Wall clock time and date at job start Sat Apr 11 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42906 * 109.46752 * 239.99582 * 2 1 3 5 5 C 1.42899 * 113.99771 * 90.00267 * 4 2 1 6 6 C 1.50695 * 109.47139 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99853 * 269.72723 * 6 5 4 8 8 C 1.38234 * 120.00199 * 179.76698 * 7 6 5 9 9 C 1.38245 * 119.99646 * 0.50400 * 8 7 6 10 10 C 1.38232 * 119.99796 * 359.75024 * 9 8 7 11 11 C 1.38231 * 120.00183 * 89.99808 * 6 5 4 12 12 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 13 13 O 1.21279 * 120.00449 * 114.99935 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99517 * 12 2 1 15 15 S 1.65605 * 120.00178 * 179.97438 * 14 12 2 16 16 O 1.42100 * 104.27909 * 181.07194 * 15 14 12 17 17 O 1.42108 * 104.27608 * 308.93218 * 15 14 12 18 18 C 1.81404 * 104.44704 * 65.00013 * 15 14 12 19 19 C 1.52998 * 109.47193 * 180.02562 * 18 15 14 20 20 C 1.50693 * 109.47175 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00441 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00156 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99556 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47320 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47437 * 120.00218 * 24 22 20 27 27 H 1.48503 * 109.46569 * 240.00181 * 24 22 20 28 28 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99659 * 5 4 2 32 32 H 1.08999 * 109.47317 * 59.99592 * 5 4 2 33 33 H 1.08004 * 120.00408 * 359.97438 * 7 6 5 34 34 H 1.08000 * 120.00309 * 180.22790 * 8 7 6 35 35 H 1.08003 * 119.99560 * 179.72901 * 9 8 7 36 36 H 1.08007 * 119.99681 * 179.97438 * 10 9 8 37 37 H 1.08002 * 120.00210 * 0.02562 * 11 6 5 38 38 H 0.97003 * 120.00627 * 0.02562 * 14 12 2 39 39 H 1.08999 * 109.46934 * 300.00473 * 18 15 14 40 40 H 1.09000 * 109.46715 * 60.00279 * 18 15 14 41 41 H 1.09002 * 109.46963 * 300.00328 * 19 18 15 42 42 H 1.08998 * 109.47445 * 59.99514 * 19 18 15 43 43 H 0.97005 * 119.99979 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7013 -0.6284 -3.4610 7 6 4.0599 -0.7958 -3.6536 8 6 4.5197 -1.5439 -4.7212 9 6 3.6210 -2.1159 -5.6023 10 6 2.2626 -1.9441 -5.4127 11 6 1.8027 -1.2004 -4.3420 12 6 2.0324 -0.7104 1.2304 13 8 2.6530 -1.7467 1.1215 14 7 1.7920 -0.1941 2.4519 15 16 2.3434 -0.9750 3.8042 16 8 1.8898 -0.1697 4.8835 17 8 1.8891 -2.3122 3.6464 18 6 4.1506 -0.8964 3.6669 19 6 4.7844 -1.5934 4.8724 20 6 6.2856 -1.5276 4.7587 21 1 6.7421 -1.0373 3.9116 22 6 7.0765 -2.0924 5.7368 23 7 6.5207 -2.6881 6.7691 24 14 8.9374 -2.0101 5.5961 25 1 9.3085 -1.2911 4.3510 26 1 9.4911 -1.2876 6.7693 27 1 9.4920 -3.3871 5.5559 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.2538 0.6545 -2.5589 32 1 2.9319 0.9512 -2.0451 33 1 4.7622 -0.3450 -2.9680 34 1 5.5810 -1.6778 -4.8696 35 1 3.9804 -2.6967 -6.4390 36 1 1.5605 -2.3906 -6.1013 37 1 0.7414 -1.0656 -4.1944 38 1 1.2954 0.6345 2.5392 39 1 4.4674 -1.3954 2.7511 40 1 4.4679 0.1460 3.6412 41 1 4.4675 -1.0948 5.7885 42 1 4.4669 -2.6358 4.8979 43 1 7.0771 -3.0859 7.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185666249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:15 Heat of formation + Delta-G solvation = -164.084611 kcal Electronic energy + Delta-G solvation = -26943.466263 eV Core-core repulsion = 22886.756782 eV Total energy + Delta-G solvation = -4056.709481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48897 -40.21363 -38.64350 -38.24565 -37.24908 -35.99367 -35.75213 -33.41622 -33.19188 -31.78596 -31.67057 -27.67304 -27.17900 -25.76588 -23.68863 -23.47932 -22.45581 -22.26210 -20.81939 -19.47961 -19.01676 -18.46952 -17.80390 -17.56781 -17.37420 -16.78205 -16.73466 -16.53929 -16.36705 -16.13364 -15.70376 -15.28634 -15.08190 -14.51353 -14.39112 -14.26903 -13.99403 -13.81947 -13.72398 -13.56576 -13.39018 -13.32143 -13.27278 -13.00631 -12.98048 -12.85381 -12.50538 -12.34894 -12.24816 -12.04619 -11.91797 -11.82798 -11.75807 -11.32408 -11.08243 -10.67882 -10.64293 -9.81662 -9.76170 -8.28946 -6.42940 -1.03919 0.32354 0.50568 0.93309 1.33474 1.38976 1.40555 1.53740 2.35139 2.43379 2.57077 2.94129 3.04591 3.14550 3.25962 3.76363 3.85486 3.87952 3.96724 4.00179 4.02805 4.08430 4.16122 4.29038 4.37876 4.41890 4.64053 4.67207 4.71519 4.77218 4.81335 5.08671 5.15732 5.20654 5.21985 5.23283 5.54731 5.59404 5.61580 5.65258 5.66152 6.02192 6.05524 6.11580 6.44214 6.69807 7.27026 8.83796 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.002822 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.323445 B = 9920.428554 C =12098.850487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 H 0.145 0.855 4 O -0.384 6.384 5 C 0.096 3.904 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.138 4.138 9 C -0.123 4.123 10 C -0.134 4.134 11 C -0.108 4.108 12 C 0.528 3.472 13 O -0.519 6.519 14 N -1.031 6.031 15 S 2.601 3.399 16 O -0.966 6.966 17 O -0.980 6.980 18 C -0.579 4.579 19 C 0.022 3.978 20 C -0.540 4.540 21 H 0.073 0.927 22 C -0.003 4.003 23 N -0.933 5.933 24 Si 0.976 3.024 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.279 1.279 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.452 0.548 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.018 0.982 42 H 0.003 0.997 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 12.556 -25.278 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 H 0.162 0.838 4 O -0.303 6.303 5 C 0.021 3.979 6 C -0.111 4.111 7 C -0.135 4.135 8 C -0.156 4.156 9 C -0.141 4.141 10 C -0.151 4.151 11 C -0.126 4.126 12 C 0.315 3.685 13 O -0.391 6.391 14 N -0.800 5.800 15 S 2.700 3.300 16 O -0.956 6.956 17 O -0.970 6.970 18 C -0.712 4.712 19 C -0.017 4.017 20 C -0.579 4.579 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.572 5.572 24 Si 0.799 3.201 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.205 1.205 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.293 0.707 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.036 0.964 42 H 0.021 0.979 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.273 11.137 -24.591 29.654 hybrid contribution 1.223 0.199 0.280 1.270 sum -11.050 11.335 -24.311 29.011 Atomic orbital electron populations 1.22347 0.90757 1.03865 1.06133 1.22214 0.96964 0.97433 0.82263 0.83816 1.88135 1.86879 1.35730 1.19575 1.21672 1.01736 0.91324 0.83156 1.19830 0.93834 1.00917 0.96470 1.21345 0.95517 0.98773 0.97890 1.21457 1.00915 0.97961 0.95255 1.21543 0.93658 0.99169 0.99710 1.21497 0.96259 0.98983 0.98395 1.21358 1.00291 0.96522 0.94460 1.21421 0.77213 0.84355 0.85546 1.90928 1.38468 1.23331 1.86364 1.54819 1.64816 1.39610 1.20788 1.05352 0.78505 0.73376 0.72778 1.93569 1.80598 1.69850 1.51574 1.93553 1.80014 1.38372 1.85021 1.30243 1.20545 1.11677 1.08772 1.18830 0.97579 0.94503 0.90750 1.21502 0.90994 1.37311 1.08100 0.90847 1.26126 1.05059 0.94360 0.94651 1.70101 1.37857 1.37668 1.11609 0.85235 0.77891 0.78133 0.78813 1.18076 1.19841 1.20478 0.88254 0.87774 0.92869 0.89087 0.90529 0.85697 0.84675 0.84071 0.83834 0.84261 0.70671 0.85174 0.82779 0.96418 0.97855 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.48 71.98 0.68 -1.15 16 2 C 0.07 1.17 3.13 29.85 0.09 1.27 16 3 H 0.14 0.93 7.79 -2.39 -0.02 0.91 16 4 O -0.38 -8.32 9.51 -129.99 -1.24 -9.55 16 5 C 0.10 1.37 5.87 71.23 0.42 1.79 16 6 C -0.11 -2.02 5.51 -19.87 -0.11 -2.13 16 7 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 8 C -0.14 -2.43 10.05 22.27 0.22 -2.21 16 9 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 10 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 11 C -0.11 -1.75 9.70 22.27 0.22 -1.54 16 12 C 0.53 13.81 6.92 87.66 0.61 14.42 16 13 O -0.52 -19.78 14.61 24.22 0.35 -19.42 16 14 N -1.03 -23.69 5.57 -173.54 -0.97 -24.66 16 15 S 2.60 94.28 5.11 -56.49 -0.29 93.99 16 16 O -0.97 -37.01 18.08 -127.65 -2.31 -39.32 16 17 O -0.98 -44.65 17.04 -120.72 -2.06 -46.70 16 18 C -0.58 -23.36 5.82 71.98 0.42 -22.94 16 19 C 0.02 1.21 4.98 29.85 0.15 1.36 16 20 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 21 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 22 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 23 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 24 Si 0.98 44.24 29.54 68.60 2.03 46.26 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 H 0.10 0.58 7.92 -2.39 -0.02 0.56 16 29 H 0.10 0.53 7.87 -2.39 -0.02 0.51 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.72 7.81 -2.39 -0.02 0.70 16 32 H 0.08 0.83 8.03 -2.39 -0.02 0.81 16 33 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.45 5.41 8.57 -96.74 -0.83 4.58 16 39 H 0.13 5.30 7.19 -2.39 -0.02 5.28 16 40 H 0.15 5.05 8.14 -2.39 -0.02 5.03 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.27 15.40 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -89.53 383.97 0.06 -89.47 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.19 Total: 14.34 kcal Atomic # 6 Polarization: -51.13 SS G_CDS: 4.06 Total: -47.08 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -0.68 Total: -81.98 kcal Atomic # 8 Polarization: -109.75 SS G_CDS: -5.25 Total: -115.00 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 94.28 SS G_CDS: -0.29 Total: 93.99 kcal Total: -89.53 0.06 -89.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185666249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.616 kcal (2) G-P(sol) polarization free energy of solvation -89.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds