Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00006 * 2 1 4 4 C 1.53001 * 109.47423 * 179.97438 * 3 2 1 5 5 S 1.81399 * 109.47504 * 180.02562 * 4 3 2 6 6 O 1.42092 * 110.54351 * 68.37316 * 5 4 3 7 7 O 1.42105 * 110.53757 * 291.62599 * 5 4 3 8 8 C 1.76194 * 104.45070 * 180.02562 * 5 4 3 9 9 C 1.38363 * 119.85449 * 89.99771 * 8 5 4 10 10 C 1.37961 * 120.14192 * 179.97438 * 9 8 5 11 11 C 1.39575 * 119.85509 * 0.02562 * 10 9 8 12 12 C 1.47849 * 120.14139 * 179.97438 * 11 10 9 13 13 O 1.21548 * 119.99961 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99786 * 180.02562 * 12 11 10 15 15 C 1.46493 * 120.00179 * 180.02562 * 14 12 11 16 16 H 1.08998 * 109.47498 * 34.99783 * 15 14 12 17 17 C 1.53003 * 109.47052 * 275.00050 * 15 14 12 18 18 C 1.50703 * 109.47581 * 154.99966 * 15 14 12 19 19 H 1.08000 * 119.99885 * 34.05549 * 18 15 14 20 20 C 1.37885 * 119.99763 * 214.33615 * 18 15 14 21 21 N 1.31510 * 119.99399 * 181.92231 * 20 18 15 22 22 Si 1.86795 * 120.00296 * 1.91999 * 20 18 15 23 23 H 1.48501 * 109.47054 * 85.07776 * 22 20 18 24 24 H 1.48495 * 109.47109 * 205.08127 * 22 20 18 25 25 H 1.48497 * 109.46977 * 325.07981 * 22 20 18 26 26 C 1.39569 * 119.71161 * 0.25206 * 11 10 9 27 27 C 1.37964 * 119.85172 * 359.47114 * 26 11 10 28 28 H 1.09005 * 109.46845 * 60.00188 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47757 * 300.00350 * 1 2 3 31 31 H 1.09001 * 109.47603 * 59.99643 * 3 2 1 32 32 H 1.09000 * 109.47199 * 299.99958 * 3 2 1 33 33 H 1.09002 * 109.46608 * 60.00131 * 4 3 2 34 34 H 1.09000 * 109.47374 * 300.00433 * 4 3 2 35 35 H 1.07997 * 119.92973 * 359.97438 * 9 8 5 36 36 H 1.08004 * 120.06604 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00238 * 359.97438 * 14 12 11 38 38 H 1.09008 * 109.46708 * 303.98605 * 17 15 14 39 39 H 1.08998 * 109.47286 * 63.98898 * 17 15 14 40 40 H 1.09004 * 109.46961 * 183.99288 * 17 15 14 41 41 H 0.97006 * 120.00089 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.07363 * 179.72655 * 26 11 10 43 43 H 1.08004 * 119.92423 * 180.28149 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 16 4.2733 2.8418 0.0014 6 8 4.0275 3.4965 1.2384 7 8 4.0286 3.4971 -1.2356 8 6 6.0108 2.5495 0.0013 9 6 6.6900 2.4357 -1.1987 10 6 8.0506 2.2074 -1.2057 11 6 8.7417 2.0906 0.0013 12 6 10.1997 1.8453 0.0012 13 8 10.7991 1.7453 -1.0515 14 7 10.8641 1.7325 1.1684 15 6 12.3088 1.4900 1.1684 16 1 12.7649 2.0120 0.3272 17 6 12.5739 -0.0115 1.0411 18 6 12.9035 1.9976 2.4567 19 1 12.3355 1.9395 3.3735 20 6 14.1705 2.5416 2.4640 21 7 14.7042 2.9499 3.5944 22 14 15.1288 2.6985 0.8682 23 1 14.7473 3.9599 0.1837 24 1 16.5838 2.7164 1.1644 25 1 14.8170 1.5438 -0.0119 26 6 8.0495 2.2006 1.2082 27 6 6.6899 2.4347 1.2013 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8573 0.6436 -0.8892 34 1 3.8567 0.6439 0.8908 35 1 6.1540 2.5259 -2.1319 36 1 8.5797 2.1191 -2.1431 37 1 10.3858 1.8126 2.0085 38 1 12.0587 -0.5406 1.8429 39 1 12.2066 -0.3650 0.0777 40 1 13.6454 -0.1986 1.1123 41 1 15.5955 3.3329 3.5996 42 1 8.5777 2.1068 2.1456 43 1 6.1539 2.5245 2.1346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194622055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -123.721996 kcal Electronic energy + Delta-G solvation = -26583.733142 eV Core-core repulsion = 22528.773915 eV Total energy + Delta-G solvation = -4054.959227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06587 -38.52296 -38.25673 -37.49891 -36.33403 -35.09041 -32.69626 -32.51875 -31.78096 -31.27941 -29.55068 -27.09773 -25.42243 -24.76980 -23.76465 -22.99819 -21.20332 -19.88822 -19.33058 -18.58921 -17.93785 -17.18981 -17.01071 -16.41996 -16.24023 -16.19804 -15.60124 -15.40302 -15.13932 -14.76804 -14.47042 -14.36535 -14.12887 -13.82936 -13.55185 -13.13401 -12.93708 -12.76182 -12.60432 -12.47640 -12.43092 -12.37233 -12.31103 -11.99975 -11.60447 -11.45976 -11.40781 -11.22182 -11.06348 -10.91574 -10.63636 -10.32851 -9.96464 -9.55926 -9.48825 -9.29702 -9.28044 -8.80784 -8.27359 -6.30384 -4.35396 -0.45816 0.29055 1.07755 2.40827 2.72852 3.10600 3.21202 3.29640 3.35892 3.57105 3.67570 3.70662 3.81459 4.02668 4.17600 4.26115 4.50831 4.55961 4.62345 4.77951 4.78987 4.88029 4.93729 5.05533 5.12088 5.12493 5.16165 5.23046 5.37615 5.65666 5.79293 5.87619 6.11992 6.22933 6.43115 6.46005 6.52672 6.57136 6.81482 7.05611 7.24483 7.40354 7.99024 8.40145 8.65625 8.74049 9.30354 10.81032 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.002132 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.203363 B =13131.422166 C =13171.590557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.381 6.381 3 C 0.072 3.928 4 C -0.616 4.616 5 S 2.508 3.492 6 O -0.929 6.929 7 O -0.930 6.930 8 C -0.650 4.650 9 C -0.031 4.031 10 C -0.087 4.087 11 C -0.062 4.062 12 C 0.534 3.466 13 O -0.546 6.546 14 N -0.691 5.691 15 C 0.230 3.770 16 H 0.052 0.948 17 C -0.149 4.149 18 C -0.534 4.534 19 H 0.080 0.920 20 C 0.082 3.918 21 N -0.886 5.886 22 Si 0.875 3.125 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.260 1.260 26 C -0.109 4.109 27 C -0.029 4.029 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.394 0.606 38 H 0.046 0.954 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.269 0.731 42 H 0.142 0.858 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.859 -4.612 -6.503 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C -0.006 4.006 4 C -0.744 4.744 5 S 2.687 3.313 6 O -0.926 6.926 7 O -0.928 6.928 8 C -0.738 4.738 9 C -0.050 4.050 10 C -0.107 4.107 11 C -0.065 4.065 12 C 0.319 3.681 13 O -0.426 6.426 14 N -0.339 5.339 15 C 0.128 3.872 16 H 0.070 0.930 17 C -0.207 4.207 18 C -0.572 4.572 19 H 0.098 0.902 20 C -0.123 4.123 21 N -0.522 5.522 22 Si 0.701 3.299 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.184 1.184 26 C -0.129 4.129 27 C -0.048 4.048 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.229 0.771 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.160 0.840 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.496 -3.991 -7.118 27.724 hybrid contribution 0.838 -0.365 -0.235 0.943 sum -25.659 -4.356 -7.353 27.044 Atomic orbital electron populations 1.22862 0.80218 1.03426 1.00565 1.87936 1.20303 1.26242 1.95508 1.22083 0.89580 0.86926 1.02052 1.30519 1.05219 1.24996 1.13633 1.05086 0.74783 0.76552 0.74893 1.93595 1.84335 1.70280 1.44423 1.93592 1.84384 1.70298 1.44488 1.30459 1.24815 1.18730 0.99755 1.20917 0.94670 0.92841 0.96617 1.21444 0.93697 0.97025 0.98542 1.20731 0.94722 0.96757 0.94328 1.18326 0.86074 0.78484 0.85235 1.90739 1.68924 1.51658 1.31302 1.46674 1.11393 1.68969 1.06860 1.19198 0.76272 0.93038 0.98685 0.93028 1.22242 1.01259 0.98399 0.98844 1.20968 1.01362 1.41553 0.93270 0.90230 1.24937 0.97289 0.93654 0.96437 1.69870 1.16452 1.39986 1.25881 0.86890 0.79125 0.79913 0.83971 1.19791 1.21056 1.18430 1.21576 0.94443 0.98755 0.98100 1.20892 0.94690 0.92547 0.96671 0.93529 0.89040 0.93492 0.91374 0.91404 0.83606 0.83560 0.83563 0.83559 0.77072 0.93482 0.95138 0.92409 0.92117 0.84013 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.24 16 2 O -0.38 -2.96 10.70 -35.23 -0.38 -3.34 16 3 C 0.07 0.46 5.95 37.16 0.22 0.68 16 4 C -0.62 -3.53 6.35 37.16 0.24 -3.30 16 5 S 2.51 21.11 5.15 -107.50 -0.55 20.56 16 6 O -0.93 -10.23 17.11 -57.54 -0.98 -11.21 16 7 O -0.93 -10.19 17.11 -57.54 -0.98 -11.17 16 8 C -0.65 -6.53 5.66 -39.49 -0.22 -6.75 16 9 C -0.03 -0.34 9.45 -39.64 -0.37 -0.71 16 10 C -0.09 -1.14 9.60 -39.18 -0.38 -1.52 16 11 C -0.06 -0.92 5.87 -104.97 -0.62 -1.53 16 12 C 0.53 10.09 7.74 -12.33 -0.10 10.00 16 13 O -0.55 -12.11 16.01 5.32 0.09 -12.03 16 14 N -0.69 -13.45 5.02 -55.88 -0.28 -13.73 16 15 C 0.23 5.32 2.16 -69.08 -0.15 5.17 16 16 H 0.05 1.31 4.90 -51.93 -0.25 1.05 16 17 C -0.15 -3.15 9.44 37.16 0.35 -2.80 16 18 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 19 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 22 Si 0.87 21.15 26.72 -169.99 -4.54 16.61 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -6.15 6.86 56.52 0.39 -5.76 16 26 C -0.11 -1.33 9.54 -39.19 -0.37 -1.70 16 27 C -0.03 -0.30 9.45 -39.64 -0.37 -0.68 16 28 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.15 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.15 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.15 1.20 7.56 -52.49 -0.40 0.80 16 36 H 0.15 1.87 7.65 -52.48 -0.40 1.47 16 37 H 0.39 6.61 6.63 -40.82 -0.27 6.34 16 38 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.14 1.50 6.41 -52.49 -0.34 1.16 16 43 H 0.15 1.18 7.56 -52.48 -0.40 0.78 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -36.18 377.85 -8.09 -44.26 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.84 Total: 3.18 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.07 Total: -14.01 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.49 Total: -38.55 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -2.26 Total: -37.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.54 Total: 16.61 kcal Atomic # 16 Polarization: 21.11 SS G_CDS: -0.55 Total: 20.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.18 -8.09 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194622055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.459 kcal (2) G-P(sol) polarization free energy of solvation -36.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds