693 27 1 9.4920 -3.3871 5.5559 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.2538 0.6545 -2.5589 32 1 2.9319 0.9512 -2.0451 33 1 4.7622 -0.3450 -2.9680 34 1 5.5810 -1.6778 -4.8696 35 1 3.9804 -2.6967 -6.4390 36 1 1.5605 -2.3906 -6.1013 37 1 0.7414 -1.0656 -4.1944 38 1 1.2954 0.6345 2.5392 39 1 4.4674 -1.3954 2.7511 40 1 4.4679 0.1460 3.6412 41 1 4.4675 -1.0948 5.7885 42 1 4.4669 -2.6358 4.8979 43 1 7.0771 -3.0859 7.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185666249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:16 Heat of formation + Delta-G solvation = -135.496611 kcal Electronic energy + Delta-G solvation = -26942.226595 eV Core-core repulsion = 22886.756782 eV Total energy + Delta-G solvation = -4055.469813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43905 -39.53909 -37.81346 -36.69742 -35.62684 -34.59813 -33.89359 -32.76355 -31.18638 -31.16567 -30.99404 -26.56978 -25.64119 -24.92107 -22.85366 -21.80006 -21.64521 -21.38341 -19.45888 -18.21834 -17.75751 -17.07513 -16.89131 -16.50282 -16.06937 -15.82270 -15.63827 -15.14033 -15.10106 -14.79870 -14.53488 -14.32342 -13.69264 -13.66545 -13.44857 -13.28973 -12.91911 -12.75556 -12.54373 -12.45558 -12.37119 -11.83936 -11.80281 -11.72855 -11.61847 -11.31710 -11.23202 -11.08950 -10.99832 -10.86986 -10.45625 -10.36253 -10.32677 -9.87058 -9.69233 -9.17334 -9.17044 -9.11716 -8.49565 -6.11651 -4.16909 0.46579 0.97259 1.15033 2.03080 2.55642 3.21735 3.26943 3.34031 3.37842 3.71667 3.98591 4.10505 4.38133 4.40444 4.46102 4.55104 4.61656 4.65124 4.73160 4.84691 4.88640 4.91480 4.96652 5.18423 5.23392 5.23845 5.29210 5.37020 5.58764 5.67890 5.72205 5.72934 5.76915 6.16892 6.24469 6.30172 6.43820 6.51063 6.70346 6.75524 7.28919 7.35655 7.46617 7.81747 8.17390 8.86268 9.47637 10.99558 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.002822 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.323445 B = 9920.428554 C =12098.850487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 H 0.097 0.903 4 O -0.348 6.348 5 C 0.100 3.900 6 C -0.092 4.092 7 C -0.094 4.094 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.126 4.126 11 C -0.097 4.097 12 C 0.531 3.469 13 O -0.463 6.463 14 N -1.057 6.057 15 S 2.566 3.434 16 O -0.953 6.953 17 O -0.936 6.936 18 C -0.575 4.575 19 C 0.029 3.971 20 C -0.518 4.518 21 H 0.063 0.937 22 C 0.057 3.943 23 N -0.890 5.890 24 Si 0.901 3.099 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.427 0.573 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.778 10.206 -23.295 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.007 3.993 3 H 0.115 0.885 4 O -0.267 6.267 5 C 0.023 3.977 6 C -0.092 4.092 7 C -0.112 4.112 8 C -0.141 4.141 9 C -0.132 4.132 10 C -0.144 4.144 11 C -0.115 4.115 12 C 0.315 3.685 13 O -0.331 6.331 14 N -0.820 5.820 15 S 2.666 3.334 16 O -0.944 6.944 17 O -0.926 6.926 18 C -0.710 4.710 19 C -0.010 4.010 20 C -0.558 4.558 21 H 0.081 0.919 22 C -0.145 4.145 23 N -0.529 5.529 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.262 0.738 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.856 8.738 -22.615 26.987 hybrid contribution 1.175 0.914 -0.253 1.510 sum -10.681 9.652 -22.868 27.022 Atomic orbital electron populations 1.22269 0.92905 1.04533 1.03490 1.21983 0.95639 0.96501 0.85216 0.88522 1.88177 1.86425 1.33692 1.18361 1.21467 0.99850 0.91742 0.84599 1.19518 0.93743 1.00327 0.95598 1.21131 0.94932 0.97911 0.97266 1.21191 0.99967 0.97832 0.95104 1.21226 0.93464 0.99205 0.99279 1.21144 0.95788 0.99280 0.98155 1.21050 0.99411 0.96638 0.94449 1.20340 0.78691 0.85023 0.84396 1.90944 1.35737 1.20605 1.85822 1.55459 1.65207 1.38827 1.22487 1.06750 0.79981 0.74310 0.72393 1.93591 1.80946 1.69838 1.49995 1.93605 1.79781 1.35302 1.83931 1.30340 1.18340 1.10502 1.11810 1.18997 0.97479 0.95837 0.88684 1.21014 0.89672 1.37338 1.07745 0.91912 1.25070 0.99357 0.94948 0.95135 1.69965 1.35676 1.36614 1.10598 0.86387 0.84723 0.77947 0.78083 1.19619 1.20808 1.20747 0.90554 0.90707 0.90521 0.91998 0.91939 0.85698 0.85758 0.85998 0.85919 0.85937 0.73774 0.85044 0.86026 0.94736 0.94540 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 9.48 37.16 0.35 -0.88 16 2 C 0.07 0.66 3.13 -27.88 -0.09 0.57 16 3 H 0.10 0.56 7.79 -51.93 -0.40 0.15 16 4 O -0.35 -4.10 9.51 -55.09 -0.52 -4.62 16 5 C 0.10 0.83 5.87 36.00 0.21 1.04 16 6 C -0.09 -0.89 5.51 -104.63 -0.58 -1.47 16 7 C -0.09 -0.93 9.70 -39.58 -0.38 -1.31 16 8 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 9 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 10 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 11 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 12 C 0.53 7.34 6.92 -10.99 -0.08 7.26 16 13 O -0.46 -8.72 14.61 -22.93 -0.34 -9.05 16 14 N -1.06 -13.16 5.57 31.22 0.17 -12.99 16 15 S 2.57 46.55 5.11 -107.50 -0.55 46.00 16 16 O -0.95 -18.58 18.08 -57.54 -1.04 -19.62 16 17 O -0.94 -20.73 17.04 -64.79 -1.10 -21.84 16 18 C -0.58 -11.50 5.82 37.16 0.22 -11.28 16 19 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 20 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 21 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 24 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 28 H 0.08 0.39 7.92 -51.93 -0.41 -0.02 16 29 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.36 7.81 -51.93 -0.41 -0.04 16 32 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 33 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.43 3.29 8.57 -34.47 -0.30 2.99 16 39 H 0.13 2.62 7.19 -51.92 -0.37 2.25 16 40 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -39.24 383.97 -10.41 -49.65 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.06 Total: 0.50 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.47 Total: -24.29 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.91 Total: -39.00 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -3.00 Total: -55.13 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 46.55 SS G_CDS: -0.55 Total: 46.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.24 -10.41 -49.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185666249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.843 kcal (2) G-P(sol) polarization free energy of solvation -39.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds