Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46830 * 2 1 4 4 C 1.52999 * 109.47032 * 119.99535 * 2 1 3 5 5 C 1.53003 * 109.47044 * 295.00177 * 4 2 1 6 6 C 1.52999 * 109.47044 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47434 * 180.02562 * 6 5 4 8 8 S 1.65598 * 120.00089 * 165.00047 * 7 6 5 9 9 O 1.42105 * 106.40000 * 178.53758 * 8 7 6 10 10 O 1.42096 * 106.40340 * 311.45513 * 8 7 6 11 11 C 1.76193 * 107.21933 * 64.99964 * 8 7 6 12 12 C 1.38643 * 119.74817 * 269.72574 * 11 8 7 13 13 C 1.37619 * 120.24545 * 179.71892 * 12 11 8 14 14 C 1.40716 * 119.74894 * 0.57662 * 13 12 11 15 15 C 1.41394 * 120.24482 * 179.68040 * 14 13 12 16 16 H 1.07997 * 119.99603 * 204.40427 * 15 14 13 17 17 C 1.39939 * 120.00336 * 24.40303 * 15 14 13 18 18 N 1.30831 * 119.99586 * 17.84778 * 17 15 14 19 19 Si 1.86792 * 120.00453 * 197.84637 * 17 15 14 20 20 H 1.48500 * 109.46943 * 59.99827 * 19 17 15 21 21 H 1.48498 * 109.47462 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47013 * 300.00399 * 19 17 15 23 23 C 1.40715 * 119.50829 * 359.69718 * 14 13 12 24 24 C 1.37623 * 119.74454 * 0.02562 * 23 14 13 25 25 C 1.50700 * 109.47264 * 240.00080 * 2 1 3 26 26 O 1.20827 * 119.99184 * 239.99606 * 25 2 1 27 27 O 1.34223 * 120.00526 * 60.00030 * 25 2 1 28 28 H 1.08996 * 109.47629 * 300.00455 * 1 2 3 29 29 H 1.09005 * 109.47293 * 60.00318 * 1 2 3 30 30 H 1.09003 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46635 * 55.00276 * 4 2 1 32 32 H 1.08998 * 109.47011 * 175.00687 * 4 2 1 33 33 H 1.08991 * 109.47545 * 299.99939 * 5 4 2 34 34 H 1.08998 * 109.46800 * 60.00381 * 5 4 2 35 35 H 1.09005 * 109.47039 * 300.00197 * 6 5 4 36 36 H 1.08998 * 109.47256 * 59.99581 * 6 5 4 37 37 H 0.97002 * 119.99602 * 344.99946 * 7 6 5 38 38 H 1.08001 * 119.87285 * 359.97438 * 12 11 8 39 39 H 1.07999 * 120.12356 * 180.27561 * 13 12 11 40 40 H 0.97006 * 119.99571 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.12963 * 179.97438 * 23 14 13 42 42 H 1.08003 * 119.87161 * 179.97438 * 24 23 14 43 43 H 0.96692 * 117.00639 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6351 0.0691 2.4953 6 6 2.1446 -0.6523 3.7446 7 7 1.7564 0.1040 4.9378 8 16 1.8389 -0.6062 6.4315 9 8 1.4356 0.3828 7.3688 10 8 1.1995 -1.8695 6.3110 11 6 3.5382 -0.9377 6.7583 12 6 4.0867 -2.1541 6.3816 13 6 5.4142 -2.4215 6.6266 14 6 6.2125 -1.4598 7.2730 15 6 7.5759 -1.7262 7.5360 16 1 8.0814 -1.2114 8.3397 17 6 8.2704 -2.6569 6.7551 18 7 7.7948 -3.0187 5.5912 19 14 9.8762 -3.3828 7.3744 20 1 9.6358 -4.0966 8.6542 21 1 10.4087 -4.3368 6.3686 22 1 10.8604 -2.2926 7.5931 23 6 5.6437 -0.2310 7.6560 24 6 4.3153 0.0171 7.3956 25 6 2.0324 -0.7104 -1.2305 26 8 2.7271 -1.6927 -1.1194 27 8 1.7082 -0.2519 -2.4496 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7993 1.2057 33 1 2.0697 1.0676 2.4494 34 1 0.5488 0.1473 2.5389 35 1 1.7096 -1.6508 3.7904 36 1 3.2308 -0.7310 3.7013 37 1 1.4512 1.0208 4.8528 38 1 3.4708 -2.8928 5.8902 39 1 5.8405 -3.3679 6.3283 40 1 8.2764 -3.6636 5.0497 41 1 6.2470 0.5142 8.1530 42 1 3.8765 0.9594 7.6891 43 1 2.0536 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229514820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -202.003703 kcal Electronic energy + Delta-G solvation = -26884.036583 eV Core-core repulsion = 22825.682806 eV Total energy + Delta-G solvation = -4058.353777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37509 -39.37587 -38.20873 -37.84470 -37.03715 -36.76240 -35.80591 -35.50317 -32.06211 -31.29386 -31.24691 -27.61560 -26.95594 -25.41039 -23.33356 -22.96654 -22.73453 -21.07005 -20.22707 -19.41722 -19.00235 -18.57282 -18.18383 -17.56340 -17.26081 -17.14351 -16.75092 -16.21226 -15.89449 -15.78350 -15.19802 -14.94190 -14.75675 -14.60941 -14.11135 -13.98054 -13.84683 -13.64983 -13.53463 -13.38448 -13.09939 -13.00460 -12.90492 -12.87877 -12.63898 -12.58201 -12.53352 -12.39997 -12.29085 -12.01478 -11.78020 -11.61670 -11.53803 -11.38991 -11.28433 -11.21495 -10.32138 -9.78641 -9.54568 -8.87238 -6.64928 -0.26769 0.49274 1.06106 1.22878 1.35037 1.43966 1.49265 2.10668 2.12107 2.30690 2.54436 2.96280 3.53231 3.56965 3.69843 3.91397 4.06617 4.15764 4.23400 4.31434 4.33166 4.41081 4.60159 4.67690 4.79302 4.79857 4.87078 4.93753 4.99468 5.02230 5.09830 5.15523 5.22279 5.24623 5.38115 5.47392 5.52682 5.59998 5.64554 5.76855 5.93280 6.15622 6.27732 6.49190 6.68363 6.81384 7.00753 8.07386 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.003029 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.279013 B = 9242.532294 C =11727.975036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.133 0.867 4 C -0.108 4.108 5 C -0.114 4.114 6 C 0.111 3.889 7 N -1.107 6.107 8 S 2.728 3.272 9 O -1.001 7.001 10 O -1.004 7.004 11 C -0.798 4.798 12 C -0.021 4.021 13 C -0.208 4.208 14 C 0.111 3.889 15 C -0.467 4.467 16 H 0.091 0.909 17 C 0.035 3.965 18 N -0.795 5.795 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.254 1.254 23 C -0.259 4.259 24 C -0.001 4.001 25 C 0.482 3.518 26 O -0.557 6.557 27 O -0.511 6.511 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.426 0.574 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.298 0.702 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.456 6.745 -13.689 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 H 0.151 0.849 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.016 4.016 7 N -0.869 5.869 8 S 2.823 3.177 9 O -0.992 6.992 10 O -0.994 6.994 11 C -0.891 4.891 12 C -0.040 4.040 13 C -0.229 4.229 14 C 0.107 3.893 15 C -0.494 4.494 16 H 0.109 0.891 17 C -0.185 4.185 18 N -0.418 5.418 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.188 1.188 22 H -0.178 1.178 23 C -0.279 4.279 24 C -0.021 4.021 25 C 0.326 3.674 26 O -0.448 6.448 27 O -0.324 6.324 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.263 0.737 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -10.067 6.190 -13.017 17.581 hybrid contribution 1.888 -0.645 -0.512 2.060 sum -8.179 5.544 -13.529 16.753 Atomic orbital electron populations 1.21863 0.90401 1.03122 1.04777 1.21099 0.99439 1.01506 0.87675 0.84926 1.21429 1.01491 0.99410 0.92339 1.21767 1.03189 0.99790 0.90534 1.21367 0.99766 0.95578 0.84849 1.55219 1.83102 1.26638 1.21908 1.00214 0.73361 0.72045 0.72117 1.93464 1.82906 1.61265 1.61541 1.93457 1.74878 1.44392 1.86721 1.29695 1.25127 1.05528 1.28704 1.20454 0.94823 0.94139 0.94631 1.21357 0.93261 1.00345 1.07905 1.18201 0.93642 0.90352 0.87085 1.20198 0.95354 1.19695 1.14130 0.89061 1.26996 1.03870 0.94275 0.93350 1.69848 1.39518 1.23926 1.08499 0.85109 0.75805 0.78830 0.79287 1.18333 1.18835 1.17767 1.21290 0.96096 0.97968 1.12555 1.20469 0.93233 0.96453 0.91947 1.23999 0.75771 0.81779 0.85826 1.90751 1.37860 1.28271 1.87901 1.84490 1.71962 1.58990 1.16965 0.88960 0.90372 0.92682 0.91606 0.92132 0.89007 0.88570 0.91157 0.92676 0.73733 0.86830 0.87239 0.89087 0.87063 0.85452 0.71384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.88 71.98 0.64 -0.81 16 2 C -0.08 -1.07 2.83 -11.54 -0.03 -1.10 16 3 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.11 -1.98 4.03 30.60 0.12 -1.86 16 5 C -0.11 -1.85 5.11 30.60 0.16 -1.70 16 6 C 0.11 2.77 6.22 86.38 0.54 3.30 16 7 N -1.11 -29.22 6.00 -187.49 -1.12 -30.35 16 8 S 2.73 99.60 5.73 -56.49 -0.32 99.28 16 9 O -1.00 -39.71 17.26 -128.00 -2.21 -41.92 16 10 O -1.00 -41.49 16.72 -128.00 -2.14 -43.63 16 11 C -0.80 -34.77 5.97 22.46 0.13 -34.63 16 12 C -0.02 -0.97 9.49 22.22 0.21 -0.76 16 13 C -0.21 -10.82 8.70 22.73 0.20 -10.62 16 14 C 0.11 5.79 5.57 -21.29 -0.12 5.67 16 15 C -0.47 -23.55 9.05 23.46 0.21 -23.33 16 16 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 17 C 0.03 1.62 5.14 85.25 0.44 2.06 16 18 N -0.80 -38.69 10.95 21.83 0.24 -38.45 16 19 Si 0.99 34.98 29.59 68.60 2.03 37.01 16 20 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 21 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 22 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 23 C -0.26 -12.44 9.80 22.73 0.22 -12.22 16 24 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 25 C 0.48 8.79 7.63 71.24 0.54 9.33 16 26 O -0.56 -15.09 16.68 21.96 0.37 -14.72 16 27 O -0.51 -6.28 13.33 -51.35 -0.68 -6.96 16 28 H 0.09 0.67 6.56 -2.39 -0.02 0.65 16 29 H 0.08 0.65 8.11 -2.38 -0.02 0.63 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.35 7.96 -2.39 -0.02 1.33 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.18 6.56 -2.39 -0.02 1.17 16 35 H 0.07 1.87 7.75 -2.38 -0.02 1.85 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.43 8.44 8.65 -96.74 -0.84 7.60 16 38 H 0.11 4.96 7.59 -2.91 -0.02 4.94 16 39 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 40 H 0.30 12.97 8.30 -92.70 -0.77 12.21 16 41 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 42 H 0.13 4.93 7.60 -2.91 -0.02 4.91 16 43 H 0.42 2.12 9.10 -74.06 -0.67 1.45 16 Total: -1.00 -72.15 376.52 -0.82 -72.98 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.45 Total: 33.28 kcal Atomic # 6 Polarization: -69.98 SS G_CDS: 3.48 Total: -66.50 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -0.89 Total: -68.80 kcal Atomic # 8 Polarization: -102.58 SS G_CDS: -4.67 Total: -107.24 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Atomic # 16 Polarization: 99.60 SS G_CDS: -0.32 Total: 99.28 kcal Total: -72.15 -0.82 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229514820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.028 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds