Wall clock time and date at job start Sat Apr 11 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47095 * 2 1 4 4 O 1.42902 * 109.46768 * 119.99964 * 2 1 3 5 5 C 1.35899 * 117.00424 * 84.86155 * 4 2 1 6 6 C 1.38733 * 120.05022 * 354.61769 * 5 4 2 7 7 C 1.38151 * 119.94429 * 179.97438 * 6 5 4 8 8 C 1.38269 * 120.05039 * 0.02562 * 7 6 5 9 9 S 1.76202 * 119.93838 * 179.97438 * 8 7 6 10 10 O 1.42094 * 106.40350 * 336.46031 * 9 8 7 11 11 O 1.42101 * 106.39878 * 203.53731 * 9 8 7 12 12 N 1.65606 * 107.21790 * 90.00191 * 9 8 7 13 13 C 1.47576 * 134.49396 * 89.99709 * 12 9 8 14 14 C 1.53941 * 86.11765 * 155.35655 * 13 12 9 15 15 O 1.42897 * 113.74412 * 269.15437 * 14 13 12 16 16 C 1.50703 * 113.74116 * 137.94791 * 14 13 12 17 17 H 1.08003 * 120.00046 * 1.93056 * 16 14 13 18 18 C 1.37875 * 120.00330 * 181.92577 * 16 14 13 19 19 N 1.31506 * 120.00236 * 180.02562 * 18 16 14 20 20 Si 1.86797 * 119.99572 * 0.02562 * 18 16 14 21 21 H 1.48503 * 109.47335 * 269.99633 * 20 18 16 22 22 H 1.48498 * 109.47527 * 29.99698 * 20 18 16 23 23 H 1.48500 * 109.47327 * 150.00361 * 20 18 16 24 24 C 1.47813 * 134.45501 * 269.86468 * 12 9 8 25 25 C 1.38263 * 120.11427 * 0.27352 * 8 7 6 26 26 C 1.38148 * 120.05527 * 359.45036 * 25 8 7 27 27 H 1.09000 * 109.47421 * 300.00221 * 1 2 3 28 28 H 1.08994 * 109.47045 * 60.00082 * 1 2 3 29 29 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46949 * 239.99542 * 2 1 3 31 31 H 1.08995 * 109.46698 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47107 * 299.99880 * 3 2 1 33 33 H 1.09000 * 109.46873 * 60.00083 * 3 2 1 34 34 H 1.08005 * 120.03170 * 359.95391 * 6 5 4 35 35 H 1.08000 * 119.97369 * 180.02562 * 7 6 5 36 36 H 1.09002 * 113.77000 * 41.05660 * 13 12 9 37 37 H 1.08999 * 113.76923 * 269.66444 * 13 12 9 38 38 H 0.96702 * 113.99709 * 178.07775 * 15 14 13 39 39 H 0.96999 * 120.00403 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.76749 * 90.37809 * 24 12 9 41 41 H 1.09002 * 113.83214 * 318.91766 * 24 12 9 42 42 H 1.08004 * 119.97200 * 179.70770 * 25 8 7 43 43 H 1.07996 * 120.02806 * 180.27121 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1097 -2.0270 1.0990 6 6 1.6559 -2.7030 -0.0243 7 6 1.7626 -4.0787 -0.0912 8 6 2.3206 -4.7819 0.9605 9 16 2.4546 -6.5366 0.8724 10 8 1.4660 -6.9686 -0.0524 11 8 2.5205 -7.0018 2.2135 12 7 3.9210 -6.8823 0.1849 13 6 5.2809 -7.1122 0.7099 14 6 5.5292 -7.9172 -0.5786 15 8 5.2252 -9.3080 -0.4557 16 6 6.8773 -7.6632 -1.2024 17 1 7.5759 -6.9925 -0.7243 18 6 7.2191 -8.2873 -2.3834 19 7 8.3957 -8.0661 -2.9274 20 14 6.0107 -9.4469 -3.2106 21 1 6.2262 -10.8275 -2.7078 22 1 4.6228 -9.0186 -2.9016 23 1 6.2225 -9.4168 -4.6801 24 6 4.3921 -7.0869 -1.2011 25 6 2.7679 -4.1111 2.0837 26 6 2.6687 -2.7349 2.1530 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.2193 -2.1542 -0.8458 35 1 1.4099 -4.6054 -0.9656 36 1 5.3054 -7.7163 1.6169 37 1 5.8820 -6.2060 0.7846 38 1 5.3519 -9.8118 -1.2714 39 1 8.6361 -8.5048 -3.7585 40 1 4.7315 -6.1732 -1.6891 41 1 3.7081 -7.6707 -1.8171 42 1 3.1990 -4.6630 2.9058 43 1 3.0222 -2.2110 3.0287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189057541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:17 Heat of formation + Delta-G solvation = -108.349550 kcal Electronic energy + Delta-G solvation = -27887.807428 eV Core-core repulsion = 23833.514800 eV Total energy + Delta-G solvation = -4054.292628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48002 -40.53605 -38.86481 -38.34800 -36.98870 -36.18863 -34.49637 -34.34013 -32.19682 -31.14876 -29.88151 -28.22036 -27.22735 -26.39842 -24.73931 -24.08155 -22.01769 -21.58146 -20.13710 -19.58068 -19.36829 -18.71880 -18.20431 -18.07621 -17.42544 -16.67850 -16.52241 -16.01120 -15.77906 -15.72745 -15.38207 -15.14139 -14.94012 -14.77816 -14.48379 -14.42947 -14.23899 -13.92221 -13.80891 -13.44273 -13.37831 -13.28503 -13.25516 -13.20461 -12.95788 -12.75193 -12.63785 -12.35185 -12.30878 -12.03737 -11.93781 -11.88578 -11.69754 -11.09462 -10.93001 -10.51722 -10.24831 -10.00401 -9.65686 -8.38834 -6.48934 -0.72459 -0.21724 0.14443 1.27843 1.33341 1.41450 1.83333 1.98832 2.21188 2.39804 2.76276 2.83957 3.06477 3.30519 3.55100 3.67794 3.78670 3.90560 3.98767 4.06797 4.09574 4.11004 4.18635 4.34089 4.55174 4.62258 4.67107 4.68997 4.73947 4.79084 4.79949 4.83173 4.91894 4.94088 4.99491 5.01430 5.08425 5.19630 5.24243 5.30529 5.50890 5.67038 6.09822 6.22312 6.59170 6.76537 7.18963 8.76225 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003195 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.900228 B = 8761.839186 C = 9608.518673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 C -0.146 4.146 4 O -0.313 6.313 5 C 0.183 3.817 6 C -0.230 4.230 7 C 0.010 3.990 8 C -0.722 4.722 9 S 2.718 3.282 10 O -0.986 6.986 11 O -0.983 6.983 12 N -1.031 6.031 13 C 0.150 3.850 14 C 0.182 3.818 15 O -0.562 6.562 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.031 3.969 19 N -0.924 5.924 20 Si 0.905 3.095 21 H -0.257 1.257 22 H -0.233 1.233 23 H -0.283 1.283 24 C 0.094 3.906 25 C 0.011 3.989 26 C -0.179 4.179 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.163 0.837 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.355 0.645 39 H 0.272 0.728 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.154 0.846 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.568 17.475 3.920 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 C -0.203 4.203 4 O -0.226 6.226 5 C 0.135 3.865 6 C -0.249 4.249 7 C -0.009 4.009 8 C -0.812 4.812 9 S 2.815 3.185 10 O -0.977 6.977 11 O -0.974 6.974 12 N -0.870 5.870 13 C 0.025 3.975 14 C 0.139 3.861 15 O -0.374 6.374 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.170 4.170 19 N -0.562 5.562 20 Si 0.730 3.270 21 H -0.183 1.183 22 H -0.156 1.156 23 H -0.209 1.209 24 C -0.031 4.031 25 C -0.008 4.008 26 C -0.198 4.198 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.180 0.820 35 H 0.165 0.835 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.207 0.793 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.172 0.828 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.391 17.211 4.920 23.607 hybrid contribution 0.168 -0.183 -1.353 1.376 sum -15.223 17.028 3.567 23.117 Atomic orbital electron populations 1.22407 0.93774 1.03119 1.04417 1.22903 0.95451 0.94584 0.86474 1.21893 1.02023 0.92123 1.04300 1.86166 1.80108 1.15527 1.40838 1.19410 0.90184 0.83266 0.93610 1.21622 1.08216 0.94877 1.00166 1.20912 0.89866 0.94362 0.95803 1.30708 1.19614 1.26330 1.04558 1.00756 0.71386 0.74248 0.72100 1.93492 1.57640 1.81616 1.64985 1.93501 1.86488 1.80640 1.36750 1.60063 1.22788 1.85480 1.18691 1.22941 0.78468 0.98739 0.97362 1.20759 0.91437 0.79075 0.94837 1.86448 1.90852 1.21455 1.38605 1.21438 1.00037 1.28526 1.07489 0.91839 1.25722 0.96516 0.97440 0.97354 1.69981 1.21940 1.44028 1.20251 0.86545 0.81372 0.80557 0.78530 1.18261 1.15640 1.20919 1.24086 0.95439 1.00860 0.82744 1.20926 0.90806 0.94156 0.94950 1.20786 1.05448 0.93306 1.00249 0.91429 0.88585 0.92505 0.89847 0.91982 0.88142 0.91339 0.81965 0.83471 0.89669 0.87032 0.79315 0.91867 0.87657 0.90684 0.82801 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.17 71.98 0.66 -1.23 16 2 C 0.06 0.79 2.85 30.60 0.09 0.87 16 3 C -0.15 -1.37 9.56 71.98 0.69 -0.68 16 4 O -0.31 -5.98 9.80 -92.42 -0.91 -6.88 16 5 C 0.18 3.98 6.60 22.51 0.15 4.12 16 6 C -0.23 -4.85 8.24 22.37 0.18 -4.66 16 7 C 0.01 0.25 9.52 22.26 0.21 0.47 16 8 C -0.72 -20.64 5.98 22.28 0.13 -20.50 16 9 S 2.72 94.47 6.24 -56.49 -0.35 94.11 16 10 O -0.99 -38.29 17.25 -128.00 -2.21 -40.50 16 11 O -0.98 -37.78 17.24 -128.00 -2.21 -39.99 16 12 N -1.03 -37.78 4.12 -532.76 -2.20 -39.98 16 13 C 0.15 5.63 8.36 86.49 0.72 6.35 16 14 C 0.18 8.03 1.06 -10.88 -0.01 8.02 16 15 O -0.56 -25.87 13.35 -148.98 -1.99 -27.86 16 16 C -0.54 -27.40 9.19 25.60 0.24 -27.17 16 17 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 18 C 0.03 1.61 5.47 84.66 0.46 2.07 16 19 N -0.92 -52.30 13.96 21.45 0.30 -52.00 16 20 Si 0.90 38.46 24.31 68.60 1.67 40.13 16 21 H -0.26 -10.49 7.05 99.48 0.70 -9.79 16 22 H -0.23 -9.09 5.16 99.48 0.51 -8.57 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.09 3.66 7.46 86.44 0.64 4.31 16 25 C 0.01 0.28 9.52 22.25 0.21 0.49 16 26 C -0.18 -3.99 9.99 22.37 0.22 -3.77 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.71 6.90 -2.39 -0.02 0.69 16 30 H 0.08 0.99 6.31 -2.39 -0.02 0.97 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.16 2.47 5.43 -2.91 -0.02 2.46 16 35 H 0.15 3.46 7.61 -2.91 -0.02 3.44 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.11 3.71 8.09 -2.39 -0.02 3.69 16 38 H 0.35 15.44 3.57 -74.06 -0.26 15.17 16 39 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.11 3.75 8.09 -2.39 -0.02 3.73 16 41 H 0.07 2.88 6.83 -2.39 -0.02 2.86 16 42 H 0.15 3.56 7.61 -2.91 -0.02 3.54 16 43 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -68.57 362.25 -2.71 -71.28 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.58 Total: 33.00 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 4.60 Total: -31.31 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.90 Total: -91.98 kcal Atomic # 8 Polarization: -107.93 SS G_CDS: -7.31 Total: -115.24 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.67 Total: 40.13 kcal Atomic # 16 Polarization: 94.47 SS G_CDS: -0.35 Total: 94.11 kcal Total: -68.57 -2.71 -71.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189057541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.071 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds