Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47003 * 2 1 4 4 C 1.34709 * 116.99950 * 180.02562 * 3 2 1 5 5 O 1.21472 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.47731 * 120.00008 * 179.97438 * 4 3 2 7 7 C 1.39650 * 120.14927 * 6.75411 * 6 4 3 8 8 C 1.37921 * 119.84480 * 180.27375 * 7 6 4 9 9 C 1.38394 * 120.15185 * 359.74723 * 8 7 6 10 10 C 1.38344 * 120.30059 * 359.97438 * 9 8 7 11 11 C 1.37964 * 120.15211 * 359.97438 * 10 9 8 12 12 S 1.76201 * 120.07480 * 180.02562 * 11 10 9 13 13 O 1.42099 * 106.40349 * 232.91283 * 12 11 10 14 14 O 1.42103 * 106.39937 * 99.99417 * 12 11 10 15 15 N 1.65596 * 107.22019 * 346.45482 * 12 11 10 16 16 C 1.46503 * 120.00259 * 90.57734 * 15 12 11 17 17 C 1.46501 * 119.99928 * 270.30400 * 15 12 11 18 18 H 1.08999 * 109.46800 * 359.97438 * 17 15 12 19 19 C 1.53004 * 109.47446 * 119.99850 * 17 15 12 20 20 C 1.50705 * 109.46953 * 240.00043 * 17 15 12 21 21 H 1.07996 * 119.99854 * 359.97438 * 20 17 15 22 22 C 1.37880 * 119.99765 * 180.02562 * 20 17 15 23 23 N 1.31510 * 119.99894 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 119.99768 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.47419 * 59.99777 * 24 22 20 26 26 H 1.48504 * 109.47118 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47366 * 299.99839 * 24 22 20 28 28 H 1.08995 * 109.47059 * 60.00334 * 1 2 3 29 29 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47216 * 300.00267 * 1 2 3 31 31 H 1.08997 * 109.47216 * 239.99733 * 2 1 3 32 32 H 1.09002 * 109.47116 * 120.00049 * 2 1 3 33 33 H 1.08000 * 120.07936 * 0.02562 * 7 6 4 34 34 H 1.08004 * 119.92810 * 179.76426 * 8 7 6 35 35 H 1.07998 * 119.84664 * 180.02562 * 9 8 7 36 36 H 1.07998 * 119.92142 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.46969 * 94.59044 * 16 15 12 38 38 H 1.08993 * 109.47169 * 214.59320 * 16 15 12 39 39 H 1.09006 * 109.46791 * 334.59400 * 16 15 12 40 40 H 1.09005 * 109.46980 * 59.99783 * 19 17 15 41 41 H 1.08995 * 109.47294 * 179.97438 * 19 17 15 42 42 H 1.09002 * 109.46684 * 300.00516 * 19 17 15 43 43 H 0.97000 * 119.99743 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0005 6 6 3.9141 2.9106 -0.0011 7 6 3.0741 4.0171 0.1409 8 6 3.6073 5.2890 0.1338 9 6 4.9720 5.4699 -0.0084 10 6 5.8105 4.3778 -0.1437 11 6 5.2906 3.0999 -0.1373 12 16 6.3604 1.7105 -0.3091 13 8 5.8389 0.9322 -1.3775 14 8 6.5637 1.1964 1.0000 15 7 7.8282 2.2822 -0.8201 16 6 8.8500 2.6572 0.1605 17 6 8.1071 2.4073 -2.2528 18 1 7.2376 2.0789 -2.8222 19 6 8.4140 3.8684 -2.5871 20 6 9.2940 1.5501 -2.6103 21 1 9.7910 0.9706 -1.8465 22 6 9.7459 1.5067 -3.9122 23 7 9.1408 2.2129 -4.8421 24 14 11.2174 0.4449 -4.3550 25 1 10.9199 -0.9735 -4.0310 26 1 11.5001 0.5715 -5.8074 27 1 12.4020 0.8919 -3.5789 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0089 3.8774 0.2520 34 1 2.9585 6.1459 0.2396 35 1 5.3843 6.4681 -0.0129 36 1 6.8745 4.5261 -0.2547 37 1 9.5212 1.8145 0.3262 38 1 9.4196 3.5070 -0.2153 39 1 8.3692 2.9290 1.1003 40 1 9.2837 4.1965 -2.0176 41 1 8.6220 3.9614 -3.6530 42 1 7.5555 4.4883 -2.3285 43 1 9.4590 2.1826 -5.7579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195222362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -117.506524 kcal Electronic energy + Delta-G solvation = -29021.679777 eV Core-core repulsion = 24966.990073 eV Total energy + Delta-G solvation = -4054.689704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74189 -38.90475 -36.86278 -36.38783 -36.13814 -34.89821 -32.60675 -32.29513 -31.43066 -31.15263 -29.09204 -25.61381 -25.22141 -25.02096 -23.25419 -22.94356 -21.38221 -20.52073 -18.75746 -18.02677 -17.34142 -16.72596 -16.70074 -16.63264 -16.20783 -15.26159 -15.10094 -15.05210 -14.51058 -14.50845 -14.27154 -13.61877 -13.44056 -13.08287 -12.99154 -12.93553 -12.76432 -12.52712 -12.14320 -11.89933 -11.86155 -11.76930 -11.63815 -11.27314 -11.24509 -11.12513 -10.90002 -10.79550 -10.67903 -10.58060 -10.45451 -10.28688 -10.24491 -9.94151 -9.49234 -9.26798 -9.22094 -8.42563 -7.97930 -6.04422 -4.10670 0.32562 0.93235 1.06430 2.37076 2.45148 3.33309 3.37423 3.41362 3.44098 3.72028 4.29925 4.41315 4.44947 4.64326 4.72387 4.79066 4.80679 4.99670 5.11489 5.15988 5.27195 5.37306 5.39639 5.46928 5.59007 5.59888 5.66377 5.75335 5.82850 5.92341 6.09479 6.13539 6.26342 6.37955 6.55951 6.62035 6.74269 6.78108 7.00175 7.44724 7.55265 7.64856 7.80798 8.05770 8.29268 8.91198 9.54773 11.01464 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.004088 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.213565 B = 6848.376893 C = 7723.346709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.348 6.348 4 C 0.493 3.507 5 O -0.474 6.474 6 C -0.037 4.037 7 C -0.081 4.081 8 C -0.092 4.092 9 C -0.102 4.102 10 C -0.039 4.039 11 C -0.612 4.612 12 S 2.693 3.307 13 O -0.931 6.931 14 O -0.964 6.964 15 N -0.988 5.988 16 C 0.101 3.899 17 C 0.265 3.735 18 H 0.062 0.938 19 C -0.153 4.153 20 C -0.518 4.518 21 H 0.063 0.937 22 C 0.064 3.936 23 N -0.891 5.891 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.095 0.905 42 H 0.011 0.989 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 7.165 10.374 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.265 6.265 4 C 0.336 3.664 5 O -0.361 6.361 6 C -0.040 4.040 7 C -0.100 4.100 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.057 4.057 11 C -0.693 4.693 12 S 2.778 3.222 13 O -0.921 6.921 14 O -0.954 6.954 15 N -0.830 5.830 16 C -0.045 4.045 17 C 0.162 3.838 18 H 0.079 0.921 19 C -0.212 4.212 20 C -0.558 4.558 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.030 0.970 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.152 6.058 10.347 18.548 hybrid contribution 0.603 0.141 -0.409 0.742 sum -13.549 6.199 9.938 17.910 Atomic orbital electron populations 1.21810 0.92381 1.03129 1.03457 1.23180 0.95304 0.79545 1.03575 1.86459 1.22652 1.33048 1.84334 1.21247 0.81519 0.89695 0.73920 1.90932 1.59374 1.42167 1.43612 1.18534 0.91965 0.90682 1.02780 1.21517 1.00201 0.91643 0.96595 1.21381 0.95557 0.97043 0.97054 1.21587 0.93771 0.99502 0.97216 1.21077 1.01243 0.90319 0.93076 1.31888 1.08255 1.19642 1.09512 1.02459 0.72363 0.73477 0.73942 1.93576 1.78678 1.64168 1.55659 1.93503 1.85640 1.76054 1.40191 1.57687 1.27060 1.82431 1.15821 1.21279 0.92219 1.01367 0.89675 1.18802 0.98360 0.93819 0.72783 0.92073 1.22198 0.97467 0.96661 1.04893 1.21280 1.13601 1.26742 0.94189 0.91840 1.24898 0.97156 0.95635 0.96148 1.69845 1.40710 1.40604 1.01813 0.86550 0.82546 0.81088 0.77193 1.20107 1.21238 1.20207 0.91357 0.90004 0.91528 0.90336 0.90715 0.83761 0.84460 0.84394 0.83274 0.92573 0.90977 0.92761 0.94483 0.88611 0.97030 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.35 -4.96 9.50 -40.52 -0.38 -5.34 16 4 C 0.49 8.89 7.73 34.61 0.27 9.15 16 5 O -0.47 -10.30 11.64 -29.48 -0.34 -10.64 16 6 C -0.04 -0.62 5.87 -104.98 -0.62 -1.24 16 7 C -0.08 -0.99 9.62 -39.17 -0.38 -1.36 16 8 C -0.09 -0.94 10.03 -39.64 -0.40 -1.33 16 9 C -0.10 -1.14 10.04 -39.48 -0.40 -1.54 16 10 C -0.04 -0.57 9.30 -39.64 -0.37 -0.94 16 11 C -0.61 -11.11 5.86 -39.17 -0.23 -11.34 16 12 S 2.69 60.21 3.97 -107.50 -0.43 59.78 16 13 O -0.93 -24.19 14.03 -67.12 -0.94 -25.13 16 14 O -0.96 -22.66 16.52 -64.08 -1.06 -23.72 16 15 N -0.99 -21.36 2.14 -115.84 -0.25 -21.60 16 16 C 0.10 1.81 9.12 59.85 0.55 2.35 16 17 C 0.26 6.57 2.62 -69.08 -0.18 6.39 16 18 H 0.06 1.70 6.92 -51.93 -0.36 1.34 16 19 C -0.15 -3.37 8.91 37.16 0.33 -3.04 16 20 C -0.52 -14.11 8.37 -34.44 -0.29 -14.40 16 21 H 0.06 1.72 7.49 -52.49 -0.39 1.32 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 24 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.14 1.36 7.63 -52.49 -0.40 0.96 16 34 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 2.05 6.09 -52.49 -0.32 1.73 16 37 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 38 H 0.07 1.17 6.46 -51.93 -0.34 0.83 16 39 H 0.05 0.82 7.61 -51.93 -0.40 0.43 16 40 H 0.04 0.75 6.70 -51.93 -0.35 0.40 16 41 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 42 H 0.01 0.21 7.13 -51.93 -0.37 -0.16 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -35.48 364.43 -9.24 -44.72 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.74 Total: -0.04 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.19 Total: -15.54 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.38 Total: -45.86 kcal Atomic # 8 Polarization: -62.10 SS G_CDS: -2.73 Total: -64.83 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 60.21 SS G_CDS: -0.43 Total: 59.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.48 -9.24 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195222362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.787 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds