Wall clock time and date at job start Sat Apr 11 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46564 * 299.72723 * 6 4 3 8 8 N 1.46493 * 109.47128 * 179.72247 * 6 4 3 9 9 S 1.65605 * 119.99616 * 144.99923 * 8 6 4 10 10 O 1.42100 * 104.27423 * 181.06966 * 9 8 6 11 11 O 1.42097 * 104.27830 * 308.92588 * 9 8 6 12 12 C 1.81401 * 104.44827 * 65.00151 * 9 8 6 13 13 C 1.53000 * 109.46866 * 179.97438 * 12 9 8 14 14 C 1.50699 * 109.47161 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99706 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00448 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99686 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47227 * 89.99844 * 18 16 14 20 20 H 1.48497 * 109.47217 * 209.99914 * 18 16 14 21 21 H 1.48498 * 109.47062 * 329.99854 * 18 16 14 22 22 C 1.50700 * 109.46871 * 59.72047 * 6 4 3 23 23 C 1.38240 * 119.99637 * 79.73175 * 22 6 4 24 24 C 1.38234 * 119.99607 * 179.80848 * 23 22 6 25 25 C 1.38241 * 120.00148 * 0.39350 * 24 23 22 26 26 C 1.38232 * 119.99642 * 359.85768 * 25 24 23 27 27 C 1.38227 * 120.00401 * 359.95767 * 26 25 24 28 28 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 29 29 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 30 30 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 32 32 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 33 33 H 0.96999 * 120.00897 * 324.99894 * 8 6 4 34 34 H 1.08995 * 109.46995 * 299.99565 * 12 9 8 35 35 H 1.09003 * 109.47278 * 60.00326 * 12 9 8 36 36 H 1.08997 * 109.47876 * 299.99947 * 13 12 9 37 37 H 1.09000 * 109.47357 * 59.99910 * 13 12 9 38 38 H 0.96998 * 119.99913 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.99998 * 359.97438 * 23 22 6 40 40 H 1.08005 * 119.99839 * 180.22936 * 24 23 22 41 41 H 1.08001 * 119.99609 * 179.83425 * 25 24 23 42 42 H 1.08002 * 119.99539 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.00195 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5882 3.4684 -0.8920 8 7 5.3836 2.8607 0.0060 9 16 6.2752 3.9895 -0.8146 10 8 7.6229 3.5886 -0.6089 11 8 5.7065 4.0065 -2.1166 12 6 5.9363 5.5486 0.0485 13 6 6.7129 6.6828 -0.6233 14 6 6.4309 7.9781 0.0932 15 1 5.7646 7.9910 0.9432 16 6 7.0233 9.1467 -0.3361 17 7 7.8342 9.1310 -1.3714 18 14 6.6742 10.7523 0.5526 19 1 7.6663 10.9413 1.6412 20 1 6.7719 11.8809 -0.4075 21 1 5.3070 10.7110 1.1306 22 6 3.4513 3.6747 1.2277 23 6 4.0663 3.4513 2.4454 24 6 3.6384 4.1305 3.5707 25 6 2.5900 5.0270 3.4800 26 6 1.9716 5.2464 2.2633 27 6 2.4021 4.5701 1.1373 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.8301 2.1488 0.4904 34 1 4.8686 5.7634 0.0049 35 1 6.2474 5.4627 1.0897 36 1 7.7806 6.4679 -0.5795 37 1 6.4022 6.7689 -1.6646 38 1 8.2513 9.9531 -1.6733 39 1 4.8829 2.7481 2.5170 40 1 4.1213 3.9587 4.5214 41 1 2.2539 5.5556 4.3598 42 1 1.1523 5.9465 2.1925 43 1 1.9187 4.7413 0.1868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193986348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:28 Heat of formation + Delta-G solvation = -163.153337 kcal Electronic energy + Delta-G solvation = -28188.279115 eV Core-core repulsion = 24131.610016 eV Total energy + Delta-G solvation = -4056.669098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.92101 -40.10672 -38.30690 -38.01374 -37.13945 -36.38761 -35.87829 -33.12740 -32.77950 -31.97335 -31.64410 -28.21427 -27.56467 -24.37214 -23.71550 -23.43882 -22.99858 -21.90718 -20.53577 -19.49164 -18.84385 -18.62275 -18.07553 -17.85138 -17.52470 -17.07195 -16.75450 -16.48801 -16.19173 -16.13911 -15.25831 -15.11880 -15.11307 -14.50440 -14.41006 -14.24621 -13.93729 -13.79136 -13.68646 -13.54093 -13.31805 -13.24218 -13.21911 -12.93989 -12.91912 -12.77153 -12.52686 -12.35091 -12.24340 -12.12312 -11.98949 -11.83634 -11.72128 -11.56289 -11.26689 -10.74655 -10.61392 -9.78088 -9.73027 -8.22683 -6.35788 -0.85124 0.28112 0.54099 0.95408 1.29357 1.43537 1.44889 1.56014 1.82356 2.40575 2.69116 2.87164 3.11196 3.14388 3.39001 3.52143 3.71025 3.89255 4.00546 4.06357 4.07024 4.13885 4.20583 4.31108 4.33928 4.35899 4.64741 4.74402 4.76429 4.82120 4.93656 5.02004 5.10557 5.18810 5.29278 5.30389 5.36192 5.57268 5.58646 5.66426 5.71912 5.78948 6.09436 6.10378 6.51897 6.77558 7.34083 8.89702 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.003755 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.531218 B = 7454.186406 C = 8748.442904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.476 3.524 5 O -0.520 6.520 6 C 0.201 3.799 7 H 0.146 0.854 8 N -1.096 6.096 9 S 2.615 3.385 10 O -0.989 6.989 11 O -0.990 6.990 12 C -0.573 4.573 13 C 0.022 3.978 14 C -0.531 4.531 15 H 0.077 0.923 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.255 1.255 22 C -0.128 4.128 23 C -0.110 4.110 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.100 4.100 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.429 0.571 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.006 0.994 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.433 -14.493 9.984 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.262 6.262 4 C 0.318 3.682 5 O -0.409 6.409 6 C 0.092 3.908 7 H 0.163 0.837 8 N -0.855 5.855 9 S 2.713 3.287 10 O -0.979 6.979 11 O -0.979 6.979 12 C -0.706 4.706 13 C -0.017 4.017 14 C -0.570 4.570 15 H 0.095 0.905 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.179 1.179 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.119 4.119 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.266 0.734 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.024 0.976 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.682 -14.834 8.995 24.771 hybrid contribution 0.456 0.539 0.603 0.929 sum -17.225 -14.295 9.598 24.355 Atomic orbital electron populations 1.21825 0.90114 1.04439 1.03866 1.23396 0.97293 0.78745 1.02772 1.86505 1.22474 1.34125 1.83141 1.23389 0.81548 0.91573 0.71729 1.90656 1.61101 1.42996 1.46136 1.19130 0.80143 0.91040 1.00491 0.83692 1.55388 1.13079 1.45431 1.71615 1.04789 0.72790 0.76527 0.74608 1.93525 1.35895 1.81856 1.86646 1.93509 1.79014 1.87116 1.38300 1.30274 1.11411 1.15297 1.13618 1.18833 0.94169 0.93079 0.95595 1.21456 1.28281 0.92178 1.15108 0.90520 1.26073 0.94664 1.03537 0.95819 1.70103 1.31319 1.29308 1.26753 0.85357 0.79408 0.77720 0.78068 1.19853 1.21038 1.17872 1.19764 0.99465 1.00253 0.93558 1.21137 0.99581 0.99877 0.92212 1.21403 0.97463 0.96796 0.98846 1.21586 0.95436 0.97147 0.98727 1.21448 1.00694 0.99528 0.92326 1.21294 0.95244 0.94811 1.00529 0.91160 0.91161 0.88083 0.91195 0.91016 0.73390 0.83783 0.83884 0.97551 0.97158 0.92481 0.85598 0.84120 0.83803 0.83582 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.82 6.19 71.98 0.45 1.27 16 3 O -0.35 -7.27 10.13 -51.34 -0.52 -7.79 16 4 C 0.48 11.88 7.30 71.24 0.52 12.40 16 5 O -0.52 -15.24 15.74 21.95 0.35 -14.90 16 6 C 0.20 4.91 2.91 43.50 0.13 5.04 16 7 H 0.15 3.30 7.34 -2.39 -0.02 3.28 16 8 N -1.10 -30.37 4.46 -175.69 -0.78 -31.15 16 9 S 2.61 95.39 5.44 -56.49 -0.31 95.08 16 10 O -0.99 -42.35 18.08 -127.65 -2.31 -44.66 16 11 O -0.99 -41.25 17.39 -127.65 -2.22 -43.47 16 12 C -0.57 -21.33 5.66 71.98 0.41 -20.92 16 13 C 0.02 1.14 4.98 29.85 0.15 1.29 16 14 C -0.53 -28.69 9.11 25.60 0.23 -28.45 16 15 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 17 N -0.94 -56.25 13.29 21.45 0.28 -55.96 16 18 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 C -0.13 -2.80 4.13 -19.86 -0.08 -2.88 16 23 C -0.11 -2.30 9.32 22.27 0.21 -2.09 16 24 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 25 C -0.11 -1.90 10.05 22.27 0.22 -1.67 16 26 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 27 C -0.10 -1.96 9.67 22.27 0.22 -1.74 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 33 H 0.43 10.88 7.98 -96.75 -0.77 10.11 16 34 H 0.14 4.67 7.75 -2.39 -0.02 4.65 16 35 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.13 2.46 7.57 -2.91 -0.02 2.44 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.14 2.30 8.04 -2.91 -0.02 2.27 16 Total: -1.00 -77.43 384.57 0.86 -76.56 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.25 Total: 23.96 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 4.10 Total: -42.19 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -0.50 Total: -87.11 kcal Atomic # 8 Polarization: -106.12 SS G_CDS: -4.70 Total: -110.82 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 95.39 SS G_CDS: -0.31 Total: 95.08 kcal Total: -77.43 0.86 -76.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.589 kcal (2) G-P(sol) polarization free energy of solvation -77.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds