Wall clock time and date at job start Sat Apr 11 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00126 * 2 1 4 4 O 1.21551 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.47862 * 120.00186 * 179.97438 * 3 2 1 6 6 C 1.39604 * 120.11582 * 359.97438 * 5 3 2 7 7 C 1.37960 * 119.96839 * 180.02562 * 6 5 3 8 8 C 1.38289 * 120.20946 * 359.72021 * 7 6 5 9 9 C 1.38827 * 120.22804 * 0.55485 * 8 7 6 10 10 O 1.35929 * 119.98152 * 179.72370 * 9 8 7 11 11 C 1.34774 * 116.99849 * 255.04667 * 10 9 8 12 12 O 1.21523 * 119.99892 * 355.01669 * 11 10 9 13 13 C 1.47379 * 120.00019 * 175.01424 * 11 10 9 14 14 C 1.39743 * 120.20438 * 0.02562 * 13 11 10 15 15 C 1.37796 * 119.91232 * 180.02562 * 14 13 11 16 16 C 1.38592 * 120.33462 * 359.97438 * 15 14 13 17 17 C 1.38017 * 120.41506 * 359.97438 * 16 15 14 18 18 C 1.38838 * 120.07959 * 0.02562 * 17 16 15 19 19 O 1.35500 * 120.16504 * 179.97438 * 18 17 16 20 20 C 1.34808 * 117.00427 * 5.66765 * 19 18 17 21 21 H 1.08009 * 119.99841 * 354.93717 * 20 19 18 22 22 C 1.38701 * 120.00441 * 174.93614 * 20 19 18 23 23 N 1.31513 * 119.99847 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46937 * 90.00408 * 24 22 20 26 26 H 1.48502 * 109.47207 * 210.00148 * 24 22 20 27 27 H 1.48500 * 109.46862 * 330.00424 * 24 22 20 28 28 C 1.38496 * 120.03463 * 359.44592 * 9 8 7 29 29 H 1.09007 * 109.47291 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47284 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46958 * 299.99932 * 1 2 3 32 32 H 0.97004 * 119.99808 * 180.02562 * 2 1 3 33 33 H 1.08007 * 120.01708 * 359.97438 * 6 5 3 34 34 H 1.08004 * 119.90436 * 179.97438 * 7 6 5 35 35 H 1.07991 * 119.88603 * 180.27574 * 8 7 6 36 36 H 1.07996 * 120.03788 * 359.97438 * 14 13 11 37 37 H 1.08003 * 119.82872 * 180.02562 * 15 14 13 38 38 H 1.07997 * 119.78922 * 180.02562 * 16 15 14 39 39 H 1.08005 * 119.96105 * 179.74591 * 17 16 15 40 40 H 0.97006 * 120.00010 * 180.02562 * 23 22 20 41 41 H 1.07998 * 120.10662 * 180.25151 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2198 0.0005 5 6 3.6175 1.1672 0.0006 6 6 4.3180 -0.0404 0.0017 7 6 5.6976 -0.0368 0.0027 8 6 6.3903 1.1600 -0.0031 9 6 5.7023 2.3658 0.0015 10 8 6.3883 3.5393 0.0014 11 6 6.4335 4.2216 1.1628 12 8 5.8016 3.8285 2.1235 13 6 7.2493 5.4446 1.2677 14 6 7.9772 5.9008 0.1655 15 6 8.7384 7.0446 0.2703 16 6 8.7859 7.7467 1.4643 17 6 8.0716 7.3090 2.5612 18 6 7.2991 6.1587 2.4747 19 8 6.5975 5.7271 3.5506 20 6 6.5972 6.5214 4.6398 21 1 7.2056 7.4137 4.6577 22 6 5.8156 6.1929 5.7375 23 7 5.0752 5.1063 5.7160 24 14 5.8157 7.2932 7.2471 25 1 4.7526 8.3211 7.1106 26 1 5.5583 6.4727 8.4578 27 1 7.1363 7.9607 7.3730 28 6 4.3174 2.3737 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7801 -0.9770 0.0025 34 1 6.2384 -0.9717 0.0040 35 1 7.4702 1.1567 -0.0068 36 1 7.9438 5.3570 -0.7670 37 1 9.3001 7.3962 -0.5825 38 1 9.3851 8.6423 1.5366 39 1 8.1172 7.8595 3.4893 40 1 4.5282 4.8767 6.4836 41 1 3.7810 3.3110 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194189853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:31 Heat of formation + Delta-G solvation = -99.004081 kcal Electronic energy + Delta-G solvation = -28423.923536 eV Core-core repulsion = 24234.592207 eV Total energy + Delta-G solvation = -4189.331329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36010 -41.22420 -40.69997 -39.15115 -38.17310 -37.57053 -35.86911 -34.41463 -32.65412 -32.43903 -31.26726 -30.67916 -28.02932 -27.51381 -25.90126 -24.61610 -23.91661 -23.14429 -22.18879 -21.47387 -19.99323 -19.72364 -19.31674 -18.23415 -17.82332 -17.61880 -17.31277 -16.82817 -16.45650 -16.40258 -16.21589 -15.87606 -15.74741 -15.40272 -15.21451 -15.05176 -14.86050 -14.52872 -14.34842 -14.12899 -13.61167 -13.52014 -13.25641 -13.21280 -13.04691 -12.80231 -12.77208 -12.59100 -12.43099 -12.14677 -12.12010 -11.71491 -11.26579 -11.21623 -10.89243 -10.42294 -10.09746 -9.99143 -9.90686 -9.16613 -8.51821 -6.23531 -0.40784 -0.14477 -0.00797 0.65046 1.30777 1.42747 1.47721 1.50398 1.59176 1.84688 2.09995 2.11663 2.71188 2.78046 3.10023 3.32028 3.53133 3.69139 3.71953 3.93177 3.99519 4.05116 4.20029 4.27319 4.38140 4.44223 4.47647 4.55905 4.64345 4.70021 4.89442 4.91039 5.01547 5.03993 5.08120 5.11688 5.14314 5.25318 5.35033 5.42644 5.54555 5.62577 5.74490 5.89061 6.08355 6.38091 6.85967 6.91522 7.05321 7.66836 8.68194 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.003432 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.852383 B = 8156.049448 C =10138.229770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.709 5.709 3 C 0.551 3.449 4 O -0.587 6.587 5 C -0.141 4.141 6 C -0.068 4.068 7 C -0.097 4.097 8 C -0.095 4.095 9 C 0.052 3.948 10 O -0.293 6.293 11 C 0.494 3.506 12 O -0.513 6.513 13 C -0.237 4.237 14 C -0.012 4.012 15 C -0.202 4.202 16 C -0.023 4.023 17 C -0.255 4.255 18 C 0.158 3.842 19 O -0.188 6.188 20 C -0.428 4.428 21 H 0.114 0.886 22 C -0.021 4.021 23 N -0.904 5.904 24 Si 1.025 2.975 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.242 1.242 28 C -0.092 4.092 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.044 0.956 32 H 0.422 0.578 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.272 0.728 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 -11.479 -14.205 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.362 5.362 3 C 0.339 3.661 4 O -0.469 6.469 5 C -0.144 4.144 6 C -0.086 4.086 7 C -0.115 4.115 8 C -0.113 4.113 9 C 0.011 3.989 10 O -0.209 6.209 11 C 0.342 3.658 12 O -0.401 6.401 13 C -0.240 4.240 14 C -0.030 4.030 15 C -0.220 4.220 16 C -0.041 4.041 17 C -0.274 4.274 18 C 0.103 3.897 19 O -0.090 6.090 20 C -0.504 4.504 21 H 0.131 0.869 22 C -0.220 4.220 23 N -0.539 5.539 24 Si 0.842 3.158 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.165 1.165 28 C -0.111 4.111 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.200 0.800 34 H 0.208 0.792 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.931 -11.237 -13.717 17.837 hybrid contribution -0.503 0.422 1.044 1.233 sum 1.428 -10.815 -12.673 16.722 Atomic orbital electron populations 1.21779 0.77865 1.04985 1.01496 1.45528 1.08721 1.07781 1.74136 1.18513 0.87521 0.84321 0.75721 1.90774 1.70833 1.33492 1.51764 1.19819 0.92767 0.94388 1.07442 1.21836 0.95127 0.96765 0.94904 1.21554 0.93760 0.98446 0.97712 1.21805 1.02315 0.90493 0.96703 1.18820 0.89966 0.85577 1.04533 1.84639 1.68162 1.32343 1.35780 1.21909 0.79833 0.84137 0.79878 1.91024 1.42508 1.68073 1.38465 1.18371 1.11574 0.98415 0.95641 1.21408 0.90866 0.95271 0.95499 1.21237 1.04404 0.96847 0.99482 1.21569 0.93313 0.98263 0.90987 1.21305 1.04594 0.99051 1.02402 1.19969 0.90382 0.92555 0.86823 1.84143 1.60496 1.44575 1.19777 1.22129 1.29060 1.07445 0.91720 0.86865 1.26840 0.94154 0.98569 1.02482 1.70318 1.25994 1.25593 1.31993 0.84529 0.80255 0.76734 0.74248 1.18856 1.19679 1.16540 1.21343 0.93712 0.98776 0.97304 0.92742 0.85681 0.93763 0.73955 0.79997 0.79175 0.82488 0.82598 0.81410 0.81876 0.84912 0.91874 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.70 127.77 1.37 2.70 16 2 N -0.71 -13.70 5.66 -487.46 -2.76 -16.46 16 3 C 0.55 17.52 7.77 86.79 0.67 18.19 16 4 O -0.59 -25.13 16.35 -3.88 -0.06 -25.20 16 5 C -0.14 -4.34 5.87 -20.10 -0.12 -4.46 16 6 C -0.07 -1.30 9.54 22.53 0.21 -1.09 16 7 C -0.10 -1.77 10.03 22.22 0.22 -1.55 16 8 C -0.09 -2.53 9.98 22.42 0.22 -2.31 16 9 C 0.05 1.95 5.19 22.47 0.12 2.06 16 10 O -0.29 -12.00 9.27 -0.62 -0.01 -12.00 16 11 C 0.49 24.72 7.75 70.23 0.54 25.26 16 12 O -0.51 -31.34 14.64 26.76 0.39 -30.95 16 13 C -0.24 -11.00 5.89 -20.00 -0.12 -11.12 16 14 C -0.01 -0.42 9.61 22.53 0.22 -0.20 16 15 C -0.20 -5.59 10.02 22.25 0.22 -5.37 16 16 C -0.02 -0.71 10.03 22.30 0.22 -0.49 16 17 C -0.25 -10.67 9.16 22.36 0.20 -10.46 16 18 C 0.16 8.23 6.66 22.92 0.15 8.38 16 19 O -0.19 -11.96 7.84 1.13 0.01 -11.95 16 20 C -0.43 -25.66 9.49 67.93 0.64 -25.02 16 21 H 0.11 5.98 5.21 -2.91 -0.02 5.97 16 22 C -0.02 -1.22 5.49 84.85 0.47 -0.76 16 23 N -0.90 -59.27 13.67 21.62 0.30 -58.98 16 24 Si 1.02 43.87 29.55 68.60 2.03 45.90 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.24 -9.30 7.11 99.48 0.71 -8.59 16 28 C -0.09 -3.64 9.02 22.63 0.20 -3.43 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.42 4.23 6.86 -92.71 -0.64 3.60 16 33 H 0.18 1.41 6.40 -2.91 -0.02 1.40 16 34 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.16 3.43 8.06 -2.92 -0.02 3.41 16 36 H 0.16 4.30 7.61 -2.91 -0.02 4.28 16 37 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 39 H 0.13 5.51 5.64 -2.91 -0.02 5.50 16 40 H 0.27 16.36 8.31 -92.70 -0.77 15.59 16 41 H 0.10 4.56 7.65 -2.91 -0.02 4.54 16 Total: -1.00 -99.52 364.83 5.83 -93.70 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.47 Total: 25.60 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.46 Total: -9.66 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -2.46 Total: -75.44 kcal Atomic # 8 Polarization: -80.43 SS G_CDS: 0.33 Total: -80.10 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -99.52 5.83 -93.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194189853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.308 kcal (2) G-P(sol) polarization free energy of solvation -99.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds