Wall clock time and date at job start Sat Apr 11 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.35904 * 116.99628 * 179.97438 * 16 15 13 18 18 C 1.38758 * 120.05922 * 359.72826 * 17 16 15 19 19 C 1.38121 * 119.94303 * 179.69478 * 18 17 16 20 20 C 1.38284 * 120.05670 * 0.60266 * 19 18 17 21 21 C 1.38245 * 120.11162 * 359.67148 * 20 19 18 22 22 S 1.76205 * 119.97212 * 180.02562 * 21 20 19 23 23 C 1.81401 * 104.44963 * 270.02343 * 22 21 20 24 24 O 1.42096 * 104.27416 * 26.09609 * 22 21 20 25 25 O 1.42097 * 104.27296 * 153.95315 * 22 21 20 26 26 C 1.38173 * 120.05607 * 0.02881 * 21 20 19 27 27 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 28 28 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 1.08003 * 120.02200 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.96674 * 180.29445 * 19 18 17 39 39 H 1.08003 * 119.94493 * 179.69558 * 20 19 18 40 40 H 1.09004 * 109.46858 * 60.00134 * 23 22 21 41 41 H 1.08993 * 109.46925 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47254 * 300.00164 * 23 22 21 43 43 H 1.07998 * 120.02728 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1289 1.6916 4.8143 18 6 1.6646 0.3969 4.9975 19 6 1.4954 -0.1006 6.2748 20 6 1.7764 0.6946 7.3707 21 6 2.2337 1.9868 7.1909 22 16 2.5913 2.9967 8.5899 23 6 1.0270 3.8416 8.9499 24 8 2.9060 2.0697 9.6199 25 8 3.5601 3.9217 8.1157 26 6 2.4106 2.4871 5.9151 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.6747 3.5148 -4.4447 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 1.4400 -0.2228 4.1419 38 1 1.1386 -1.1098 6.4178 39 1 1.6388 0.3054 8.3687 40 1 0.2565 3.1021 9.1681 41 1 1.1574 4.4954 9.8122 42 1 0.7272 4.4347 8.0859 43 1 2.7682 3.4965 5.7752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193840157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:26 Heat of formation + Delta-G solvation = -105.562359 kcal Electronic energy + Delta-G solvation = -26984.368564 eV Core-core repulsion = 22930.196798 eV Total energy + Delta-G solvation = -4054.171766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53416 -39.09899 -37.49384 -37.35541 -36.23110 -35.41532 -32.89619 -31.73288 -30.71416 -30.24032 -29.86523 -28.81832 -26.57683 -23.76454 -23.17719 -22.94569 -22.34099 -19.58630 -18.73847 -18.59908 -16.96705 -16.69800 -16.59759 -16.51903 -16.37666 -16.16723 -15.96387 -15.48271 -15.15305 -14.37700 -14.27240 -14.14403 -13.75137 -13.62575 -13.57268 -13.39695 -13.09189 -12.90854 -12.47531 -12.37725 -12.32880 -12.26264 -12.13255 -11.86264 -11.64241 -11.43667 -11.34984 -11.21319 -10.97274 -10.91317 -10.81020 -10.62056 -10.18820 -9.71087 -9.69111 -9.06618 -8.55775 -8.48750 -7.82392 -6.09797 -4.14800 -0.29935 0.47795 1.04413 2.48297 2.75758 3.10638 3.17550 3.27414 3.35825 3.39836 3.62018 3.78000 3.96241 4.36907 4.37504 4.41444 4.52894 4.60098 4.72694 4.76127 4.88604 5.03089 5.04015 5.11723 5.21253 5.23260 5.25438 5.46622 5.50176 5.60672 5.68928 5.85743 5.88954 5.93949 6.09128 6.22683 6.33662 6.89371 7.15201 7.33917 7.42504 7.86150 8.15485 8.22419 8.79246 8.94025 9.50654 10.98450 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.002328 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.789808 B =12027.124247 C =12848.090030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.515 6.515 15 C 0.038 3.962 16 O -0.282 6.282 17 C 0.119 3.881 18 C -0.160 4.160 19 C -0.098 4.098 20 C -0.070 4.070 21 C -0.622 4.622 22 S 2.503 3.497 23 C -0.649 4.649 24 O -0.938 6.938 25 O -0.932 6.932 26 C -0.056 4.056 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -7.432 23.066 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.390 6.390 15 C -0.040 4.040 16 O -0.194 6.194 17 C 0.072 3.928 18 C -0.179 4.179 19 C -0.116 4.116 20 C -0.090 4.090 21 C -0.708 4.708 22 S 2.682 3.318 23 C -0.799 4.799 24 O -0.935 6.935 25 O -0.929 6.929 26 C -0.075 4.075 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.513 -6.442 23.206 25.894 hybrid contribution 0.080 -0.732 -1.099 1.323 sum -9.434 -7.174 22.107 25.084 Atomic orbital electron populations 1.22248 0.96551 1.01638 1.02503 1.21491 0.93678 0.84059 1.02942 1.48209 1.63910 1.13333 1.07170 1.19344 0.96546 0.93722 0.77492 1.21449 0.96810 1.32143 1.06343 0.92359 1.24934 0.97968 0.94814 0.96354 1.69937 1.35655 1.33369 1.14305 0.86424 0.84465 0.78149 0.78279 1.19781 1.20936 1.20792 1.19638 0.79851 0.87174 0.84189 1.90736 1.44132 1.17519 1.86615 1.22810 1.01698 0.93499 0.86041 1.86246 1.81832 1.40323 1.10982 1.19162 0.95809 0.92523 0.85313 1.21656 1.01986 0.95073 0.99177 1.21073 0.98926 1.00023 0.91622 1.20810 0.96152 0.91928 1.00061 1.30429 1.15441 1.10071 1.14877 1.05155 0.77152 0.75194 0.74339 1.30214 1.22492 1.14751 1.12465 1.93584 1.82238 1.61871 1.55788 1.93620 1.55201 1.63835 1.80255 1.20194 0.97823 1.00856 0.88624 0.93199 0.91684 0.91910 0.89365 0.91994 0.94615 0.93699 0.92683 0.89479 0.89386 0.84514 0.84707 0.84030 0.84950 0.84943 0.84712 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.10 1.48 5.93 -4.05 -0.02 1.45 16 3 N -0.59 -11.92 2.46 -175.06 -0.43 -12.35 16 4 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 10.38 7.75 -10.98 -0.09 10.30 16 14 O -0.51 -13.26 16.08 -14.35 -0.23 -13.49 16 15 C 0.04 0.55 3.77 36.01 0.14 0.69 16 16 O -0.28 -4.57 9.67 -39.35 -0.38 -4.95 16 17 C 0.12 1.55 6.69 -39.22 -0.26 1.28 16 18 C -0.16 -1.60 9.04 -39.43 -0.36 -1.95 16 19 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 20 C -0.07 -0.60 9.47 -39.56 -0.37 -0.98 16 21 C -0.62 -5.99 5.66 -39.60 -0.22 -6.22 16 22 S 2.50 20.21 5.80 -107.50 -0.62 19.59 16 23 C -0.65 -2.43 10.80 101.05 1.09 -1.34 16 24 O -0.94 -9.94 17.12 -57.54 -0.99 -10.93 16 25 O -0.93 -11.24 17.12 -57.54 -0.99 -12.23 16 26 C -0.06 -0.67 9.41 -39.43 -0.37 -1.04 16 27 H 0.05 0.54 7.22 -51.93 -0.38 0.17 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.09 0.97 6.69 -51.93 -0.35 0.62 16 36 H 0.09 1.07 6.94 -51.93 -0.36 0.71 16 37 H 0.14 1.07 6.30 -52.48 -0.33 0.74 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.89 7.57 -52.48 -0.40 0.50 16 40 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 41 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.15 1.80 7.57 -52.49 -0.40 1.40 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -39.51 378.36 -9.00 -48.51 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.85 Total: -3.28 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.94 Total: -7.80 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.31 Total: -37.85 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.58 Total: -41.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 20.21 SS G_CDS: -0.62 Total: 19.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.51 -9.00 -48.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193840157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.057 kcal (2) G-P(sol) polarization free energy of solvation -39.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds