Wall clock time and date at job start Sat Apr 11 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45202 * 109.47121 * 2 1 4 4 C 1.34704 * 117.00119 * 180.02562 * 3 2 1 5 5 O 1.21476 * 120.00224 * 0.02562 * 4 3 2 6 6 C 1.47728 * 120.00018 * 180.02562 * 4 3 2 7 7 C 1.39644 * 120.14971 * 353.49988 * 6 4 3 8 8 C 1.37924 * 119.84603 * 180.32163 * 7 6 4 9 9 C 1.38391 * 120.15050 * 359.70442 * 8 7 6 10 10 C 1.38340 * 120.30313 * 0.02562 * 9 8 7 11 11 C 1.37965 * 120.15032 * 0.02562 * 10 9 8 12 12 S 1.76201 * 120.07600 * 179.97438 * 11 10 9 13 13 O 1.42106 * 106.40353 * 129.26516 * 12 11 10 14 14 O 1.42102 * 106.40299 * 356.34762 * 12 11 10 15 15 N 1.65596 * 107.21819 * 242.80589 * 12 11 10 16 16 C 1.46502 * 119.99875 * 64.80465 * 15 12 11 17 17 C 1.53009 * 109.46760 * 164.25536 * 16 15 12 18 18 C 1.53004 * 109.46951 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46918 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00265 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99590 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00253 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99903 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47376 * 89.99827 * 23 21 19 25 25 H 1.48496 * 109.47092 * 209.99827 * 23 21 19 26 26 H 1.48504 * 109.47320 * 329.99877 * 23 21 19 27 27 H 1.08994 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46873 * 299.99794 * 1 2 3 29 29 H 1.08998 * 109.46826 * 59.99819 * 1 2 3 30 30 H 1.09003 * 109.46873 * 240.00206 * 2 1 3 31 31 H 1.08992 * 109.47217 * 120.00159 * 2 1 3 32 32 H 1.07995 * 120.07819 * 0.02562 * 7 6 4 33 33 H 1.08005 * 119.92566 * 179.72547 * 8 7 6 34 34 H 1.08004 * 119.84423 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.92359 * 180.02562 * 10 9 8 36 36 H 0.96997 * 120.00114 * 245.08400 * 15 12 11 37 37 H 1.08992 * 109.47497 * 284.25564 * 16 15 12 38 38 H 1.09001 * 109.46934 * 44.26113 * 16 15 12 39 39 H 1.09002 * 109.47138 * 300.00112 * 17 16 15 40 40 H 1.08996 * 109.47203 * 60.00198 * 17 16 15 41 41 H 1.09003 * 109.46915 * 300.00405 * 18 17 16 42 42 H 1.09002 * 109.47023 * 59.99583 * 18 17 16 43 43 H 0.97002 * 120.00602 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5822 -0.0015 6 6 3.9141 2.9106 0.0000 7 6 3.0735 4.0174 -0.1356 8 6 3.6080 5.2888 -0.1410 9 6 4.9734 5.4694 -0.0062 10 6 5.8114 4.3776 0.1342 11 6 5.2902 3.1002 0.1401 12 16 6.3593 1.7111 0.3184 13 8 5.8129 0.9153 1.3612 14 8 7.6839 2.2250 0.3456 15 7 6.2339 0.8148 -1.0684 16 6 6.6820 1.3752 -2.3457 17 6 6.8294 0.2503 -3.3724 18 6 7.2980 0.8354 -4.7062 19 6 7.4426 -0.2725 -5.7175 20 1 7.2227 -1.2919 -5.4369 21 6 7.8567 0.0154 -7.0008 22 7 8.1249 1.2567 -7.3424 23 14 8.0366 -1.3578 -8.2542 24 1 6.7517 -1.5410 -8.9758 25 1 9.1035 -1.0052 -9.2250 26 1 8.3976 -2.6191 -7.5584 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.0077 3.8779 -0.2409 33 1 2.9594 6.1455 -0.2503 34 1 5.3867 6.4672 -0.0106 35 1 6.8760 4.5256 0.2393 36 1 5.8600 -0.0796 -1.0357 37 1 5.9490 2.0987 -2.7023 38 1 7.6436 1.8698 -2.2081 39 1 7.5625 -0.4733 -3.0158 40 1 5.8680 -0.2443 -3.5100 41 1 6.5652 1.5592 -5.0629 42 1 8.2596 1.3298 -4.5683 43 1 8.4158 1.4593 -8.2453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195223811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:42 Heat of formation + Delta-G solvation = -133.862882 kcal Electronic energy + Delta-G solvation = -27992.562680 eV Core-core repulsion = 23937.163711 eV Total energy + Delta-G solvation = -4055.398969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96830 -39.14486 -37.35245 -36.59704 -35.73078 -35.59993 -33.15978 -32.49215 -31.71363 -31.35591 -30.74794 -26.29725 -25.33914 -23.51103 -23.15327 -22.91984 -21.45754 -20.46391 -19.29649 -18.56433 -17.81749 -17.07312 -16.85827 -16.80615 -16.39749 -15.92589 -15.40223 -15.08894 -14.71535 -14.65876 -14.45003 -14.38083 -14.10057 -13.72006 -13.23849 -13.07776 -12.73326 -12.42044 -12.31125 -12.21050 -12.10638 -11.98362 -11.90480 -11.84135 -11.68492 -11.41006 -11.01537 -10.92355 -10.80319 -10.68553 -10.66118 -10.51443 -9.86054 -9.79594 -9.49481 -9.40274 -9.13126 -8.97722 -8.34970 -6.00185 -4.02373 0.01063 0.59768 0.72379 2.17805 2.24646 3.09958 3.30677 3.32193 3.38577 3.42469 3.88901 4.08837 4.34528 4.46283 4.46588 4.67209 4.67833 4.68753 4.83665 5.02352 5.07018 5.11964 5.33271 5.35868 5.44134 5.48872 5.49760 5.59785 5.64967 5.69545 5.74764 5.87676 6.07330 6.09533 6.19664 6.31469 6.64797 6.86557 7.04157 7.26088 7.57171 7.66222 7.79751 7.99309 8.41774 9.04269 9.61606 11.11199 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.003289 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.414719 B = 8512.219169 C = 9440.787464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.347 6.347 4 C 0.497 3.503 5 O -0.475 6.475 6 C -0.031 4.031 7 C -0.082 4.082 8 C -0.082 4.082 9 C -0.105 4.105 10 C -0.031 4.031 11 C -0.624 4.624 12 S 2.703 3.297 13 O -0.949 6.949 14 O -0.966 6.966 15 N -1.096 6.096 16 C 0.112 3.888 17 C -0.114 4.114 18 C 0.021 3.979 19 C -0.520 4.520 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.423 0.577 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.020 0.980 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.050 7.469 17.719 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.264 6.264 4 C 0.341 3.659 5 O -0.363 6.363 6 C -0.033 4.033 7 C -0.101 4.101 8 C -0.101 4.101 9 C -0.124 4.124 10 C -0.050 4.050 11 C -0.707 4.707 12 S 2.788 3.212 13 O -0.939 6.939 14 O -0.956 6.956 15 N -0.859 5.859 16 C -0.013 4.013 17 C -0.153 4.153 18 C -0.016 4.016 19 C -0.558 4.558 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.235 7.275 18.284 24.287 hybrid contribution -0.671 -0.605 -1.231 1.527 sum -14.906 6.670 17.053 23.611 Atomic orbital electron populations 1.21820 0.92397 1.03235 1.03487 1.23185 0.95367 0.79248 1.03521 1.86471 1.22613 1.33282 1.84053 1.21101 0.81554 0.89473 0.73821 1.90816 1.59299 1.42323 1.43847 1.18603 0.92034 0.90906 1.01753 1.21582 1.00522 0.91655 0.96308 1.21482 0.95639 0.97272 0.95661 1.21626 0.93725 0.99668 0.97342 1.21077 1.01405 0.90211 0.92287 1.31482 1.07914 1.18650 1.12643 1.01767 0.73188 0.72947 0.73270 1.93590 1.79501 1.66707 1.54140 1.93579 1.34493 1.80932 1.86565 1.55423 1.78881 1.28641 1.22994 1.21557 0.98980 0.97939 0.82862 1.21823 1.01092 0.96333 0.96051 1.19081 0.96662 0.96389 0.89513 1.21229 1.45059 0.93988 0.95563 0.92618 1.25018 0.95461 0.95463 0.98510 1.69959 1.46239 1.17945 1.19329 0.86587 0.77720 0.82404 0.81239 1.20736 1.21228 1.19860 0.89935 0.91518 0.91355 0.90421 0.90518 0.83613 0.84238 0.84140 0.82786 0.73922 0.92814 0.90638 0.92345 0.92745 0.96443 0.96157 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.56 6.20 37.16 0.23 0.79 16 3 O -0.35 -3.91 9.49 -40.50 -0.38 -4.29 16 4 C 0.50 6.72 7.71 34.61 0.27 6.99 16 5 O -0.48 -7.33 9.60 -27.43 -0.26 -7.59 16 6 C -0.03 -0.39 5.87 -104.98 -0.62 -1.00 16 7 C -0.08 -0.77 9.62 -39.17 -0.38 -1.15 16 8 C -0.08 -0.63 10.03 -39.64 -0.40 -1.03 16 9 C -0.10 -0.88 10.04 -39.49 -0.40 -1.27 16 10 C -0.03 -0.34 9.54 -39.64 -0.38 -0.72 16 11 C -0.62 -8.37 5.90 -39.17 -0.23 -8.60 16 12 S 2.70 43.05 4.91 -107.50 -0.53 42.53 16 13 O -0.95 -17.04 15.30 -67.20 -1.03 -18.07 16 14 O -0.97 -17.07 16.44 -57.17 -0.94 -18.01 16 15 N -1.10 -17.57 4.76 -10.61 -0.05 -17.62 16 16 C 0.11 1.96 6.23 -4.04 -0.03 1.94 16 17 C -0.11 -2.33 5.30 -26.72 -0.14 -2.47 16 18 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 19 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 23 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.15 1.06 7.63 -52.49 -0.40 0.66 16 33 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.15 1.56 7.34 -52.49 -0.39 1.18 16 36 H 0.42 6.55 7.36 -34.47 -0.25 6.29 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -35.53 374.55 -10.12 -45.65 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.06 Total: 1.35 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -2.23 Total: -20.17 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.69 Total: -43.66 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.62 Total: -47.96 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 43.05 SS G_CDS: -0.53 Total: 42.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.53 -10.12 -45.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195223811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.213 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds