Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47032 * 119.99535 * 2 1 3 5 5 C 1.53003 * 109.47044 * 295.00177 * 4 2 1 6 6 C 1.52999 * 109.47044 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47434 * 180.02562 * 6 5 4 8 8 S 1.65598 * 120.00089 * 165.00047 * 7 6 5 9 9 O 1.42105 * 106.40000 * 178.53758 * 8 7 6 10 10 O 1.42096 * 106.40340 * 311.45513 * 8 7 6 11 11 C 1.76193 * 107.21933 * 64.99964 * 8 7 6 12 12 C 1.38643 * 119.74817 * 269.72574 * 11 8 7 13 13 C 1.37619 * 120.24545 * 179.71892 * 12 11 8 14 14 C 1.40716 * 119.74894 * 0.57662 * 13 12 11 15 15 C 1.41394 * 120.24482 * 179.68040 * 14 13 12 16 16 H 1.07997 * 119.99603 * 204.40427 * 15 14 13 17 17 C 1.39939 * 120.00336 * 24.40303 * 15 14 13 18 18 N 1.30831 * 119.99586 * 17.84778 * 17 15 14 19 19 Si 1.86792 * 120.00453 * 197.84637 * 17 15 14 20 20 H 1.48500 * 109.46943 * 59.99827 * 19 17 15 21 21 H 1.48498 * 109.47462 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47013 * 300.00399 * 19 17 15 23 23 C 1.40715 * 119.50829 * 359.69718 * 14 13 12 24 24 C 1.37623 * 119.74454 * 0.02562 * 23 14 13 25 25 C 1.50700 * 109.47264 * 240.00080 * 2 1 3 26 26 O 1.20827 * 119.99184 * 239.99606 * 25 2 1 27 27 O 1.34223 * 120.00526 * 60.00030 * 25 2 1 28 28 H 1.08996 * 109.47629 * 300.00455 * 1 2 3 29 29 H 1.09005 * 109.47293 * 60.00318 * 1 2 3 30 30 H 1.09003 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46635 * 55.00276 * 4 2 1 32 32 H 1.08998 * 109.47011 * 175.00687 * 4 2 1 33 33 H 1.08991 * 109.47545 * 299.99939 * 5 4 2 34 34 H 1.08998 * 109.46800 * 60.00381 * 5 4 2 35 35 H 1.09005 * 109.47039 * 300.00197 * 6 5 4 36 36 H 1.08998 * 109.47256 * 59.99581 * 6 5 4 37 37 H 0.97002 * 119.99602 * 344.99946 * 7 6 5 38 38 H 1.08001 * 119.87285 * 359.97438 * 12 11 8 39 39 H 1.07999 * 120.12356 * 180.27561 * 13 12 11 40 40 H 0.97006 * 119.99571 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.12963 * 179.97438 * 23 14 13 42 42 H 1.08003 * 119.87161 * 179.97438 * 24 23 14 43 43 H 0.96692 * 117.00639 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6351 0.0691 2.4953 6 6 2.1446 -0.6523 3.7446 7 7 1.7564 0.1040 4.9378 8 16 1.8389 -0.6062 6.4315 9 8 1.4356 0.3828 7.3688 10 8 1.1995 -1.8695 6.3110 11 6 3.5382 -0.9377 6.7583 12 6 4.0867 -2.1541 6.3816 13 6 5.4142 -2.4215 6.6266 14 6 6.2125 -1.4598 7.2730 15 6 7.5759 -1.7262 7.5360 16 1 8.0814 -1.2114 8.3397 17 6 8.2704 -2.6569 6.7551 18 7 7.7948 -3.0187 5.5912 19 14 9.8762 -3.3828 7.3744 20 1 9.6358 -4.0966 8.6542 21 1 10.4087 -4.3368 6.3686 22 1 10.8604 -2.2926 7.5931 23 6 5.6437 -0.2310 7.6560 24 6 4.3153 0.0171 7.3956 25 6 2.0324 -0.7104 -1.2305 26 8 2.7271 -1.6927 -1.1194 27 8 1.7082 -0.2519 -2.4496 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7993 1.2057 33 1 2.0697 1.0676 2.4494 34 1 0.5488 0.1473 2.5389 35 1 1.7096 -1.6508 3.7904 36 1 3.2308 -0.7310 3.7013 37 1 1.4512 1.0208 4.8528 38 1 3.4708 -2.8928 5.8902 39 1 5.8405 -3.3679 6.3283 40 1 8.2764 -3.6636 5.0497 41 1 6.2470 0.5142 8.1530 42 1 3.8765 0.9594 7.6891 43 1 2.0536 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229514820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -178.964007 kcal Electronic energy + Delta-G solvation = -26883.037507 eV Core-core repulsion = 22825.682806 eV Total energy + Delta-G solvation = -4057.354700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63627 -37.56984 -37.15102 -36.47515 -36.22577 -35.11563 -34.54596 -34.03134 -30.39419 -30.24955 -29.45745 -26.25288 -25.81230 -24.55641 -21.97996 -21.46285 -21.11710 -20.33678 -18.79560 -18.25409 -17.60920 -17.15265 -16.88667 -16.44825 -16.20679 -15.76293 -15.50223 -15.26417 -14.50178 -14.12583 -13.98089 -13.91189 -13.37498 -13.23078 -13.07371 -12.71020 -12.46788 -12.35476 -12.18296 -11.93072 -11.84365 -11.76312 -11.68212 -11.45048 -11.36582 -11.28495 -11.25540 -11.21787 -10.93330 -10.89486 -10.81816 -10.60183 -10.42397 -9.75637 -9.63129 -9.49474 -9.01197 -7.95596 -7.69689 -7.13988 -4.79804 1.27941 1.96010 2.26425 2.74337 2.88264 2.90070 2.92808 2.95539 3.66617 3.75570 4.23857 4.33893 4.53639 4.55456 4.68712 4.94348 5.00942 5.10768 5.21533 5.30565 5.38691 5.43363 5.51349 5.60376 5.70312 5.78923 5.89749 6.04303 6.07921 6.13257 6.15536 6.23267 6.32570 6.68534 6.71379 6.91984 7.05652 7.31469 7.35720 7.43482 7.62859 7.64362 7.77468 7.97434 8.32283 8.51728 8.65662 9.77340 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.003029 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.279013 B = 9242.532294 C =11727.975036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 H 0.110 0.890 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.119 3.881 7 N -1.127 6.127 8 S 2.695 3.305 9 O -0.988 6.988 10 O -0.985 6.985 11 C -0.788 4.788 12 C -0.017 4.017 13 C -0.183 4.183 14 C 0.139 3.861 15 C -0.435 4.435 16 H 0.087 0.913 17 C 0.072 3.928 18 N -0.765 5.765 19 Si 0.918 3.082 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.240 4.240 24 C 0.002 3.998 25 C 0.479 3.521 26 O -0.510 6.510 27 O -0.519 6.519 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.290 0.710 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 5.310 -12.851 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 H 0.128 0.872 4 C -0.147 4.147 5 C -0.163 4.163 6 C -0.007 4.007 7 N -0.883 5.883 8 S 2.793 3.207 9 O -0.978 6.978 10 O -0.975 6.975 11 C -0.884 4.884 12 C -0.037 4.037 13 C -0.203 4.203 14 C 0.136 3.864 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.387 5.387 19 Si 0.741 3.259 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.261 4.261 24 C -0.018 4.018 25 C 0.321 3.679 26 O -0.397 6.397 27 O -0.331 6.331 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.187 4.726 -12.169 15.963 hybrid contribution 1.754 -0.255 -0.653 1.889 sum -7.432 4.472 -12.822 15.480 Atomic orbital electron populations 1.21852 0.91921 1.03198 1.03529 1.21060 0.98365 1.01081 0.89513 0.87160 1.21501 1.02752 0.99474 0.91009 1.21811 1.01835 0.99628 0.93075 1.21186 1.00449 0.95250 0.83808 1.55715 1.83677 1.25625 1.23319 1.01166 0.75210 0.72666 0.71630 1.93488 1.83274 1.61106 1.59968 1.93480 1.75150 1.42790 1.86083 1.29148 1.23294 1.06225 1.29728 1.20269 0.95254 0.93236 0.94954 1.21338 0.92226 1.00441 1.06290 1.17849 0.92763 0.89538 0.86281 1.19911 0.95144 1.18005 1.13202 0.89488 1.26132 1.00558 0.94642 0.93675 1.69810 1.37913 1.23478 1.07523 0.86193 0.80236 0.79538 0.79965 1.18360 1.19884 1.18581 1.21049 0.95041 0.98051 1.11923 1.20158 0.93574 0.95458 0.92579 1.23630 0.76879 0.82591 0.84772 1.90760 1.35588 1.26120 1.87216 1.84528 1.72434 1.59134 1.16998 0.90430 0.91403 0.91915 0.90406 0.90099 0.90976 0.90802 0.90473 0.91146 0.75898 0.87882 0.85973 0.89905 0.88230 0.87815 0.73291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.88 37.16 0.33 -0.62 16 2 C -0.08 -0.64 2.83 -91.77 -0.26 -0.90 16 3 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.05 4.03 -26.73 -0.11 -1.16 16 5 C -0.12 -1.17 5.11 -26.73 -0.14 -1.31 16 6 C 0.12 1.57 6.22 -4.04 -0.03 1.55 16 7 N -1.13 -16.09 6.00 -10.61 -0.06 -16.16 16 8 S 2.69 51.05 5.73 -107.50 -0.62 50.43 16 9 O -0.99 -20.58 17.26 -57.17 -0.99 -21.57 16 10 O -0.98 -20.85 16.72 -57.17 -0.96 -21.81 16 11 C -0.79 -17.22 5.97 -39.29 -0.23 -17.46 16 12 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 13 C -0.18 -4.56 8.70 -38.87 -0.34 -4.90 16 14 C 0.14 3.53 5.57 -106.83 -0.60 2.93 16 15 C -0.44 -10.67 9.05 -37.75 -0.34 -11.02 16 16 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 18 N -0.76 -18.12 10.95 55.55 0.61 -17.52 16 19 Si 0.92 17.06 29.59 -169.99 -5.03 12.03 16 20 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 23 C -0.24 -5.68 9.80 -38.87 -0.38 -6.06 16 24 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 25 C 0.48 4.62 7.63 36.01 0.27 4.89 16 26 O -0.51 -6.82 16.68 -18.75 -0.31 -7.14 16 27 O -0.52 -3.67 13.33 -39.24 -0.52 -4.19 16 28 H 0.08 0.43 6.56 -51.93 -0.34 0.09 16 29 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 35 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 4.71 8.65 -34.47 -0.30 4.41 16 38 H 0.10 2.20 7.59 -52.49 -0.40 1.80 16 39 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 40 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 42 H 0.10 2.08 7.60 -52.48 -0.40 1.68 16 43 H 0.41 1.34 9.10 45.56 0.41 1.75 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -32.83 376.52 -9.87 -42.70 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.01 Total: 11.08 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: -2.66 Total: -33.55 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.54 Total: -33.67 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -2.78 Total: -54.70 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 51.05 SS G_CDS: -0.62 Total: 50.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.83 -9.87 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229514820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.261 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds