Wall clock time and date at job start Sat Apr 11 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00126 * 2 1 4 4 O 1.21551 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.47862 * 120.00186 * 179.97438 * 3 2 1 6 6 C 1.39604 * 120.11582 * 359.97438 * 5 3 2 7 7 C 1.37960 * 119.96839 * 180.02562 * 6 5 3 8 8 C 1.38289 * 120.20946 * 359.72021 * 7 6 5 9 9 C 1.38827 * 120.22804 * 0.55485 * 8 7 6 10 10 O 1.35929 * 119.98152 * 179.72370 * 9 8 7 11 11 C 1.34774 * 116.99849 * 255.04667 * 10 9 8 12 12 O 1.21523 * 119.99892 * 355.01669 * 11 10 9 13 13 C 1.47379 * 120.00019 * 175.01424 * 11 10 9 14 14 C 1.39743 * 120.20438 * 0.02562 * 13 11 10 15 15 C 1.37796 * 119.91232 * 180.02562 * 14 13 11 16 16 C 1.38592 * 120.33462 * 359.97438 * 15 14 13 17 17 C 1.38017 * 120.41506 * 359.97438 * 16 15 14 18 18 C 1.38838 * 120.07959 * 0.02562 * 17 16 15 19 19 O 1.35500 * 120.16504 * 179.97438 * 18 17 16 20 20 C 1.34808 * 117.00427 * 5.66765 * 19 18 17 21 21 H 1.08009 * 119.99841 * 354.93717 * 20 19 18 22 22 C 1.38701 * 120.00441 * 174.93614 * 20 19 18 23 23 N 1.31513 * 119.99847 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46937 * 90.00408 * 24 22 20 26 26 H 1.48502 * 109.47207 * 210.00148 * 24 22 20 27 27 H 1.48500 * 109.46862 * 330.00424 * 24 22 20 28 28 C 1.38496 * 120.03463 * 359.44592 * 9 8 7 29 29 H 1.09007 * 109.47291 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46958 * 299.99932 * 1 2 3 32 32 H 0.97004 * 119.99808 * 180.02562 * 2 1 3 33 33 H 1.08007 * 120.01708 * 359.97438 * 6 5 3 34 34 H 1.08004 * 119.90436 * 179.97438 * 7 6 5 35 35 H 1.07991 * 119.88603 * 180.27574 * 8 7 6 36 36 H 1.07996 * 120.03788 * 359.97438 * 14 13 11 37 37 H 1.08003 * 119.82872 * 180.02562 * 15 14 13 38 38 H 1.07997 * 119.78922 * 180.02562 * 16 15 14 39 39 H 1.08005 * 119.96105 * 179.74591 * 17 16 15 40 40 H 0.97006 * 120.00010 * 180.02562 * 23 22 20 41 41 H 1.07998 * 120.10662 * 180.25151 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2198 0.0005 5 6 3.6175 1.1672 0.0006 6 6 4.3180 -0.0404 0.0017 7 6 5.6976 -0.0368 0.0027 8 6 6.3903 1.1600 -0.0031 9 6 5.7023 2.3658 0.0015 10 8 6.3883 3.5393 0.0014 11 6 6.4335 4.2216 1.1628 12 8 5.8016 3.8285 2.1235 13 6 7.2493 5.4446 1.2677 14 6 7.9772 5.9008 0.1655 15 6 8.7384 7.0446 0.2703 16 6 8.7859 7.7467 1.4643 17 6 8.0716 7.3090 2.5612 18 6 7.2991 6.1587 2.4747 19 8 6.5975 5.7271 3.5506 20 6 6.5972 6.5214 4.6398 21 1 7.2056 7.4137 4.6577 22 6 5.8156 6.1929 5.7375 23 7 5.0752 5.1063 5.7160 24 14 5.8157 7.2932 7.2471 25 1 4.7526 8.3211 7.1106 26 1 5.5583 6.4727 8.4578 27 1 7.1363 7.9607 7.3730 28 6 4.3174 2.3737 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7801 -0.9770 0.0025 34 1 6.2384 -0.9717 0.0040 35 1 7.4702 1.1567 -0.0068 36 1 7.9438 5.3570 -0.7670 37 1 9.3001 7.3962 -0.5825 38 1 9.3851 8.6423 1.5366 39 1 8.1172 7.8595 3.4893 40 1 4.5282 4.8767 6.4836 41 1 3.7810 3.3110 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194189853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:31 Heat of formation + Delta-G solvation = -72.865038 kcal Electronic energy + Delta-G solvation = -28422.790063 eV Core-core repulsion = 24234.592207 eV Total energy + Delta-G solvation = -4188.197855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86269 -39.89533 -39.07632 -37.79377 -36.47624 -35.89122 -34.79336 -32.45500 -31.38764 -31.04794 -29.98643 -29.01960 -27.09541 -25.56451 -24.35952 -23.49359 -22.49749 -21.61463 -20.81287 -20.14588 -18.45980 -18.10751 -17.63050 -16.68622 -16.51977 -16.17968 -16.06769 -15.54589 -15.30436 -14.76006 -14.52791 -14.33684 -14.16312 -14.00119 -13.76264 -13.70699 -13.46769 -13.22374 -12.89108 -12.61693 -12.53384 -12.30395 -11.94143 -11.79462 -11.68393 -11.40756 -11.19875 -10.96684 -10.86123 -10.61323 -10.51376 -10.01843 -9.90122 -9.44147 -9.34682 -9.01483 -8.96526 -8.70505 -8.38894 -7.43514 -6.54450 -4.14492 0.73691 1.18327 1.51999 2.26052 2.69725 2.99036 3.07097 3.09151 3.13413 3.25443 3.36510 3.86008 3.91204 4.48245 4.53733 4.71369 4.86298 4.96464 4.99042 5.07709 5.09645 5.23185 5.31903 5.38129 5.51979 5.58401 5.61444 5.74831 5.81467 6.04111 6.07539 6.14503 6.18578 6.21197 6.32087 6.49559 6.56889 6.66758 6.86100 7.00730 7.12289 7.17459 7.23722 7.29226 7.60268 7.83200 8.09638 8.62191 8.84982 9.52625 10.58791 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.003432 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.852383 B = 8156.049448 C =10138.229770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.560 3.440 4 O -0.528 6.528 5 C -0.125 4.125 6 C -0.093 4.093 7 C -0.114 4.114 8 C -0.096 4.096 9 C 0.097 3.903 10 O -0.305 6.305 11 C 0.494 3.506 12 O -0.456 6.456 13 C -0.216 4.216 14 C -0.015 4.015 15 C -0.234 4.234 16 C -0.042 4.042 17 C -0.237 4.237 18 C 0.191 3.809 19 O -0.123 6.123 20 C -0.403 4.403 21 H 0.097 0.903 22 C 0.045 3.955 23 N -0.828 5.828 24 Si 0.944 3.056 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.265 1.265 28 C -0.058 4.058 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.401 0.599 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.274 0.726 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -10.195 -11.836 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.347 3.653 4 O -0.404 6.404 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.132 4.132 8 C -0.114 4.114 9 C 0.056 3.944 10 O -0.223 6.223 11 C 0.340 3.660 12 O -0.339 6.339 13 C -0.219 4.219 14 C -0.033 4.033 15 C -0.253 4.253 16 C -0.060 4.060 17 C -0.256 4.256 18 C 0.131 3.869 19 O -0.021 6.021 20 C -0.479 4.479 21 H 0.115 0.885 22 C -0.163 4.163 23 N -0.459 5.459 24 Si 0.767 3.233 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.189 1.189 28 C -0.078 4.078 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.153 0.847 40 H 0.084 0.916 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.900 -9.920 -11.255 15.029 hybrid contribution 0.194 0.117 0.805 0.836 sum -0.706 -9.803 -10.450 14.345 Atomic orbital electron populations 1.21552 0.79196 1.02187 1.02637 1.45662 1.07858 1.08508 1.76657 1.18268 0.87192 0.83756 0.76038 1.90807 1.69824 1.31118 1.48660 1.19651 0.92605 0.93890 1.06650 1.21227 0.94657 0.96576 0.98727 1.20896 0.93733 0.97718 1.00869 1.21412 1.01061 0.91050 0.97903 1.18388 0.89892 0.85055 1.01113 1.84675 1.68388 1.31317 1.37920 1.21523 0.80887 0.83857 0.79712 1.91053 1.40182 1.66476 1.36181 1.17875 1.10821 0.98543 0.94695 1.20970 0.91944 0.94417 0.95974 1.20540 1.07130 0.99195 0.98418 1.20983 0.95205 0.97374 0.92458 1.21110 1.03960 0.99896 1.00640 1.19197 0.90170 0.90804 0.86720 1.84130 1.57135 1.42603 1.18222 1.21551 1.28332 1.06703 0.91271 0.88523 1.25441 0.94958 0.97039 0.98898 1.70118 1.22986 1.22178 1.30607 0.85682 0.79264 0.79041 0.79284 1.19583 1.20036 1.18922 1.21481 0.93072 0.98864 0.94335 0.92104 0.90589 0.91952 0.76441 0.85461 0.84622 0.84575 0.85676 0.86849 0.86851 0.84726 0.91613 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.70 59.85 0.64 1.41 16 2 N -0.73 -7.61 5.66 -68.04 -0.39 -7.99 16 3 C 0.56 8.52 7.77 -12.32 -0.10 8.42 16 4 O -0.53 -10.27 16.35 5.32 0.09 -10.18 16 5 C -0.12 -1.87 5.87 -104.99 -0.62 -2.48 16 6 C -0.09 -1.03 9.54 -39.17 -0.37 -1.41 16 7 C -0.11 -1.26 10.03 -39.66 -0.40 -1.66 16 8 C -0.10 -1.33 9.98 -39.35 -0.39 -1.73 16 9 C 0.10 1.71 5.19 -39.27 -0.20 1.51 16 10 O -0.31 -5.89 9.27 -24.98 -0.23 -6.12 16 11 C 0.49 11.43 7.75 34.45 0.27 11.70 16 12 O -0.46 -12.54 14.64 -26.60 -0.39 -12.93 16 13 C -0.22 -4.83 5.89 -104.83 -0.62 -5.44 16 14 C -0.01 -0.26 9.61 -39.18 -0.38 -0.64 16 15 C -0.23 -3.84 10.02 -39.61 -0.40 -4.24 16 16 C -0.04 -0.72 10.03 -39.53 -0.40 -1.11 16 17 C -0.24 -4.98 9.16 -39.44 -0.36 -5.34 16 18 C 0.19 4.71 6.66 -38.57 -0.26 4.45 16 19 O -0.12 -3.59 7.84 -20.98 -0.16 -3.76 16 20 C -0.40 -11.22 9.49 30.90 0.29 -10.93 16 21 H 0.10 2.42 5.21 -52.48 -0.27 2.14 16 22 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 23 N -0.83 -24.78 13.67 55.48 0.76 -24.02 16 24 Si 0.94 20.25 29.55 -169.99 -5.02 15.22 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.06 -1.05 9.02 -39.02 -0.35 -1.40 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.76 6.86 -40.82 -0.28 2.48 16 33 H 0.13 0.88 6.40 -52.48 -0.34 0.54 16 34 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 1.92 7.61 -52.49 -0.40 1.52 16 37 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.14 2.76 5.64 -52.48 -0.30 2.46 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.14 2.80 7.65 -52.49 -0.40 2.40 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -37.03 364.83 -7.66 -44.70 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.08 Total: 7.33 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.73 Total: -7.75 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.37 Total: -32.02 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.70 Total: -32.98 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.03 -7.66 -44.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194189853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.167 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds