Wall clock time and date at job start Sat Apr 11 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.35904 * 116.99628 * 179.97438 * 16 15 13 18 18 C 1.38758 * 120.05922 * 359.72826 * 17 16 15 19 19 C 1.38121 * 119.94303 * 179.69478 * 18 17 16 20 20 C 1.38284 * 120.05670 * 0.60266 * 19 18 17 21 21 C 1.38245 * 120.11162 * 359.67148 * 20 19 18 22 22 S 1.76205 * 119.97212 * 180.02562 * 21 20 19 23 23 C 1.81401 * 104.44963 * 270.02343 * 22 21 20 24 24 O 1.42096 * 104.27416 * 26.09609 * 22 21 20 25 25 O 1.42097 * 104.27296 * 153.95315 * 22 21 20 26 26 C 1.38173 * 120.05607 * 0.02881 * 21 20 19 27 27 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 28 28 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 1.08003 * 120.02200 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.96674 * 180.29445 * 19 18 17 39 39 H 1.08003 * 119.94493 * 179.69558 * 20 19 18 40 40 H 1.09004 * 109.46858 * 60.00134 * 23 22 21 41 41 H 1.08993 * 109.46925 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47254 * 300.00164 * 23 22 21 43 43 H 1.07998 * 120.02728 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1289 1.6916 4.8143 18 6 1.6646 0.3969 4.9975 19 6 1.4954 -0.1006 6.2748 20 6 1.7764 0.6946 7.3707 21 6 2.2337 1.9868 7.1909 22 16 2.5913 2.9967 8.5899 23 6 1.0270 3.8416 8.9499 24 8 2.9060 2.0697 9.6199 25 8 3.5601 3.9217 8.1157 26 6 2.4106 2.4871 5.9151 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.6747 3.5148 -4.4447 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 1.4400 -0.2228 4.1419 38 1 1.1386 -1.1098 6.4178 39 1 1.6388 0.3054 8.3687 40 1 0.2565 3.1021 9.1681 41 1 1.1574 4.4954 9.8122 42 1 0.7272 4.4347 8.0859 43 1 2.7682 3.4965 5.7752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193840157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:25 Heat of formation + Delta-G solvation = -134.954072 kcal Electronic energy + Delta-G solvation = -26985.643084 eV Core-core repulsion = 22930.196798 eV Total energy + Delta-G solvation = -4055.446286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56437 -40.47220 -38.44971 -38.13694 -37.03538 -36.97735 -34.96045 -32.46863 -31.82834 -31.45730 -30.24925 -30.13317 -28.27314 -25.10312 -24.44989 -23.94970 -23.44070 -20.47719 -20.09173 -19.39816 -18.68380 -18.08409 -17.74192 -17.42800 -17.21322 -17.07234 -16.94032 -16.82343 -16.34175 -15.97174 -15.60681 -14.90477 -14.80707 -14.61799 -14.43834 -14.15061 -14.00545 -13.91145 -13.76057 -13.58215 -13.30058 -13.22323 -13.15102 -13.09434 -13.01652 -12.71541 -12.57631 -12.48002 -12.38329 -12.17616 -12.00962 -11.86734 -11.72068 -11.59153 -10.71551 -10.67644 -10.40571 -9.55209 -9.40535 -8.25959 -6.40351 -0.87676 -0.25172 0.28002 1.34147 1.37399 1.47648 1.56789 1.64021 1.90598 2.34726 2.40255 2.62072 3.02748 3.04345 3.23349 3.41844 3.69933 3.82774 3.97532 3.99042 4.08301 4.13056 4.15314 4.16130 4.27782 4.39368 4.47561 4.60933 4.77523 4.89692 4.96184 4.98000 4.98051 5.03102 5.15998 5.17966 5.23454 5.38752 5.51529 5.55440 5.78536 6.01826 6.23174 6.62730 6.70153 7.21814 7.36279 8.81656 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.002328 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.789808 B =12027.124247 C =12848.090030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.284 1.284 13 C 0.494 3.506 14 O -0.586 6.586 15 C 0.053 3.947 16 O -0.322 6.322 17 C 0.088 3.912 18 C -0.157 4.157 19 C -0.091 4.091 20 C -0.070 4.070 21 C -0.623 4.623 22 S 2.506 3.494 23 C -0.622 4.622 24 O -0.967 6.967 25 O -0.984 6.984 26 C -0.084 4.084 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.030 0.970 33 H -0.004 1.004 34 H 0.268 0.732 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 -10.707 25.244 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.191 1.191 12 H -0.210 1.210 13 C 0.282 3.718 14 O -0.466 6.466 15 C -0.025 4.025 16 O -0.236 6.236 17 C 0.042 3.958 18 C -0.176 4.176 19 C -0.110 4.110 20 C -0.088 4.088 21 C -0.709 4.709 22 S 2.689 3.311 23 C -0.776 4.776 24 O -0.964 6.964 25 O -0.982 6.982 26 C -0.103 4.103 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.048 0.952 33 H 0.014 0.986 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.181 0.819 38 H 0.192 0.808 39 H 0.185 0.815 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.165 0.835 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.002 -9.809 25.386 29.355 hybrid contribution 0.432 0.285 -1.657 1.736 sum -10.570 -9.524 23.729 27.667 Atomic orbital electron populations 1.22192 0.94155 1.03910 1.01898 1.21909 0.95638 0.80729 1.04611 1.48209 1.63639 1.15402 1.05529 1.18767 0.95536 0.91572 0.80046 1.21730 0.97866 1.32107 1.06499 0.92819 1.25848 1.02360 0.94450 0.96478 1.70050 1.37680 1.34187 1.14807 0.85375 0.79009 0.77975 0.78491 1.19164 1.19150 1.20984 1.20763 0.78195 0.86644 0.86200 1.90692 1.47270 1.20781 1.87862 1.22717 1.04687 0.92633 0.82434 1.86177 1.83070 1.41872 1.12462 1.19410 0.98138 0.94313 0.83892 1.21974 1.00817 0.93727 1.01035 1.21561 0.97379 1.01474 0.90571 1.21289 0.94622 0.91227 1.01698 1.30551 1.15093 1.11124 1.14083 1.04915 0.78549 0.74457 0.73191 1.30018 1.18511 1.15188 1.13909 1.93539 1.83937 1.62923 1.55999 1.93557 1.59055 1.64691 1.80877 1.20229 0.99528 1.00707 0.89843 0.91940 0.94245 0.88061 0.90366 0.87655 0.95169 0.98631 0.92348 0.85349 0.86276 0.81856 0.80828 0.81501 0.82015 0.82630 0.83545 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.09 2.49 5.93 86.38 0.51 3.00 16 3 N -0.60 -24.35 2.46 -826.16 -2.03 -26.38 16 4 C 0.26 14.02 5.16 85.64 0.44 14.46 16 5 C -0.54 -31.33 9.39 25.60 0.24 -31.09 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 9 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 C 0.49 20.74 7.75 87.66 0.68 21.42 16 14 O -0.59 -32.24 16.08 16.01 0.26 -31.98 16 15 C 0.05 1.45 3.77 71.24 0.27 1.72 16 16 O -0.32 -10.58 9.67 -73.43 -0.71 -11.29 16 17 C 0.09 2.23 6.69 22.51 0.15 2.38 16 18 C -0.16 -2.60 9.04 22.37 0.20 -2.40 16 19 C -0.09 -1.13 10.04 22.25 0.22 -0.90 16 20 C -0.07 -0.98 9.47 22.28 0.21 -0.77 16 21 C -0.62 -11.44 5.66 22.26 0.13 -11.32 16 22 S 2.51 39.15 5.80 -56.49 -0.33 38.83 16 23 C -0.62 -2.77 10.80 113.37 1.22 -1.55 16 24 O -0.97 -19.61 17.12 -127.65 -2.19 -21.80 16 25 O -0.98 -25.19 17.12 -127.65 -2.19 -27.38 16 26 C -0.08 -2.07 9.41 22.37 0.21 -1.86 16 27 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 2.26 8.07 -2.38 -0.02 2.25 16 31 H 0.11 1.92 6.44 -2.39 -0.02 1.91 16 32 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 33 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 35 H 0.13 2.39 6.69 -2.39 -0.02 2.37 16 36 H 0.12 2.48 6.94 -2.39 -0.02 2.46 16 37 H 0.16 1.70 6.30 -2.91 -0.02 1.68 16 38 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.17 1.46 7.57 -2.91 -0.02 1.44 16 40 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.13 3.60 7.57 -2.91 -0.02 3.58 16 Total: -1.00 -95.07 378.36 1.84 -93.23 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.02 Total: 4.09 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.69 Total: -8.66 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.74 Total: -82.34 kcal Atomic # 8 Polarization: -87.62 SS G_CDS: -4.82 Total: -92.45 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 39.15 SS G_CDS: -0.33 Total: 38.83 kcal Total: -95.07 1.84 -93.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193840157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.724 kcal (2) G-P(sol) polarization free energy of solvation -95.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds