Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45200 * 109.47299 * 2 1 4 4 C 1.34709 * 117.00248 * 179.97438 * 3 2 1 5 5 O 1.21473 * 119.99981 * 0.02562 * 4 3 2 6 6 C 1.47722 * 119.99968 * 179.97438 * 4 3 2 7 7 C 1.39651 * 120.15190 * 0.02562 * 6 4 3 8 8 C 1.37914 * 119.84937 * 180.23078 * 7 6 4 9 9 C 1.38393 * 120.15243 * 359.51154 * 8 7 6 10 10 C 1.50700 * 119.85272 * 180.21181 * 9 8 7 11 11 C 1.38348 * 120.30078 * 0.46728 * 9 8 7 12 12 S 1.76198 * 119.92560 * 179.76825 * 11 9 8 13 13 O 1.42107 * 106.40123 * 178.54575 * 12 11 9 14 14 O 1.42095 * 106.40181 * 311.46237 * 12 11 9 15 15 N 1.65601 * 107.21908 * 65.00829 * 12 11 9 16 16 C 1.46491 * 120.00298 * 64.54495 * 15 12 11 17 17 H 1.08996 * 109.47427 * 335.95024 * 16 15 12 18 18 C 1.52998 * 109.47008 * 95.94920 * 16 15 12 19 19 C 1.50708 * 109.47264 * 215.94723 * 16 15 12 20 20 H 1.07998 * 119.99883 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99887 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99987 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99518 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47246 * 90.00483 * 23 21 19 25 25 H 1.48507 * 109.46649 * 209.99817 * 23 21 19 26 26 H 1.48496 * 109.47175 * 329.99811 * 23 21 19 27 27 C 1.37971 * 120.15120 * 359.78950 * 11 9 8 28 28 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47028 * 299.99560 * 1 2 3 30 30 H 1.08997 * 109.47431 * 59.99619 * 1 2 3 31 31 H 1.09006 * 109.46925 * 239.99973 * 2 1 3 32 32 H 1.08997 * 109.47431 * 120.00381 * 2 1 3 33 33 H 1.08001 * 120.07065 * 359.94850 * 7 6 4 34 34 H 1.07998 * 119.92527 * 179.72748 * 8 7 6 35 35 H 1.08994 * 109.47044 * 264.77885 * 10 9 8 36 36 H 1.09002 * 109.46811 * 24.77808 * 10 9 8 37 37 H 1.09005 * 109.46994 * 144.77672 * 10 9 8 38 38 H 0.97006 * 119.99214 * 244.55334 * 15 12 11 39 39 H 1.09003 * 109.47441 * 60.00197 * 18 16 15 40 40 H 1.09002 * 109.46984 * 179.97438 * 18 16 15 41 41 H 1.08995 * 109.47487 * 300.00246 * 18 16 15 42 42 H 0.97003 * 119.99488 * 179.97438 * 22 21 19 43 43 H 1.07992 * 120.07899 * 180.02562 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9141 2.9105 0.0000 7 6 3.0663 4.0203 -0.0005 8 6 3.6001 5.2919 -0.0058 9 6 4.9725 5.4697 -0.0005 10 6 5.5486 6.8623 -0.0015 11 6 5.8182 4.3748 0.0006 12 16 7.5641 4.6126 0.0013 13 8 8.1456 3.3164 0.0368 14 8 7.8403 5.5605 -1.0206 15 7 7.9590 5.3417 1.4347 16 6 7.7482 4.6331 2.6994 17 1 6.9733 3.8780 2.5681 18 6 9.0518 3.9569 3.1285 19 6 7.3188 5.6145 3.7596 20 1 7.2130 6.6612 3.5155 21 6 7.0599 5.1757 5.0408 22 7 7.1882 3.9010 5.3379 23 14 6.5270 6.3920 6.3546 24 1 5.0459 6.4992 6.3585 25 1 6.9926 5.9206 7.6837 26 1 7.1189 7.7230 6.0663 27 6 5.2977 3.0970 0.0006 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9950 3.8829 -0.0014 34 1 2.9456 6.1509 -0.0107 35 1 5.7782 7.1597 -1.0246 36 1 4.8234 7.5557 0.4244 37 1 6.4607 6.8786 0.5951 38 1 8.3297 6.2381 1.4368 39 1 9.8268 4.7120 3.2599 40 1 8.8951 3.4300 4.0698 41 1 9.3625 3.2472 2.3618 42 1 7.0064 3.5925 6.2394 43 1 5.9589 2.2432 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191918516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -162.580182 kcal Electronic energy + Delta-G solvation = -28292.349648 eV Core-core repulsion = 24235.705404 eV Total energy + Delta-G solvation = -4056.644244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79461 -40.19938 -38.39895 -37.77972 -37.32426 -36.95721 -34.40909 -34.03288 -32.70085 -32.35208 -30.19196 -28.81635 -27.22532 -25.13589 -24.31530 -23.45939 -22.88837 -22.16699 -20.63980 -19.58272 -19.01553 -18.36356 -17.92513 -17.69717 -17.24376 -17.09528 -16.70864 -16.50967 -15.96106 -15.42634 -15.29143 -15.13471 -14.79566 -14.58334 -14.53220 -14.07871 -13.67137 -13.59795 -13.46572 -13.33306 -13.28713 -13.21605 -13.01967 -12.95689 -12.89684 -12.84749 -12.80333 -12.54067 -12.38466 -12.21967 -12.00540 -11.92957 -11.70442 -11.60552 -11.12258 -10.62056 -10.53564 -10.13304 -10.03827 -8.11425 -6.26828 -0.66328 -0.53203 -0.19004 1.22837 1.43728 1.47222 1.49393 1.58765 2.04510 2.36591 2.47615 2.73514 3.18950 3.33825 3.46140 3.62302 3.68154 3.89056 3.97382 4.04227 4.12872 4.27591 4.33486 4.46185 4.49882 4.66477 4.69236 4.74387 4.87165 4.91422 4.92563 4.96964 5.07791 5.09202 5.14384 5.14686 5.18480 5.32725 5.59254 5.61600 5.72705 6.02677 6.08003 6.41809 6.51606 6.84876 7.43577 8.94198 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009579 B = 0.004268 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.213607 B = 6558.450141 C = 7716.292544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.347 6.347 4 C 0.515 3.485 5 O -0.539 6.539 6 C -0.174 4.174 7 C 0.003 3.997 8 C -0.145 4.145 9 C 0.055 3.945 10 C -0.157 4.157 11 C -0.698 4.698 12 S 2.703 3.297 13 O -0.997 6.997 14 O -0.975 6.975 15 N -1.093 6.093 16 C 0.282 3.718 17 H 0.014 0.986 18 C -0.155 4.155 19 C -0.533 4.533 20 H 0.078 0.922 21 C 0.016 3.984 22 N -0.919 5.919 23 Si 0.963 3.037 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.261 1.261 27 C 0.025 3.975 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.068 0.932 38 H 0.421 0.579 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.263 0.737 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 2.582 -10.583 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.263 6.263 4 C 0.361 3.639 5 O -0.430 6.430 6 C -0.176 4.176 7 C -0.015 4.015 8 C -0.163 4.163 9 C 0.054 3.946 10 C -0.214 4.214 11 C -0.785 4.785 12 S 2.794 3.206 13 O -0.987 6.987 14 O -0.966 6.966 15 N -0.855 5.855 16 C 0.177 3.823 17 H 0.032 0.968 18 C -0.214 4.214 19 C -0.572 4.572 20 H 0.096 0.904 21 C -0.184 4.184 22 N -0.558 5.558 23 Si 0.788 3.212 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.185 1.185 27 C 0.005 3.995 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.197 0.803 34 H 0.204 0.796 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.257 0.743 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.905 1.718 -11.104 17.877 hybrid contribution -0.186 -0.103 1.246 1.264 sum -14.091 1.614 -9.858 17.273 Atomic orbital electron populations 1.21825 0.89517 1.04610 1.04035 1.23417 0.97558 0.78627 1.02697 1.86504 1.21857 1.34233 1.83738 1.21172 0.81318 0.89442 0.71949 1.90840 1.61317 1.43403 1.47474 1.19199 0.93501 0.91381 1.13529 1.22085 1.01582 0.90713 0.87073 1.21671 0.93927 0.98756 1.01987 1.20261 0.94623 0.94641 0.85109 1.21538 1.03099 0.91453 1.05264 1.30695 1.26940 0.99492 1.21403 1.01315 0.73925 0.72810 0.72538 1.93522 1.75899 1.42349 1.86971 1.93529 1.84697 1.62310 1.56023 1.55338 1.78857 1.29878 1.21448 1.18209 0.92936 0.91014 0.80161 0.96774 1.22161 0.98452 0.99417 1.01393 1.21601 1.46040 0.95212 0.94347 0.90353 1.25735 0.95299 0.96776 1.00631 1.70037 1.49237 1.15540 1.20953 0.85479 0.78421 0.79383 0.77878 1.20170 1.21642 1.18487 1.20950 0.95126 0.96036 0.87374 0.88017 0.91154 0.90633 0.90970 0.91701 0.80296 0.79557 0.87140 0.86355 0.91319 0.74281 0.93782 0.91175 0.95718 0.92737 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 10.29 71.98 0.74 -0.94 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.35 -8.63 9.47 -56.19 -0.53 -9.16 16 4 C 0.51 16.56 7.90 70.33 0.56 17.12 16 5 O -0.54 -20.92 16.14 19.92 0.32 -20.60 16 6 C -0.17 -5.50 5.87 -20.10 -0.12 -5.61 16 7 C 0.00 0.08 9.62 22.53 0.22 0.29 16 8 C -0.15 -3.13 9.66 22.23 0.21 -2.91 16 9 C 0.06 1.55 5.88 -19.80 -0.12 1.43 16 10 C -0.16 -3.65 8.59 71.24 0.61 -3.04 16 11 C -0.70 -24.67 5.71 22.23 0.13 -24.54 16 12 S 2.70 104.40 4.85 -56.49 -0.27 104.12 16 13 O -1.00 -45.67 16.33 -128.00 -2.09 -47.77 16 14 O -0.98 -36.50 16.44 -128.00 -2.10 -38.61 16 15 N -1.09 -42.79 4.27 -172.53 -0.74 -43.53 16 16 C 0.28 13.56 2.77 44.25 0.12 13.69 16 17 H 0.01 0.77 7.83 -2.39 -0.02 0.75 16 18 C -0.15 -7.63 9.29 71.98 0.67 -6.96 16 19 C -0.53 -26.36 8.76 25.60 0.22 -26.13 16 20 H 0.08 3.58 7.81 -2.91 -0.02 3.56 16 21 C 0.02 0.80 5.30 84.65 0.45 1.25 16 22 N -0.92 -50.79 11.32 21.45 0.24 -50.55 16 23 Si 0.96 40.30 29.54 68.60 2.03 42.33 16 24 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 27 C 0.02 0.93 9.09 22.54 0.20 1.13 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.18 2.76 7.61 -2.91 -0.02 2.73 16 34 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.11 2.31 8.00 -2.39 -0.02 2.29 16 36 H 0.12 1.92 8.05 -2.39 -0.02 1.90 16 37 H 0.07 1.81 5.41 -2.38 -0.01 1.80 16 38 H 0.42 14.18 8.45 -96.74 -0.82 13.36 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 41 H 0.02 1.17 7.74 -2.39 -0.02 1.15 16 42 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.13 5.39 6.92 -2.91 -0.02 5.37 16 Total: -1.00 -71.64 373.70 1.43 -70.21 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.22 Total: 27.34 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.35 Total: -33.79 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -0.49 Total: -94.07 kcal Atomic # 8 Polarization: -111.73 SS G_CDS: -4.41 Total: -116.13 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 104.40 SS G_CDS: -0.27 Total: 104.12 kcal Total: -71.64 1.43 -70.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191918516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.367 kcal (2) G-P(sol) polarization free energy of solvation -71.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds