Wall clock time and date at job start Sat Apr 11 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.52996 * 109.47171 * 239.99743 * 2 1 3 5 5 C 1.52999 * 109.46848 * 64.99899 * 4 2 1 6 6 C 1.53006 * 109.47089 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47010 * 179.97438 * 6 5 4 8 8 S 1.65605 * 119.99749 * 165.00439 * 7 6 5 9 9 O 1.42097 * 106.40042 * 178.54368 * 8 7 6 10 10 O 1.42098 * 106.39976 * 311.46081 * 8 7 6 11 11 C 1.76198 * 107.21959 * 65.00261 * 8 7 6 12 12 C 1.38642 * 119.74569 * 269.72683 * 11 8 7 13 13 C 1.37618 * 120.24399 * 179.71869 * 12 11 8 14 14 C 1.40714 * 119.74440 * 0.57487 * 13 12 11 15 15 C 1.41394 * 120.24295 * 179.67897 * 14 13 12 16 16 H 1.08002 * 119.99971 * 204.41165 * 15 14 13 17 17 C 1.39942 * 120.00085 * 24.40445 * 15 14 13 18 18 N 1.30822 * 120.00256 * 17.84880 * 17 15 14 19 19 Si 1.86800 * 120.00131 * 197.84809 * 17 15 14 20 20 H 1.48503 * 109.47247 * 90.00405 * 19 17 15 21 21 H 1.48506 * 109.47131 * 209.99833 * 19 17 15 22 22 H 1.48497 * 109.47208 * 330.00152 * 19 17 15 23 23 C 1.40708 * 119.51440 * 359.70371 * 14 13 12 24 24 C 1.37624 * 119.74634 * 359.97438 * 23 14 13 25 25 C 1.50698 * 109.47001 * 120.00087 * 2 1 3 26 26 O 1.20824 * 120.00488 * 120.00124 * 25 2 1 27 27 O 1.34236 * 119.99911 * 299.99682 * 25 2 1 28 28 H 1.09003 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47188 * 299.99685 * 1 2 3 30 30 H 1.08997 * 109.47142 * 60.00174 * 1 2 3 31 31 H 1.08998 * 109.47487 * 305.00171 * 4 2 1 32 32 H 1.08995 * 109.47309 * 185.00139 * 4 2 1 33 33 H 1.09004 * 109.47278 * 60.00451 * 5 4 2 34 34 H 1.08998 * 109.47336 * 299.99681 * 5 4 2 35 35 H 1.09000 * 109.46711 * 60.00671 * 6 5 4 36 36 H 1.08995 * 109.47428 * 300.00460 * 6 5 4 37 37 H 0.96999 * 120.00100 * 345.00373 * 7 6 5 38 38 H 1.07998 * 119.87817 * 359.97438 * 12 11 8 39 39 H 1.07999 * 120.12417 * 180.27959 * 13 12 11 40 40 H 0.96995 * 120.00567 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.13489 * 179.97438 * 23 14 13 42 42 H 1.07996 * 119.88019 * 179.97438 * 24 23 14 43 43 H 0.96698 * 116.99945 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0689 -2.4952 6 6 2.1458 -0.6521 -3.7445 7 7 1.7576 0.1042 -4.9376 8 16 2.4753 -0.2215 -6.3941 9 8 1.8668 0.6432 -7.3435 10 8 3.8756 -0.2496 -6.1540 11 6 2.0151 -1.8608 -6.8474 12 6 2.8059 -2.9303 -6.4564 13 6 2.4530 -4.2153 -6.7998 14 6 1.2912 -4.4405 -7.5611 15 6 0.9224 -5.7559 -7.9256 16 1 0.3038 -5.9219 -8.7952 17 6 1.3591 -6.8427 -7.1597 18 7 1.7978 -6.6508 -5.9423 19 14 1.3155 -8.5675 -7.8757 20 1 2.6021 -8.8519 -8.5605 21 1 1.1081 -9.5518 -6.7832 22 1 0.2017 -8.6700 -8.8524 23 6 0.4993 -3.3469 -7.9573 24 6 0.8678 -2.0709 -7.5968 25 6 2.0323 -0.7104 1.2304 26 8 2.7270 -1.6928 1.1197 27 8 1.7080 -0.2518 2.4496 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 2.0699 1.0674 -2.4494 34 1 0.5489 0.1470 -2.5389 35 1 1.7114 -1.6507 -3.7906 36 1 3.2320 -0.7300 -3.7006 37 1 1.0803 0.7957 -4.8745 38 1 3.7000 -2.7546 -5.8766 39 1 3.0681 -5.0474 -6.4903 40 1 2.1002 -7.4041 -5.4113 41 1 -0.3942 -3.5082 -8.5421 42 1 0.2619 -1.2299 -7.9001 43 1 2.0541 -0.7405 3.2089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229514830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:46 Heat of formation + Delta-G solvation = -202.030053 kcal Electronic energy + Delta-G solvation = -26905.449228 eV Core-core repulsion = 22847.094309 eV Total energy + Delta-G solvation = -4058.354919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37370 -39.37636 -38.20933 -37.84501 -37.03535 -36.76382 -35.80574 -35.50312 -32.06199 -31.29411 -31.24767 -27.61536 -26.96148 -25.41107 -23.33292 -22.96617 -22.73362 -21.05803 -20.24010 -19.41792 -19.00670 -18.58123 -18.18264 -17.56409 -17.21991 -17.06993 -16.84580 -16.24124 -15.86236 -15.81694 -15.15605 -14.96886 -14.71839 -14.60580 -14.10454 -13.96343 -13.90585 -13.67810 -13.56490 -13.33744 -13.09916 -13.00242 -12.90506 -12.87979 -12.63442 -12.58941 -12.52857 -12.40541 -12.30336 -11.98004 -11.79736 -11.59972 -11.53109 -11.38104 -11.29240 -11.23172 -10.32082 -9.78683 -9.54462 -8.87272 -6.64865 -0.26846 0.48952 1.06179 1.22823 1.35285 1.43219 1.50229 2.10904 2.12150 2.30624 2.54350 2.96277 3.53224 3.56795 3.70284 3.90855 4.06606 4.13736 4.26569 4.31892 4.33196 4.41234 4.55532 4.73207 4.74650 4.81666 4.87271 4.94006 4.99536 5.01339 5.09954 5.15575 5.21676 5.24677 5.38905 5.46681 5.52850 5.60076 5.64580 5.76964 5.93546 6.15719 6.27895 6.49466 6.68577 6.81442 7.00767 8.07583 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009036 B = 0.003051 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.089519 B = 9174.070536 C =11520.228602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.136 0.864 4 C -0.108 4.108 5 C -0.114 4.114 6 C 0.111 3.889 7 N -1.107 6.107 8 S 2.727 3.273 9 O -1.001 7.001 10 O -1.005 7.005 11 C -0.797 4.797 12 C -0.021 4.021 13 C -0.208 4.208 14 C 0.111 3.889 15 C -0.466 4.466 16 H 0.091 0.909 17 C 0.035 3.965 18 N -0.795 5.795 19 Si 0.990 3.010 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.253 1.253 23 C -0.258 4.258 24 C -0.001 4.001 25 C 0.482 3.518 26 O -0.557 6.557 27 O -0.511 6.511 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.426 0.574 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.298 0.702 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 10.267 14.010 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.154 0.846 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.016 4.016 7 N -0.869 5.869 8 S 2.822 3.178 9 O -0.992 6.992 10 O -0.995 6.995 11 C -0.890 4.890 12 C -0.041 4.041 13 C -0.228 4.228 14 C 0.107 3.893 15 C -0.493 4.493 16 H 0.109 0.891 17 C -0.185 4.185 18 N -0.418 5.418 19 Si 0.810 3.190 20 H -0.186 1.186 21 H -0.188 1.188 22 H -0.177 1.177 23 C -0.279 4.279 24 C -0.021 4.021 25 C 0.326 3.674 26 O -0.448 6.448 27 O -0.324 6.324 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.911 10.565 13.418 17.324 hybrid contribution -0.136 -1.887 0.399 1.934 sum -3.047 8.678 13.816 16.598 Atomic orbital electron populations 1.21865 0.90665 1.02943 1.04794 1.21096 0.99248 1.01617 0.87679 0.84617 1.21429 1.01691 0.99216 0.92345 1.21770 1.03168 0.99810 0.90537 1.21368 1.00286 0.95113 0.84797 1.55216 1.57926 1.50358 1.23362 1.00218 0.72511 0.72946 0.72085 1.93462 1.78414 1.66104 1.61187 1.93458 1.32426 1.87872 1.85753 1.29689 1.11960 1.20901 1.26447 1.20452 0.96055 0.92445 0.95101 1.21355 0.99006 0.95711 1.06771 1.18203 0.89627 0.93697 0.87747 1.20222 1.27328 0.91153 1.10608 0.89095 1.26990 0.91301 1.06304 0.93883 1.69842 1.27405 1.36495 1.08061 0.85061 0.80244 0.74536 0.79171 1.18589 1.18793 1.17654 1.21288 1.02297 0.93032 1.11241 1.20469 0.92871 0.96793 0.91951 1.23996 0.75771 0.81771 0.85823 1.90748 1.37938 1.28175 1.87902 1.84496 1.71955 1.58995 1.16966 0.93045 0.90321 0.88950 0.92111 0.91632 0.88808 0.88749 0.92592 0.91245 0.73728 0.86863 0.87251 0.89096 0.87057 0.85435 0.71382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.88 71.98 0.64 -0.94 16 2 C -0.08 -1.05 2.83 -11.54 -0.03 -1.09 16 3 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -1.98 4.03 30.59 0.12 -1.85 16 5 C -0.11 -1.85 5.11 30.60 0.16 -1.69 16 6 C 0.11 2.76 6.22 86.38 0.54 3.30 16 7 N -1.11 -29.20 6.00 -187.49 -1.12 -30.32 16 8 S 2.73 99.62 5.73 -56.49 -0.32 99.30 16 9 O -1.00 -39.69 17.26 -128.00 -2.21 -41.90 16 10 O -1.00 -41.66 16.72 -128.00 -2.14 -43.80 16 11 C -0.80 -34.66 5.97 22.46 0.13 -34.53 16 12 C -0.02 -0.97 9.49 22.22 0.21 -0.76 16 13 C -0.21 -10.78 8.70 22.73 0.20 -10.58 16 14 C 0.11 5.78 5.57 -21.29 -0.12 5.66 16 15 C -0.47 -23.45 9.05 23.46 0.21 -23.24 16 16 H 0.09 4.33 7.91 -2.91 -0.02 4.30 16 17 C 0.03 1.62 5.14 85.26 0.44 2.05 16 18 N -0.80 -38.58 10.95 21.83 0.24 -38.34 16 19 Si 0.99 34.93 29.59 68.60 2.03 36.96 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 21 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 22 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 23 C -0.26 -12.37 9.80 22.73 0.22 -12.15 16 24 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 25 C 0.48 8.73 7.63 71.24 0.54 9.27 16 26 O -0.56 -14.97 16.68 21.97 0.37 -14.60 16 27 O -0.51 -6.23 13.33 -51.48 -0.69 -6.92 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.70 8.11 -2.39 -0.02 0.69 16 30 H 0.09 0.74 6.56 -2.39 -0.02 0.73 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 33 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.09 1.19 6.56 -2.39 -0.02 1.18 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.86 7.75 -2.39 -0.02 1.84 16 37 H 0.43 8.41 8.65 -96.74 -0.84 7.57 16 38 H 0.11 4.95 7.59 -2.91 -0.02 4.93 16 39 H 0.11 5.82 6.16 -2.91 -0.02 5.80 16 40 H 0.30 12.89 8.30 -92.71 -0.77 12.12 16 41 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.13 4.92 7.60 -2.91 -0.02 4.89 16 43 H 0.42 2.07 9.10 -74.06 -0.67 1.40 16 Total: -1.00 -72.04 376.52 -0.83 -72.87 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.45 Total: 33.14 kcal Atomic # 6 Polarization: -69.86 SS G_CDS: 3.48 Total: -66.39 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.89 Total: -68.66 kcal Atomic # 8 Polarization: -102.55 SS G_CDS: -4.67 Total: -107.22 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.96 kcal Atomic # 16 Polarization: 99.62 SS G_CDS: -0.32 Total: 99.30 kcal Total: -72.04 -0.83 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229514830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.161 kcal (2) G-P(sol) polarization free energy of solvation -72.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds