Wall clock time and date at job start Sat Apr 11 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00004 * 2 1 4 4 C 1.53000 * 109.47425 * 179.97438 * 3 2 1 5 5 S 1.81396 * 109.47374 * 180.02562 * 4 3 2 6 6 O 1.42102 * 110.54247 * 68.37512 * 5 4 3 7 7 O 1.42103 * 110.54259 * 291.62648 * 5 4 3 8 8 C 1.76196 * 104.45213 * 179.97438 * 5 4 3 9 9 C 1.38364 * 119.85499 * 269.72497 * 8 5 4 10 10 C 1.37957 * 120.14261 * 180.27800 * 9 8 5 11 11 C 1.39576 * 119.85603 * 359.97438 * 10 9 8 12 12 C 1.47848 * 120.14267 * 179.97438 * 11 10 9 13 13 O 1.21548 * 119.99951 * 180.02562 * 12 11 10 14 14 N 1.34776 * 119.99893 * 0.02562 * 12 11 10 15 15 C 1.46501 * 119.99686 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47060 * 325.00019 * 15 14 12 17 17 C 1.52999 * 109.47358 * 85.00298 * 15 14 12 18 18 C 1.50696 * 109.46942 * 205.00087 * 15 14 12 19 19 H 1.08005 * 120.00236 * 0.02562 * 18 15 14 20 20 C 1.37883 * 119.99797 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00230 * 0.02562 * 20 18 15 22 22 Si 1.86806 * 119.99625 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47484 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46852 * 120.00558 * 22 20 18 25 25 H 1.48500 * 109.46791 * 239.99784 * 22 20 18 26 26 C 1.39575 * 119.71174 * 0.02562 * 11 10 9 27 27 C 1.37955 * 119.85214 * 0.02562 * 26 11 10 28 28 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47552 * 299.99826 * 1 2 3 30 30 H 1.09006 * 109.47016 * 60.00075 * 1 2 3 31 31 H 1.09003 * 109.46853 * 59.99919 * 3 2 1 32 32 H 1.08997 * 109.47368 * 300.00357 * 3 2 1 33 33 H 1.08994 * 109.46934 * 59.99975 * 4 3 2 34 34 H 1.09003 * 109.46906 * 300.00313 * 4 3 2 35 35 H 1.07993 * 119.92259 * 0.28050 * 9 8 5 36 36 H 1.08000 * 120.06785 * 179.97438 * 10 9 8 37 37 H 0.96994 * 120.00399 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.46996 * 299.99894 * 17 15 14 39 39 H 1.08996 * 109.47143 * 59.99304 * 17 15 14 40 40 H 1.08995 * 109.47123 * 180.02562 * 17 15 14 41 41 H 0.96999 * 120.00333 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.07330 * 179.97438 * 26 11 10 43 43 H 1.08004 * 119.92780 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 16 4.2732 2.8419 0.0014 6 8 4.0275 3.4966 1.2385 7 8 4.0285 3.4972 -1.2355 8 6 6.0108 2.5497 0.0029 9 6 6.6899 2.4410 1.2034 10 6 8.0513 2.2179 1.2115 11 6 8.7435 2.1013 0.0050 12 6 10.2026 1.8628 0.0063 13 8 10.8028 1.7621 -1.0459 14 7 10.8671 1.7570 1.1740 15 6 12.3130 1.5212 1.1752 16 1 12.5771 0.8790 0.3350 17 6 13.0478 2.8570 1.0468 18 6 12.7115 0.8506 2.4645 19 1 11.9626 0.6225 3.2086 20 6 14.0322 0.5274 2.6940 21 7 14.9440 0.8047 1.7878 22 14 14.5260 -0.3045 4.2920 23 1 13.3222 -0.5065 5.1376 24 1 15.1473 -1.6200 3.9938 25 1 15.5013 0.5510 5.0145 26 6 8.0523 2.2119 -1.2025 27 6 6.6911 2.4361 -1.1966 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6440 0.8909 35 1 6.1531 2.5310 2.1361 36 1 8.5803 2.1337 2.1493 37 1 10.3881 1.8369 2.0136 38 1 12.7595 3.3421 0.1142 39 1 12.7836 3.4992 1.8870 40 1 14.1235 2.6815 1.0472 41 1 15.8730 0.5770 1.9491 42 1 8.5821 2.1230 -2.1394 43 1 6.1551 2.5223 -2.1303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194622044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:34 Heat of formation + Delta-G solvation = -123.697193 kcal Electronic energy + Delta-G solvation = -26510.208076 eV Core-core repulsion = 22455.249924 eV Total energy + Delta-G solvation = -4054.958152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98717 -38.50771 -38.14862 -37.48607 -36.32231 -34.97898 -32.75086 -32.50406 -31.60295 -31.21945 -28.83582 -27.08310 -25.35780 -24.71574 -23.73762 -22.96246 -21.28314 -19.79337 -19.29348 -18.55864 -17.82692 -17.12112 -16.99686 -16.24244 -16.21615 -15.92876 -15.53060 -15.37314 -15.05752 -14.76111 -14.45708 -14.30372 -14.10777 -13.81794 -13.59535 -13.02294 -12.85290 -12.75270 -12.50911 -12.46426 -12.35974 -12.29664 -11.98500 -11.79607 -11.43210 -11.39307 -11.16712 -11.04544 -11.03474 -10.84302 -10.38507 -10.31547 -10.31451 -9.51122 -9.36764 -9.26714 -9.12933 -8.64415 -8.08049 -6.19821 -4.29763 -0.43877 0.33070 1.10862 2.42556 2.78305 3.13233 3.19283 3.27183 3.29512 3.59460 3.71804 3.79984 3.89012 4.04224 4.19360 4.29428 4.53482 4.57136 4.64877 4.79552 4.80241 4.91994 5.01985 5.11730 5.13133 5.14569 5.17475 5.25679 5.40897 5.68549 5.82469 5.92324 6.17569 6.47522 6.55748 6.73824 6.86681 7.04530 7.28453 7.43540 7.59718 7.80773 8.05304 8.47228 8.65556 8.90317 9.37648 10.86209 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.002146 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.186995 B =13045.253171 C =13770.340237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.381 6.381 3 C 0.072 3.928 4 C -0.616 4.616 5 S 2.508 3.492 6 O -0.930 6.930 7 O -0.931 6.931 8 C -0.651 4.651 9 C -0.029 4.029 10 C -0.111 4.111 11 C -0.060 4.060 12 C 0.533 3.467 13 O -0.542 6.542 14 N -0.696 5.696 15 C 0.262 3.738 16 H 0.052 0.948 17 C -0.148 4.148 18 C -0.536 4.536 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.882 5.882 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.088 4.088 27 C -0.031 4.031 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.390 0.610 38 H 0.015 0.985 39 H 0.028 0.972 40 H 0.092 0.908 41 H 0.265 0.735 42 H 0.147 0.853 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.646 1.030 -2.339 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C -0.006 4.006 4 C -0.744 4.744 5 S 2.687 3.313 6 O -0.928 6.928 7 O -0.928 6.928 8 C -0.739 4.739 9 C -0.048 4.048 10 C -0.131 4.131 11 C -0.063 4.063 12 C 0.318 3.682 13 O -0.421 6.421 14 N -0.343 5.343 15 C 0.161 3.839 16 H 0.070 0.930 17 C -0.206 4.206 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.137 4.137 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.107 4.107 27 C -0.050 4.050 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.224 0.776 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.165 0.835 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.248 1.547 -3.097 26.475 hybrid contribution 0.578 -0.974 1.305 1.727 sum -25.670 0.573 -1.792 25.739 Atomic orbital electron populations 1.22861 0.80236 1.03427 1.00545 1.87941 1.20288 1.26235 1.95504 1.22085 0.89598 0.86927 1.02024 1.30519 1.05194 1.24994 1.13677 1.05068 0.74803 0.76554 0.74870 1.93592 1.84384 1.70343 1.44436 1.93591 1.84398 1.70325 1.44479 1.30433 1.24734 1.18969 0.99769 1.20875 0.94671 0.92668 0.96619 1.21557 0.94415 0.98998 0.98098 1.20798 0.94965 0.96313 0.94254 1.18228 0.85866 0.78837 0.85297 1.90753 1.68952 1.51122 1.31280 1.46566 1.12119 1.69128 1.06510 1.18860 0.72600 0.93993 0.98447 0.93042 1.22086 1.04550 0.97152 0.96848 1.21213 0.93638 1.40284 1.02286 0.91942 1.24897 0.96231 0.95435 0.97152 1.69902 1.01841 1.46248 1.33906 0.86362 0.78606 0.79135 0.82805 1.19711 1.20830 1.20811 1.21453 0.93678 0.97003 0.98609 1.20918 0.94681 0.92807 0.96595 0.89040 0.93513 0.93530 0.91401 0.91406 0.83573 0.83551 0.83564 0.84151 0.77646 0.96544 0.95307 0.88919 0.92508 0.83513 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -3.04 10.70 -35.23 -0.38 -3.42 16 3 C 0.07 0.47 5.95 37.16 0.22 0.69 16 4 C -0.62 -3.70 6.35 37.16 0.24 -3.46 16 5 S 2.51 21.49 5.16 -107.50 -0.55 20.94 16 6 O -0.93 -10.26 17.10 -57.54 -0.98 -11.25 16 7 O -0.93 -10.31 17.12 -57.54 -0.98 -11.29 16 8 C -0.65 -6.68 5.66 -39.49 -0.22 -6.90 16 9 C -0.03 -0.31 9.45 -39.64 -0.37 -0.69 16 10 C -0.11 -1.38 9.54 -39.19 -0.37 -1.75 16 11 C -0.06 -0.91 5.87 -104.97 -0.62 -1.53 16 12 C 0.53 10.52 7.74 -12.33 -0.10 10.42 16 13 O -0.54 -12.66 16.01 5.32 0.09 -12.58 16 14 N -0.70 -14.09 5.02 -55.88 -0.28 -14.37 16 15 C 0.26 6.52 2.56 -69.08 -0.18 6.34 16 16 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 17 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 18 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -24.36 11.32 55.43 0.63 -23.73 16 22 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 C -0.09 -1.18 9.60 -39.19 -0.38 -1.56 16 27 C -0.03 -0.34 9.45 -39.64 -0.37 -0.71 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.15 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.15 1.19 7.55 -52.49 -0.40 0.79 16 36 H 0.14 1.50 6.41 -52.49 -0.34 1.17 16 37 H 0.39 6.67 6.57 -40.82 -0.27 6.41 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.15 1.96 7.65 -52.49 -0.40 1.56 16 43 H 0.15 1.23 7.56 -52.48 -0.40 0.84 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -35.38 378.47 -8.73 -44.11 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.85 Total: 4.33 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.09 Total: -13.64 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.35 Total: -38.09 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.26 Total: -38.54 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 21.49 SS G_CDS: -0.55 Total: 20.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.38 -8.73 -44.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194622044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.586 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds