Wall clock time and date at job start Sat Apr 11 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47443 * 2 1 4 4 C 1.34701 * 117.00255 * 180.02562 * 3 2 1 5 5 O 1.21474 * 120.00351 * 359.97438 * 4 3 2 6 6 C 1.47732 * 120.00274 * 179.97438 * 4 3 2 7 7 C 1.39646 * 120.14500 * 0.02562 * 6 4 3 8 8 C 1.37926 * 119.84634 * 179.97438 * 7 6 4 9 9 C 1.38396 * 120.14835 * 359.74192 * 8 7 6 10 10 C 1.50698 * 119.84835 * 180.26096 * 9 8 7 11 11 C 1.38340 * 120.30064 * 0.51238 * 9 8 7 12 12 S 1.76207 * 119.92378 * 179.76850 * 11 9 8 13 13 O 1.42097 * 106.39774 * 310.87318 * 12 11 9 14 14 O 1.42098 * 106.40360 * 177.95405 * 12 11 9 15 15 N 1.65599 * 107.21818 * 64.41234 * 12 11 9 16 16 C 1.46497 * 120.00032 * 66.00172 * 15 12 11 17 17 H 1.08998 * 109.46811 * 23.00911 * 16 15 12 18 18 C 1.52994 * 109.47255 * 263.00523 * 16 15 12 19 19 C 1.50702 * 109.46616 * 143.00250 * 16 15 12 20 20 H 1.07996 * 120.00227 * 0.02562 * 19 16 15 21 21 C 1.37883 * 119.99661 * 180.02562 * 19 16 15 22 22 N 1.31520 * 120.00041 * 359.97438 * 21 19 16 23 23 Si 1.86793 * 120.00005 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47644 * 59.99583 * 23 21 19 25 25 H 1.48499 * 109.47225 * 180.02562 * 23 21 19 26 26 H 1.48511 * 109.46916 * 299.99759 * 23 21 19 27 27 C 1.37963 * 120.15493 * 359.49147 * 11 9 8 28 28 H 1.09006 * 109.47192 * 60.00509 * 1 2 3 29 29 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47297 * 300.00291 * 1 2 3 31 31 H 1.08998 * 109.47297 * 239.99709 * 2 1 3 32 32 H 1.09001 * 109.46959 * 120.00186 * 2 1 3 33 33 H 1.07999 * 120.07638 * 359.97438 * 7 6 4 34 34 H 1.08003 * 119.92513 * 180.02562 * 8 7 6 35 35 H 1.09006 * 109.46727 * 272.38818 * 10 9 8 36 36 H 1.09003 * 109.47303 * 32.38328 * 10 9 8 37 37 H 1.09000 * 109.47086 * 152.38849 * 10 9 8 38 38 H 0.97006 * 119.99719 * 246.00714 * 15 12 11 39 39 H 1.09006 * 109.47135 * 294.10704 * 18 16 15 40 40 H 1.08997 * 109.46977 * 174.10928 * 18 16 15 41 41 H 1.08997 * 109.47514 * 54.11050 * 18 16 15 42 42 H 0.96993 * 119.99861 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.08457 * 180.23579 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0895 0.5821 -0.0005 6 6 3.9142 2.9105 -0.0011 7 6 3.0664 4.0202 -0.0006 8 6 3.6003 5.2919 -0.0007 9 6 4.9728 5.4696 0.0042 10 6 5.5488 6.8621 0.0101 11 6 5.8183 4.3747 -0.0016 12 16 7.5643 4.6124 -0.0015 13 8 7.8408 5.5553 -1.0280 14 8 8.1457 3.3165 0.0406 15 7 7.9587 5.3486 1.4284 16 6 7.7773 4.6342 2.6945 17 1 7.7781 3.5601 2.5089 18 6 6.4438 5.0422 3.3238 19 6 8.9034 4.9825 3.6335 20 1 9.6766 5.6678 3.3188 21 6 8.9466 4.4263 4.8944 22 7 8.0048 3.5922 5.2778 23 14 10.3420 4.8585 6.0586 24 1 10.3403 6.3218 6.3118 25 1 10.1589 4.1334 7.3415 26 1 11.6367 4.4635 5.4476 27 6 5.2978 3.0970 -0.0016 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.9952 3.8829 -0.0002 34 1 2.9458 6.1510 0.0002 35 1 5.6513 7.2172 -1.0154 36 1 4.8840 7.5280 0.5603 37 1 6.5277 6.8484 0.4894 38 1 8.3098 6.2529 1.4277 39 1 6.4817 6.0946 3.6052 40 1 6.2597 4.4354 4.2103 41 1 5.6399 4.8872 2.6042 42 1 8.0350 3.2012 6.1649 43 1 5.9589 2.2431 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191918527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:22 Heat of formation + Delta-G solvation = -140.028175 kcal Electronic energy + Delta-G solvation = -28249.167459 eV Core-core repulsion = 24193.501143 eV Total energy + Delta-G solvation = -4055.666316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.67102 -39.14076 -36.85467 -36.63512 -35.56726 -35.36434 -33.26169 -32.20738 -31.85642 -31.33405 -28.44448 -27.77889 -25.26274 -24.15635 -23.24889 -22.55540 -21.09407 -20.96571 -19.22727 -18.22933 -17.42374 -17.18269 -16.68682 -16.24734 -15.88181 -15.66270 -15.42709 -15.05195 -14.43778 -14.41447 -14.14117 -13.87129 -13.67053 -13.52515 -13.04032 -12.70494 -12.54380 -12.37550 -12.33653 -12.06962 -11.99890 -11.91167 -11.75888 -11.67574 -11.56406 -11.43614 -11.22139 -10.96999 -10.75027 -10.72077 -10.67732 -10.43765 -10.36103 -10.11021 -9.46984 -9.24695 -8.95214 -8.65916 -8.32979 -6.13176 -4.20412 0.46923 0.85873 1.03067 2.35779 2.46066 3.27710 3.32731 3.34530 3.41231 3.67879 4.19069 4.35948 4.41371 4.53846 4.67917 4.68573 4.74829 4.86128 4.92868 5.02845 5.16259 5.20052 5.33580 5.42873 5.50401 5.55166 5.58884 5.67596 5.68358 5.91017 5.98929 6.04619 6.17283 6.27096 6.30154 6.62682 6.74738 6.77268 6.96651 7.53067 7.61891 7.65220 7.82341 7.97085 8.22671 8.81542 9.45440 10.93332 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.003733 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.163676 B = 7498.150051 C = 8693.378086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.512 3.488 5 O -0.499 6.499 6 C -0.157 4.157 7 C -0.011 4.011 8 C -0.158 4.158 9 C 0.060 3.940 10 C -0.148 4.148 11 C -0.681 4.681 12 S 2.689 3.311 13 O -0.975 6.975 14 O -0.956 6.956 15 N -1.097 6.097 16 C 0.268 3.732 17 H 0.052 0.948 18 C -0.155 4.155 19 C -0.523 4.523 20 H 0.065 0.935 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.902 3.098 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.052 3.948 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.410 0.590 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.011 0.989 42 H 0.265 0.735 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 1.376 -10.053 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.357 3.643 5 O -0.388 6.388 6 C -0.159 4.159 7 C -0.030 4.030 8 C -0.176 4.176 9 C 0.059 3.941 10 C -0.204 4.204 11 C -0.765 4.765 12 S 2.776 3.224 13 O -0.965 6.965 14 O -0.946 6.946 15 N -0.859 5.859 16 C 0.164 3.836 17 H 0.070 0.930 18 C -0.214 4.214 19 C -0.563 4.563 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C 0.032 3.968 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.244 0.756 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.707 0.482 -10.550 18.106 hybrid contribution -0.001 0.340 1.118 1.169 sum -14.708 0.822 -9.432 17.492 Atomic orbital electron populations 1.21807 0.92533 1.03021 1.03518 1.23058 0.95292 0.79926 1.02933 1.86505 1.23778 1.32579 1.84509 1.21048 0.80592 0.89734 0.72914 1.90873 1.60250 1.42249 1.45390 1.19075 0.93947 0.90243 1.12649 1.21633 1.00190 0.91596 0.89548 1.21113 0.94523 0.97398 1.04601 1.19822 0.93514 0.94520 0.86255 1.21354 1.02408 0.92191 1.04477 1.31177 1.28350 0.98533 1.18466 1.02034 0.73367 0.73887 0.73085 1.93548 1.84035 1.62799 1.56120 1.93579 1.74030 1.40505 1.86529 1.55590 1.78955 1.28538 1.22794 1.18646 0.94337 0.91981 0.78620 0.92994 1.22262 0.96242 1.01205 1.01708 1.21162 1.08654 1.28325 0.98155 0.91699 1.24916 0.96274 0.94711 0.97934 1.69869 1.32896 1.29731 1.20023 0.86498 0.82312 0.78442 0.79784 1.20205 1.21209 1.20081 1.21060 0.94012 0.96499 0.85183 0.91511 0.90165 0.91377 0.91093 0.90910 0.83975 0.84322 0.88365 0.89579 0.90412 0.75582 0.94438 0.89170 0.96972 0.92516 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.62 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.40 9.47 -40.49 -0.38 -4.78 16 4 C 0.51 7.79 7.90 34.61 0.27 8.06 16 5 O -0.50 -8.97 16.14 -19.25 -0.31 -9.28 16 6 C -0.16 -2.36 5.87 -104.98 -0.62 -2.97 16 7 C -0.01 -0.14 9.62 -39.17 -0.38 -0.51 16 8 C -0.16 -1.82 9.69 -39.64 -0.38 -2.21 16 9 C 0.06 0.84 5.39 -104.53 -0.56 0.28 16 10 C -0.15 -1.77 8.80 36.00 0.32 -1.45 16 11 C -0.68 -11.40 4.97 -39.64 -0.20 -11.59 16 12 S 2.69 50.78 4.91 -107.50 -0.53 50.25 16 13 O -0.98 -18.36 16.45 -57.17 -0.94 -19.31 16 14 O -0.96 -21.39 16.26 -57.17 -0.93 -22.32 16 15 N -1.10 -21.32 4.33 -5.89 -0.03 -21.35 16 16 C 0.27 6.32 2.91 -69.09 -0.20 6.12 16 17 H 0.05 1.37 7.46 -51.93 -0.39 0.98 16 18 C -0.15 -3.41 9.20 37.15 0.34 -3.07 16 19 C -0.52 -13.57 8.77 -34.44 -0.30 -13.87 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.30 11.39 55.43 0.63 -23.67 16 23 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.05 0.88 9.09 -39.17 -0.36 0.53 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.14 1.29 7.61 -52.49 -0.40 0.89 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.08 1.02 4.85 -51.93 -0.25 0.77 16 38 H 0.41 6.99 8.36 -34.47 -0.29 6.71 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 2.23 6.25 -51.93 -0.32 1.90 16 41 H 0.01 0.22 6.65 -51.93 -0.35 -0.12 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.16 2.85 6.92 -52.49 -0.36 2.49 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -32.71 371.19 -9.17 -41.87 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.71 Total: 6.28 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.55 Total: -18.85 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.61 Total: -45.02 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -2.56 Total: -55.69 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 50.78 SS G_CDS: -0.53 Total: 50.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.71 -9.17 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191918527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.154 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds