Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05922 * 359.72826 * 4 3 2 6 6 C 1.38122 * 119.94483 * 179.73989 * 5 4 3 7 7 C 1.38286 * 120.05406 * 0.51239 * 6 5 4 8 8 S 1.76199 * 119.94251 * 179.74277 * 7 6 5 9 9 O 1.42103 * 106.40359 * 228.56061 * 8 7 6 10 10 O 1.42105 * 106.40135 * 1.48016 * 8 7 6 11 11 N 1.65599 * 107.21901 * 115.02206 * 8 7 6 12 12 C 1.47072 * 136.05503 * 269.63159 * 11 8 7 13 13 C 1.53243 * 88.08024 * 207.20259 * 12 11 8 14 14 O 1.42894 * 114.01706 * 87.71691 * 13 12 11 15 15 C 1.50704 * 114.32145 * 220.47270 * 13 12 11 16 16 H 1.08000 * 120.00216 * 93.76100 * 15 13 12 17 17 C 1.37882 * 119.99442 * 273.75438 * 15 13 12 18 18 N 1.31509 * 120.00573 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99711 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47328 * 89.99925 * 19 17 15 21 21 H 1.48495 * 109.47054 * 210.00407 * 19 17 15 22 22 H 1.48507 * 109.46834 * 330.00140 * 19 17 15 23 23 C 1.47066 * 136.05900 * 89.99400 * 11 8 7 24 24 C 1.38245 * 120.11304 * 359.76190 * 7 6 5 25 25 C 1.50704 * 119.97222 * 179.97438 * 24 7 6 26 26 C 1.38173 * 120.05607 * 359.97438 * 24 7 6 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 1.08003 * 120.02200 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.96810 * 180.25032 * 6 5 4 34 34 H 1.08994 * 113.46813 * 321.93363 * 12 11 8 35 35 H 1.09003 * 113.46736 * 92.37354 * 12 11 8 36 36 H 0.96697 * 114.00174 * 86.39475 * 14 13 12 37 37 H 0.96995 * 120.00345 * 180.02562 * 18 17 15 38 38 H 1.08993 * 113.47365 * 267.62619 * 23 11 8 39 39 H 1.09000 * 113.46557 * 38.07369 * 23 11 8 40 40 H 1.08989 * 109.47387 * 270.02488 * 25 24 7 41 41 H 1.09002 * 109.46581 * 30.02752 * 25 24 7 42 42 H 1.08999 * 109.46711 * 150.02339 * 25 24 7 43 43 H 1.07998 * 120.02728 * 180.02562 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.2000 0.4259 0.0046 6 6 5.5689 0.6096 -0.0014 7 6 6.0962 1.8880 -0.0018 8 16 7.8430 2.1189 -0.0026 9 8 8.1230 3.0661 1.0190 10 8 8.4193 0.8204 -0.0379 11 7 8.2406 2.8461 -1.4362 12 6 8.6223 2.3943 -2.7828 13 6 9.3876 3.7111 -2.9517 14 8 10.7346 3.6660 -2.4768 15 6 9.2544 4.3357 -4.3167 16 1 8.4924 5.0792 -4.4984 17 6 10.1056 3.9581 -5.3336 18 7 11.0332 3.0525 -5.1125 19 14 9.9410 4.7328 -7.0254 20 1 10.7929 5.9469 -7.0989 21 1 10.3755 3.7599 -8.0597 22 1 8.5237 5.1074 -7.2625 23 6 8.3738 4.2280 -1.9215 24 6 5.2551 2.9851 -0.0012 25 6 5.8331 4.3769 -0.0011 26 6 3.8849 2.8067 -0.0007 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7886 -0.5727 0.0095 33 1 6.2280 -0.2460 -0.0014 34 1 9.2679 1.5161 -2.7792 35 1 7.7764 2.2935 -3.4628 36 1 11.3706 3.3401 -3.1281 37 1 11.6322 2.7871 -5.8278 38 1 7.4612 4.6206 -2.3697 39 1 8.8088 4.9059 -1.1870 40 1 5.9732 4.7120 1.0264 41 1 6.7939 4.3712 -0.5158 42 1 5.1501 5.0539 -0.5142 43 1 3.2283 3.6641 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191993135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = -93.812193 kcal Electronic energy + Delta-G solvation = -28200.046917 eV Core-core repulsion = 24146.384676 eV Total energy + Delta-G solvation = -4053.662241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45211 -38.71926 -38.03581 -36.78686 -35.37108 -34.00920 -32.74381 -32.38479 -32.14136 -30.02380 -27.87136 -27.29305 -25.11779 -24.71712 -23.94026 -23.08355 -21.33192 -19.72804 -18.44436 -18.16502 -17.59606 -17.16677 -16.68311 -16.49696 -16.31649 -15.38458 -15.00725 -14.63434 -14.29674 -14.15100 -14.02574 -13.77837 -13.46545 -13.32498 -13.27471 -13.13741 -12.99191 -12.83457 -12.33528 -12.04675 -12.03530 -11.88125 -11.64805 -11.63425 -11.51575 -11.45403 -11.12046 -11.08336 -11.05651 -10.79733 -10.59424 -10.46330 -10.21524 -9.29843 -8.97807 -8.76484 -8.73493 -8.51812 -8.04724 -6.36034 -4.46568 0.70961 0.97584 1.16360 2.78668 3.16614 3.22692 3.25061 3.26954 3.58227 4.19042 4.23942 4.42467 4.50963 4.56316 4.61226 4.75203 4.81698 4.88357 4.95058 4.99904 5.22920 5.26612 5.36683 5.43126 5.54497 5.61386 5.65973 5.76012 5.81183 6.00644 6.04542 6.06421 6.10145 6.21483 6.36482 6.38205 6.52072 6.69791 6.82213 7.02943 7.08331 7.50058 7.68408 7.85984 8.56594 9.24104 9.56380 10.70375 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003267 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.425365 B = 8567.966464 C = 9482.995948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.313 6.313 4 C 0.180 3.820 5 C -0.239 4.239 6 C 0.022 3.978 7 C -0.717 4.717 8 S 2.713 3.287 9 O -0.961 6.961 10 O -0.965 6.965 11 N -1.032 6.032 12 C 0.101 3.899 13 C 0.246 3.754 14 O -0.571 6.571 15 C -0.532 4.532 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.125 3.875 24 C 0.061 3.939 25 C -0.153 4.153 26 C -0.178 4.178 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.394 0.606 37 H 0.274 0.726 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.864 -4.198 7.242 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.226 6.226 4 C 0.134 3.866 5 C -0.258 4.258 6 C 0.002 3.998 7 C -0.802 4.802 8 S 2.805 3.195 9 O -0.951 6.951 10 O -0.956 6.956 11 N -0.872 5.872 12 C -0.024 4.024 13 C 0.201 3.799 14 O -0.385 6.385 15 C -0.572 4.572 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.736 3.264 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.001 3.999 24 C 0.059 3.941 25 C -0.209 4.209 26 C -0.197 4.197 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.681 -4.312 8.597 19.255 hybrid contribution -0.753 -0.404 -1.627 1.838 sum -17.433 -4.716 6.970 19.358 Atomic orbital electron populations 1.21781 0.92481 1.02999 1.03631 1.22878 0.96066 0.81679 1.01840 1.86089 1.18999 1.29831 1.87688 1.19168 0.82089 0.94294 0.91086 1.21286 0.94292 0.98207 1.12039 1.20745 0.94892 0.95704 0.88421 1.31207 1.28276 0.99087 1.21653 1.01318 0.73039 0.72838 0.72284 1.93545 1.83913 1.62785 1.54869 1.93510 1.75772 1.39780 1.86489 1.59997 1.81957 1.19388 1.25871 1.23684 0.98371 1.02664 0.77727 1.19517 0.80836 0.89498 0.90011 1.86027 1.17824 1.88823 1.45789 1.21476 1.17633 1.24223 0.93821 0.90906 1.25093 0.94395 0.93959 0.99709 1.69269 1.19400 1.30624 1.34384 0.86327 0.78696 0.79051 0.82371 1.20280 1.20994 1.19604 1.22929 0.98885 0.81972 0.96163 1.19340 0.92172 0.94565 0.88002 1.21475 1.02456 0.92128 1.04853 1.20348 0.94556 0.95022 1.09767 0.91383 0.90208 0.91465 0.91705 0.91605 0.84829 0.83780 0.91343 0.90560 0.74916 0.91557 0.89791 0.90890 0.88437 0.89945 0.89755 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.50 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.31 -3.56 10.14 -19.44 -0.20 -3.75 16 4 C 0.18 2.33 6.69 -39.22 -0.26 2.07 16 5 C -0.24 -3.02 9.04 -39.43 -0.36 -3.37 16 6 C 0.02 0.32 9.54 -39.61 -0.38 -0.06 16 7 C -0.72 -11.76 5.91 -39.56 -0.23 -12.00 16 8 S 2.71 52.38 5.47 -107.50 -0.59 51.80 16 9 O -0.96 -19.90 16.45 -57.17 -0.94 -20.84 16 10 O -0.96 -20.65 16.96 -57.17 -0.97 -21.62 16 11 N -1.03 -20.79 3.94 -125.30 -0.49 -21.29 16 12 C 0.10 2.20 8.13 -8.63 -0.07 2.13 16 13 C 0.25 5.80 1.57 -91.38 -0.14 5.66 16 14 O -0.57 -14.75 13.53 -35.23 -0.48 -15.22 16 15 C -0.53 -13.01 8.69 -34.44 -0.30 -13.31 16 16 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 18 N -0.90 -22.75 11.01 55.43 0.61 -22.14 16 19 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C 0.13 2.50 5.73 -8.50 -0.05 2.45 16 24 C 0.06 0.90 5.87 -104.64 -0.61 0.29 16 25 C -0.15 -2.08 8.73 36.01 0.31 -1.77 16 26 C -0.18 -2.38 9.64 -39.43 -0.38 -2.76 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 31 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 32 H 0.13 1.28 6.30 -52.48 -0.33 0.95 16 33 H 0.14 1.98 7.33 -52.49 -0.38 1.60 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 36 H 0.39 10.33 6.33 45.56 0.29 10.61 16 37 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 38 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.10 1.26 8.14 -51.94 -0.42 0.84 16 41 H 0.08 1.25 2.80 -51.93 -0.15 1.11 16 42 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -30.43 364.05 -9.69 -40.11 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.11 Total: 12.21 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.98 Total: -18.91 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.12 Total: -43.42 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -2.58 Total: -61.44 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 52.38 SS G_CDS: -0.59 Total: 51.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.43 -9.69 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191993135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.698 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds