Wall clock time and date at job start Sat Apr 11 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46564 * 299.72723 * 6 4 3 8 8 N 1.46493 * 109.47128 * 179.72247 * 6 4 3 9 9 S 1.65605 * 119.99616 * 144.99923 * 8 6 4 10 10 O 1.42100 * 104.27423 * 181.06966 * 9 8 6 11 11 O 1.42097 * 104.27830 * 308.92588 * 9 8 6 12 12 C 1.81401 * 104.44827 * 65.00151 * 9 8 6 13 13 C 1.53000 * 109.46866 * 179.97438 * 12 9 8 14 14 C 1.50699 * 109.47161 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99706 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00448 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99686 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47227 * 89.99844 * 18 16 14 20 20 H 1.48497 * 109.47217 * 209.99914 * 18 16 14 21 21 H 1.48498 * 109.47062 * 329.99854 * 18 16 14 22 22 C 1.50700 * 109.46871 * 59.72047 * 6 4 3 23 23 C 1.38240 * 119.99637 * 79.73175 * 22 6 4 24 24 C 1.38234 * 119.99607 * 179.80848 * 23 22 6 25 25 C 1.38241 * 120.00148 * 0.39350 * 24 23 22 26 26 C 1.38232 * 119.99642 * 359.85768 * 25 24 23 27 27 C 1.38227 * 120.00401 * 359.95767 * 26 25 24 28 28 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 29 29 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 30 30 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 32 32 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 33 33 H 0.96999 * 120.00897 * 324.99894 * 8 6 4 34 34 H 1.08995 * 109.46995 * 299.99565 * 12 9 8 35 35 H 1.09003 * 109.47278 * 60.00326 * 12 9 8 36 36 H 1.08997 * 109.47876 * 299.99947 * 13 12 9 37 37 H 1.09000 * 109.47357 * 59.99910 * 13 12 9 38 38 H 0.96998 * 119.99913 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.99998 * 359.97438 * 23 22 6 40 40 H 1.08005 * 119.99839 * 180.22936 * 24 23 22 41 41 H 1.08001 * 119.99609 * 179.83425 * 25 24 23 42 42 H 1.08002 * 119.99539 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.00195 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5882 3.4684 -0.8920 8 7 5.3836 2.8607 0.0060 9 16 6.2752 3.9895 -0.8146 10 8 7.6229 3.5886 -0.6089 11 8 5.7065 4.0065 -2.1166 12 6 5.9363 5.5486 0.0485 13 6 6.7129 6.6828 -0.6233 14 6 6.4309 7.9781 0.0932 15 1 5.7646 7.9910 0.9432 16 6 7.0233 9.1467 -0.3361 17 7 7.8342 9.1310 -1.3714 18 14 6.6742 10.7523 0.5526 19 1 7.6663 10.9413 1.6412 20 1 6.7719 11.8809 -0.4075 21 1 5.3070 10.7110 1.1306 22 6 3.4513 3.6747 1.2277 23 6 4.0663 3.4513 2.4454 24 6 3.6384 4.1305 3.5707 25 6 2.5900 5.0270 3.4800 26 6 1.9716 5.2464 2.2633 27 6 2.4021 4.5701 1.1373 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.8301 2.1488 0.4904 34 1 4.8686 5.7634 0.0049 35 1 6.2474 5.4627 1.0897 36 1 7.7806 6.4679 -0.5795 37 1 6.4022 6.7689 -1.6646 38 1 8.2513 9.9531 -1.6733 39 1 4.8829 2.7481 2.5170 40 1 4.1213 3.9587 4.5214 41 1 2.2539 5.5556 4.3598 42 1 1.1523 5.9465 2.1925 43 1 1.9187 4.7413 0.1868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193986348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:29 Heat of formation + Delta-G solvation = -139.189130 kcal Electronic energy + Delta-G solvation = -28187.239949 eV Core-core repulsion = 24131.610016 eV Total energy + Delta-G solvation = -4055.629932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96188 -39.28835 -37.12236 -36.66550 -35.55491 -35.30277 -33.90023 -32.09641 -31.24826 -31.09554 -30.79890 -27.25773 -25.60203 -23.66513 -22.75566 -22.26320 -21.64165 -20.97115 -19.19729 -18.18211 -17.69866 -17.20173 -17.06033 -16.69485 -16.26578 -15.73147 -15.42084 -15.23696 -14.98202 -14.54958 -14.34494 -14.32614 -13.66908 -13.50565 -13.37394 -13.13722 -13.04234 -12.78912 -12.50743 -12.20500 -11.91047 -11.82822 -11.75954 -11.68326 -11.60214 -11.49404 -11.17398 -11.08630 -10.97383 -10.88096 -10.80860 -10.44888 -10.39014 -9.97877 -9.62852 -9.12005 -8.99773 -8.90868 -8.50078 -6.12200 -4.17392 0.65117 1.10007 1.32235 1.94384 2.29693 3.02725 3.25964 3.32328 3.34803 3.68777 4.14738 4.30094 4.37772 4.42095 4.58594 4.61856 4.65995 4.67067 4.88888 4.94990 4.95756 5.03934 5.19497 5.23227 5.36058 5.39428 5.45583 5.54111 5.64553 5.65294 5.77649 5.79783 5.93722 6.13997 6.33243 6.39603 6.42493 6.47912 6.85545 6.90710 7.29842 7.35353 7.47864 7.81225 8.17622 8.86074 9.47231 10.98927 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.003755 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.531218 B = 7454.186406 C = 8748.442904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.349 6.349 4 C 0.472 3.528 5 O -0.495 6.495 6 C 0.207 3.793 7 H 0.139 0.861 8 N -1.109 6.109 9 S 2.587 3.413 10 O -0.957 6.957 11 O -0.964 6.964 12 C -0.581 4.581 13 C 0.029 3.971 14 C -0.517 4.517 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.107 4.107 26 C -0.116 4.116 27 C -0.090 4.090 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.421 0.579 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.145 -14.826 8.056 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.265 6.265 4 C 0.312 3.688 5 O -0.381 6.381 6 C 0.097 3.903 7 H 0.156 0.844 8 N -0.865 5.865 9 S 2.686 3.314 10 O -0.948 6.948 11 O -0.953 6.953 12 C -0.715 4.715 13 C -0.010 4.010 14 C -0.556 4.556 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.137 4.137 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.109 4.109 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.257 0.743 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.369 -15.160 7.053 22.711 hybrid contribution -0.172 0.739 1.179 1.402 sum -15.541 -14.421 8.232 22.743 Atomic orbital electron populations 1.21806 0.92403 1.02973 1.03739 1.23080 0.95524 0.79965 1.02718 1.86506 1.23691 1.32552 1.83725 1.23423 0.81042 0.91949 0.72375 1.90668 1.60445 1.42278 1.44728 1.18938 0.81507 0.90548 0.99282 0.84393 1.55903 1.12172 1.46388 1.72033 1.05885 0.73614 0.76714 0.75231 1.93573 1.33620 1.81306 1.86265 1.93546 1.78656 1.86656 1.36488 1.30437 1.10932 1.16966 1.13170 1.18975 0.94884 0.90945 0.96220 1.20976 1.28466 0.91354 1.14832 0.91975 1.25058 0.94947 0.99377 0.95074 1.69955 1.29884 1.28219 1.24833 0.86483 0.78744 0.82748 0.79397 1.20507 1.21047 1.19733 1.19829 0.98525 0.99534 0.94044 1.20967 0.99175 0.99357 0.91884 1.21127 0.97234 0.96962 0.98427 1.21243 0.95897 0.97490 0.97912 1.21133 1.00245 0.99452 0.92530 1.21038 0.95383 0.95006 0.99428 0.91364 0.91269 0.90229 0.91041 0.91166 0.74322 0.86068 0.85827 0.94840 0.94793 0.92546 0.85860 0.85800 0.85930 0.85552 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.35 -3.85 10.13 -39.24 -0.40 -4.24 16 4 C 0.47 6.05 7.30 36.01 0.26 6.32 16 5 O -0.49 -7.33 15.74 -18.75 -0.30 -7.62 16 6 C 0.21 2.63 2.91 -70.24 -0.20 2.42 16 7 H 0.14 1.63 7.34 -51.93 -0.38 1.25 16 8 N -1.11 -15.64 4.46 -6.88 -0.03 -15.67 16 9 S 2.59 46.94 5.44 -107.50 -0.58 46.35 16 10 O -0.96 -20.16 18.08 -57.54 -1.04 -21.20 16 11 O -0.96 -19.87 17.39 -57.54 -1.00 -20.87 16 12 C -0.58 -10.97 5.66 37.16 0.21 -10.76 16 13 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 14 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 18 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 C -0.12 -1.37 4.13 -104.62 -0.43 -1.80 16 23 C -0.10 -1.08 9.32 -39.58 -0.37 -1.45 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 27 C -0.09 -0.97 9.67 -39.59 -0.38 -1.36 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 33 H 0.42 5.42 7.98 -34.47 -0.28 5.14 16 34 H 0.12 2.05 7.75 -51.93 -0.40 1.65 16 35 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 1.27 7.57 -52.49 -0.40 0.87 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.13 1.18 8.04 -52.49 -0.42 0.76 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -35.86 384.57 -9.95 -45.81 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.07 Total: 4.52 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -2.05 Total: -23.31 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.71 Total: -41.20 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -2.73 Total: -53.94 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 46.94 SS G_CDS: -0.58 Total: 46.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.86 -9.95 -45.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.380 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds