Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47443 * 2 1 4 4 C 1.34701 * 117.00255 * 180.02562 * 3 2 1 5 5 O 1.21474 * 120.00351 * 359.97438 * 4 3 2 6 6 C 1.47732 * 120.00274 * 179.97438 * 4 3 2 7 7 C 1.39646 * 120.14500 * 0.02562 * 6 4 3 8 8 C 1.37926 * 119.84634 * 179.97438 * 7 6 4 9 9 C 1.38396 * 120.14835 * 359.74192 * 8 7 6 10 10 C 1.50698 * 119.84835 * 180.26096 * 9 8 7 11 11 C 1.38340 * 120.30064 * 0.51238 * 9 8 7 12 12 S 1.76207 * 119.92378 * 179.76850 * 11 9 8 13 13 O 1.42097 * 106.39774 * 310.87318 * 12 11 9 14 14 O 1.42098 * 106.40360 * 177.95405 * 12 11 9 15 15 N 1.65599 * 107.21818 * 64.41234 * 12 11 9 16 16 C 1.46497 * 120.00032 * 66.00172 * 15 12 11 17 17 H 1.08998 * 109.46811 * 23.00911 * 16 15 12 18 18 C 1.52994 * 109.47255 * 263.00523 * 16 15 12 19 19 C 1.50702 * 109.46616 * 143.00250 * 16 15 12 20 20 H 1.07996 * 120.00227 * 0.02562 * 19 16 15 21 21 C 1.37883 * 119.99661 * 180.02562 * 19 16 15 22 22 N 1.31520 * 120.00041 * 359.97438 * 21 19 16 23 23 Si 1.86793 * 120.00005 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47644 * 59.99583 * 23 21 19 25 25 H 1.48499 * 109.47225 * 180.02562 * 23 21 19 26 26 H 1.48511 * 109.46916 * 299.99759 * 23 21 19 27 27 C 1.37963 * 120.15493 * 359.49147 * 11 9 8 28 28 H 1.09006 * 109.47192 * 60.00509 * 1 2 3 29 29 H 1.09000 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47297 * 300.00291 * 1 2 3 31 31 H 1.08998 * 109.47297 * 239.99709 * 2 1 3 32 32 H 1.09001 * 109.46959 * 120.00186 * 2 1 3 33 33 H 1.07999 * 120.07638 * 359.97438 * 7 6 4 34 34 H 1.08003 * 119.92513 * 180.02562 * 8 7 6 35 35 H 1.09006 * 109.46727 * 272.38818 * 10 9 8 36 36 H 1.09003 * 109.47303 * 32.38328 * 10 9 8 37 37 H 1.09000 * 109.47086 * 152.38849 * 10 9 8 38 38 H 0.97006 * 119.99719 * 246.00714 * 15 12 11 39 39 H 1.09006 * 109.47135 * 294.10704 * 18 16 15 40 40 H 1.08997 * 109.46977 * 174.10928 * 18 16 15 41 41 H 1.08997 * 109.47514 * 54.11050 * 18 16 15 42 42 H 0.96993 * 119.99861 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.08457 * 180.23579 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0895 0.5821 -0.0005 6 6 3.9142 2.9105 -0.0011 7 6 3.0664 4.0202 -0.0006 8 6 3.6003 5.2919 -0.0007 9 6 4.9728 5.4696 0.0042 10 6 5.5488 6.8621 0.0101 11 6 5.8183 4.3747 -0.0016 12 16 7.5643 4.6124 -0.0015 13 8 7.8408 5.5553 -1.0280 14 8 8.1457 3.3165 0.0406 15 7 7.9587 5.3486 1.4284 16 6 7.7773 4.6342 2.6945 17 1 7.7781 3.5601 2.5089 18 6 6.4438 5.0422 3.3238 19 6 8.9034 4.9825 3.6335 20 1 9.6766 5.6678 3.3188 21 6 8.9466 4.4263 4.8944 22 7 8.0048 3.5922 5.2778 23 14 10.3420 4.8585 6.0586 24 1 10.3403 6.3218 6.3118 25 1 10.1589 4.1334 7.3415 26 1 11.6367 4.4635 5.4476 27 6 5.2978 3.0970 -0.0016 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.9952 3.8829 -0.0002 34 1 2.9458 6.1510 0.0002 35 1 5.6513 7.2172 -1.0154 36 1 4.8840 7.5280 0.5603 37 1 6.5277 6.8484 0.4894 38 1 8.3098 6.2529 1.4277 39 1 6.4817 6.0946 3.6052 40 1 6.2597 4.4354 4.2103 41 1 5.6399 4.8872 2.6042 42 1 8.0350 3.2012 6.1649 43 1 5.9589 2.2431 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191918527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = -161.900089 kcal Electronic energy + Delta-G solvation = -28250.115896 eV Core-core repulsion = 24193.501143 eV Total energy + Delta-G solvation = -4056.614753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79492 -40.22578 -38.41296 -37.77887 -37.34224 -36.97450 -34.44021 -34.01682 -32.70040 -32.34943 -30.20119 -28.81709 -27.23947 -25.13368 -24.32640 -23.45209 -22.84064 -22.16961 -20.63644 -19.59396 -19.09243 -18.37422 -17.86450 -17.69250 -17.27259 -17.11795 -16.70994 -16.50594 -15.95259 -15.38067 -15.35144 -15.12405 -14.86454 -14.57509 -14.53290 -14.07355 -13.65850 -13.59821 -13.46789 -13.35386 -13.24890 -13.23575 -13.04572 -12.96257 -12.89326 -12.84585 -12.78153 -12.53620 -12.47342 -12.21834 -12.00789 -11.91919 -11.68871 -11.59855 -11.14317 -10.60908 -10.57769 -10.10484 -10.04013 -8.14111 -6.28175 -0.67308 -0.54730 -0.19768 1.23276 1.44078 1.45707 1.47929 1.54828 2.05362 2.37964 2.45320 2.72945 3.16175 3.33192 3.45634 3.62747 3.67624 3.89284 3.98093 4.04943 4.10902 4.27484 4.33959 4.45957 4.51547 4.66414 4.69898 4.74789 4.88855 4.92188 4.92501 4.97973 5.02672 5.08812 5.09682 5.15986 5.18473 5.33676 5.58484 5.61476 5.75368 6.02830 6.11339 6.40671 6.52571 6.82054 7.41259 8.91384 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.003733 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.163676 B = 7498.150051 C = 8693.378086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.346 6.346 4 C 0.514 3.486 5 O -0.540 6.540 6 C -0.171 4.171 7 C 0.006 3.994 8 C -0.142 4.142 9 C 0.056 3.944 10 C -0.155 4.155 11 C -0.694 4.694 12 S 2.700 3.300 13 O -0.976 6.976 14 O -1.004 7.004 15 N -1.093 6.093 16 C 0.274 3.726 17 H 0.012 0.988 18 C -0.140 4.140 19 C -0.542 4.542 20 H 0.069 0.931 21 C 0.017 3.983 22 N -0.915 5.915 23 Si 0.963 3.037 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.277 1.277 27 C 0.025 3.975 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.181 0.819 34 H 0.190 0.810 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.061 0.939 38 H 0.420 0.580 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.087 3.849 -10.227 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.262 6.262 4 C 0.360 3.640 5 O -0.432 6.432 6 C -0.173 4.173 7 C -0.012 4.012 8 C -0.160 4.160 9 C 0.054 3.946 10 C -0.211 4.211 11 C -0.782 4.782 12 S 2.792 3.208 13 O -0.966 6.966 14 O -0.994 6.994 15 N -0.855 5.855 16 C 0.169 3.831 17 H 0.030 0.970 18 C -0.199 4.199 19 C -0.582 4.582 20 H 0.087 0.913 21 C -0.184 4.184 22 N -0.553 5.553 23 Si 0.788 3.212 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.203 1.203 27 C 0.006 3.994 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.198 0.802 34 H 0.207 0.793 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.257 0.743 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.451 2.992 -10.736 20.706 hybrid contribution 0.739 -0.453 1.078 1.383 sum -16.712 2.539 -9.657 19.468 Atomic orbital electron populations 1.21824 0.89486 1.04584 1.04075 1.23409 0.97563 0.78663 1.02653 1.86498 1.21829 1.34159 1.83734 1.21214 0.81315 0.89513 0.71957 1.90853 1.61359 1.43510 1.47441 1.19175 0.93348 0.91350 1.13440 1.22095 1.01579 0.90627 0.86913 1.21661 0.93771 0.98738 1.01807 1.20238 0.94583 0.94425 0.85331 1.21528 1.02320 0.91513 1.05755 1.30621 1.26464 0.99579 1.21557 1.01322 0.74238 0.72666 0.72612 1.93532 1.84835 1.62508 1.55738 1.93519 1.76216 1.42701 1.86974 1.55293 1.79871 1.28726 1.21589 1.18305 0.94827 0.90248 0.79742 0.96993 1.22036 0.95968 1.01080 1.00852 1.21573 1.09474 1.28314 0.98808 0.91314 1.25704 0.98449 0.94666 0.99556 1.70009 1.34425 1.30608 1.20302 0.85543 0.79225 0.78777 0.77666 1.18809 1.21082 1.20258 1.20913 0.95141 0.95964 0.87419 0.90648 0.88116 0.91031 0.91121 0.91686 0.80211 0.79321 0.87004 0.86009 0.92066 0.74297 0.93294 0.91995 0.94668 0.92622 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 10.29 71.98 0.74 -0.79 16 2 C 0.05 0.94 6.19 71.98 0.45 1.39 16 3 O -0.35 -8.09 9.47 -56.10 -0.53 -8.62 16 4 C 0.51 15.78 7.90 70.33 0.56 16.34 16 5 O -0.54 -20.54 16.14 19.92 0.32 -20.22 16 6 C -0.17 -5.04 5.87 -20.10 -0.12 -5.16 16 7 C 0.01 0.12 9.62 22.54 0.22 0.33 16 8 C -0.14 -2.59 9.69 22.23 0.22 -2.38 16 9 C 0.06 1.40 5.39 -19.80 -0.11 1.29 16 10 C -0.16 -3.18 8.80 71.24 0.63 -2.55 16 11 C -0.69 -23.29 4.97 22.23 0.11 -23.18 16 12 S 2.70 105.54 4.91 -56.49 -0.28 105.26 16 13 O -0.98 -36.95 16.45 -128.00 -2.11 -39.06 16 14 O -1.00 -48.29 16.26 -128.00 -2.08 -50.37 16 15 N -1.09 -43.28 4.33 -172.53 -0.75 -44.03 16 16 C 0.27 13.30 2.91 44.24 0.13 13.43 16 17 H 0.01 0.69 7.46 -2.39 -0.02 0.67 16 18 C -0.14 -6.18 9.20 71.98 0.66 -5.52 16 19 C -0.54 -28.57 8.77 25.60 0.22 -28.34 16 20 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 21 C 0.02 0.89 5.30 84.66 0.45 1.34 16 22 N -0.91 -51.33 11.39 21.45 0.24 -51.09 16 23 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 27 C 0.03 0.91 9.09 22.54 0.20 1.11 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.18 2.30 7.61 -2.91 -0.02 2.28 16 34 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.12 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.06 1.48 4.85 -2.39 -0.01 1.47 16 38 H 0.42 14.38 8.36 -96.74 -0.81 13.57 16 39 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.06 3.11 6.25 -2.39 -0.01 3.10 16 41 H 0.03 1.34 6.65 -2.39 -0.02 1.32 16 42 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.13 5.18 6.92 -2.91 -0.02 5.16 16 Total: -1.00 -74.98 371.19 1.44 -73.53 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.24 Total: 22.86 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 4.36 Total: -32.68 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -0.50 Total: -95.12 kcal Atomic # 8 Polarization: -113.87 SS G_CDS: -4.40 Total: -118.27 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 105.54 SS G_CDS: -0.28 Total: 105.26 kcal Total: -74.98 1.44 -73.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191918527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.367 kcal (2) G-P(sol) polarization free energy of solvation -74.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds