Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47132 * 2 1 4 4 C 1.34712 * 117.00028 * 180.02562 * 3 2 1 5 5 O 1.21475 * 119.99755 * 359.97438 * 4 3 2 6 6 C 1.47724 * 119.99866 * 179.97438 * 4 3 2 7 7 C 1.39643 * 120.15015 * 353.66328 * 6 4 3 8 8 C 1.37929 * 119.84835 * 179.97438 * 7 6 4 9 9 C 1.38387 * 120.14800 * 0.02562 * 8 7 6 10 10 C 1.38350 * 120.30552 * 359.97438 * 9 8 7 11 11 C 1.37967 * 120.14867 * 0.02562 * 10 9 8 12 12 S 1.76199 * 120.07489 * 180.02562 * 11 10 9 13 13 O 1.42095 * 106.40331 * 126.21519 * 12 11 10 14 14 O 1.42100 * 106.39753 * 259.13170 * 12 11 10 15 15 N 1.65603 * 107.21913 * 12.67115 * 12 11 10 16 16 C 1.46502 * 119.99698 * 274.70166 * 15 12 11 17 17 C 1.46494 * 119.99913 * 94.70736 * 15 12 11 18 18 H 1.08999 * 109.46965 * 354.92933 * 17 15 12 19 19 C 1.53004 * 109.46788 * 234.93453 * 17 15 12 20 20 C 1.50697 * 109.47398 * 114.93207 * 17 15 12 21 21 H 1.07997 * 119.99893 * 359.97438 * 20 17 15 22 22 C 1.37873 * 119.99951 * 179.97438 * 20 17 15 23 23 N 1.31521 * 120.00227 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 120.00046 * 180.02562 * 22 20 17 25 25 H 1.48498 * 109.47069 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47449 * 119.99697 * 24 22 20 27 27 H 1.48501 * 109.47284 * 239.99981 * 24 22 20 28 28 H 1.09007 * 109.46878 * 299.99417 * 1 2 3 29 29 H 1.08996 * 109.47425 * 59.99979 * 1 2 3 30 30 H 1.09007 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46910 * 239.99808 * 2 1 3 32 32 H 1.08996 * 109.47425 * 120.00021 * 2 1 3 33 33 H 1.08005 * 120.08028 * 359.95895 * 7 6 4 34 34 H 1.07998 * 119.92317 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.84880 * 179.72030 * 9 8 7 36 36 H 1.08002 * 119.92676 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.46752 * 90.00062 * 16 15 12 38 38 H 1.09003 * 109.46558 * 209.99709 * 16 15 12 39 39 H 1.08994 * 109.47414 * 329.99997 * 16 15 12 40 40 H 1.08998 * 109.46955 * 60.00194 * 19 17 15 41 41 H 1.09001 * 109.46688 * 179.97438 * 19 17 15 42 42 H 1.08999 * 109.46944 * 299.99494 * 19 17 15 43 43 H 0.97004 * 119.99997 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5821 -0.0005 6 6 3.9141 2.9106 -0.0011 7 6 3.0731 4.0174 -0.1344 8 6 3.6069 5.2892 -0.1337 9 6 4.9726 5.4697 -0.0017 10 6 5.8115 4.3776 0.1307 11 6 5.2909 3.0999 0.1315 12 16 6.3611 1.7105 0.3010 13 8 5.8578 0.9466 1.3883 14 8 6.5394 1.1798 -1.0050 15 7 7.8391 2.2854 0.7779 16 6 8.8003 2.7547 -0.2232 17 6 8.1854 2.3247 2.2008 18 1 7.3216 2.0237 2.7934 19 6 8.5977 3.7468 2.5863 20 6 9.3298 1.3806 2.4656 21 1 9.7563 0.8083 1.6551 22 6 9.8324 1.2476 3.7425 23 7 9.3135 1.9450 4.7295 24 14 11.2515 0.0780 4.0706 25 1 11.6518 -0.5826 2.8023 26 1 12.4034 0.8385 4.6182 27 1 10.8270 -0.9524 5.0522 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0071 3.8779 -0.2382 34 1 2.9575 6.1460 -0.2363 35 1 5.3858 6.4675 -0.0063 36 1 6.8765 4.5255 0.2329 37 1 8.6477 3.8189 -0.4025 38 1 9.8142 2.5893 0.1412 39 1 8.6541 2.2049 -1.1529 40 1 7.7699 4.4296 2.3948 41 1 8.8550 3.7761 3.6451 42 1 9.4616 4.0478 1.9937 43 1 9.6674 1.8516 5.6279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195222374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = -118.269521 kcal Electronic energy + Delta-G solvation = -28999.870638 eV Core-core repulsion = 24945.147848 eV Total energy + Delta-G solvation = -4054.722790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74793 -38.91110 -36.86382 -36.38042 -36.13401 -34.89093 -32.62166 -32.29663 -31.43493 -31.15664 -29.07419 -25.62191 -25.20983 -25.01013 -23.26046 -22.94850 -21.38146 -20.51483 -18.77576 -18.01524 -17.35168 -16.73575 -16.69608 -16.64307 -16.22990 -15.25169 -15.10131 -15.05884 -14.57092 -14.50563 -14.26764 -13.63782 -13.42465 -13.08938 -12.99574 -12.93912 -12.62671 -12.52724 -12.14105 -11.96459 -11.84052 -11.77301 -11.65753 -11.26683 -11.22803 -11.12218 -10.87285 -10.81374 -10.68336 -10.58721 -10.38582 -10.27823 -10.18843 -9.97581 -9.49931 -9.28836 -9.25737 -8.42102 -7.98487 -6.04381 -4.10679 0.31903 0.92485 1.07171 2.36472 2.44303 3.30655 3.38979 3.43287 3.43739 3.72279 4.29651 4.41113 4.45413 4.63395 4.71067 4.78822 4.80353 4.98943 5.10636 5.15531 5.27356 5.36594 5.40611 5.46226 5.59581 5.62387 5.69778 5.76336 5.82528 5.92999 6.01874 6.10904 6.25173 6.35090 6.55267 6.65329 6.76115 6.81896 7.03601 7.44683 7.54649 7.65383 7.81599 8.06672 8.29166 8.91791 9.54916 11.01389 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.004110 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.034500 B = 6811.284138 C = 7781.905989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.348 6.348 4 C 0.493 3.507 5 O -0.474 6.474 6 C -0.038 4.038 7 C -0.080 4.080 8 C -0.093 4.093 9 C -0.102 4.102 10 C -0.040 4.040 11 C -0.612 4.612 12 S 2.694 3.306 13 O -0.931 6.931 14 O -0.963 6.963 15 N -0.987 5.987 16 C 0.089 3.911 17 C 0.264 3.736 18 H 0.062 0.938 19 C -0.149 4.149 20 C -0.519 4.519 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.890 5.890 24 Si 0.898 3.102 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.283 1.283 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.037 0.963 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.010 0.990 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.308 7.658 -10.128 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.265 6.265 4 C 0.337 3.663 5 O -0.362 6.362 6 C -0.040 4.040 7 C -0.099 4.099 8 C -0.111 4.111 9 C -0.121 4.121 10 C -0.059 4.059 11 C -0.692 4.692 12 S 2.778 3.222 13 O -0.921 6.921 14 O -0.953 6.953 15 N -0.829 5.829 16 C -0.057 4.057 17 C 0.162 3.838 18 H 0.080 0.920 19 C -0.209 4.209 20 C -0.559 4.559 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.209 1.209 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.029 0.971 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.379 6.535 -10.094 18.744 hybrid contribution 0.557 0.122 0.362 0.675 sum -13.822 6.657 -9.732 18.168 Atomic orbital electron populations 1.21811 0.92375 1.03137 1.03454 1.23185 0.95309 0.79527 1.03593 1.86461 1.22635 1.33067 1.84322 1.21246 0.81525 0.89685 0.73876 1.90929 1.59402 1.42148 1.43676 1.18536 0.91973 0.90676 1.02816 1.21521 1.00212 0.91641 0.96552 1.21380 0.95556 0.97049 0.97089 1.21588 0.93775 0.99493 0.97224 1.21107 1.01235 0.90333 0.93194 1.31930 1.08284 1.19655 1.09370 1.02428 0.72355 0.73395 0.73984 1.93572 1.79165 1.64936 1.54407 1.93493 1.85836 1.75452 1.40565 1.57666 1.28447 1.80648 1.16098 1.21426 0.95886 0.97275 0.91107 1.18821 0.97660 0.94192 0.73150 0.92011 1.22154 0.97724 0.96154 1.04834 1.21393 1.16423 1.23764 0.94300 0.91753 1.24902 0.97137 0.95896 0.95916 1.69871 1.41731 1.40774 1.00523 0.86445 0.81794 0.80789 0.78434 1.19646 1.21002 1.20880 0.91366 0.91518 0.89995 0.90693 0.90330 0.83752 0.84458 0.84405 0.83266 0.94410 0.89380 0.91527 0.97115 0.88696 0.94553 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.78 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.35 -4.95 9.49 -40.52 -0.38 -5.33 16 4 C 0.49 8.89 7.74 34.61 0.27 9.16 16 5 O -0.47 -10.32 11.64 -29.56 -0.34 -10.66 16 6 C -0.04 -0.63 5.87 -104.98 -0.62 -1.25 16 7 C -0.08 -0.98 9.62 -39.17 -0.38 -1.36 16 8 C -0.09 -0.93 10.03 -39.64 -0.40 -1.33 16 9 C -0.10 -1.13 10.04 -39.49 -0.40 -1.53 16 10 C -0.04 -0.59 9.56 -39.64 -0.38 -0.97 16 11 C -0.61 -11.09 5.86 -39.17 -0.23 -11.32 16 12 S 2.69 60.36 4.00 -107.50 -0.43 59.93 16 13 O -0.93 -24.25 14.07 -67.06 -0.94 -25.19 16 14 O -0.96 -22.74 16.18 -64.42 -1.04 -23.78 16 15 N -0.99 -21.32 2.23 -115.86 -0.26 -21.58 16 16 C 0.09 1.58 9.20 59.85 0.55 2.13 16 17 C 0.26 6.58 2.60 -69.08 -0.18 6.40 16 18 H 0.06 1.72 6.88 -51.93 -0.36 1.37 16 19 C -0.15 -3.32 8.89 37.16 0.33 -2.99 16 20 C -0.52 -14.17 8.06 -34.44 -0.28 -14.45 16 21 H 0.06 1.75 7.69 -52.49 -0.40 1.35 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 24 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.14 1.35 7.63 -52.48 -0.40 0.95 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.15 2.04 5.56 -52.49 -0.29 1.75 16 37 H 0.04 0.53 6.92 -51.93 -0.36 0.17 16 38 H 0.09 1.59 7.40 -51.93 -0.38 1.21 16 39 H 0.07 1.12 7.06 -51.93 -0.37 0.76 16 40 H 0.01 0.19 7.92 -51.93 -0.41 -0.22 16 41 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 42 H 0.04 0.74 7.55 -51.93 -0.39 0.35 16 43 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -35.56 364.86 -9.26 -44.82 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.78 Total: 0.03 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.19 Total: -15.75 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.37 Total: -45.88 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -2.71 Total: -64.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 60.36 SS G_CDS: -0.43 Total: 59.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.56 -9.26 -44.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195222374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.451 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds