Wall clock time and date at job start Sat Apr 11 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37097 * 120.00299 * 2 1 4 4 H 1.08000 * 120.00222 * 202.40845 * 3 2 1 5 5 C 1.38951 * 119.99743 * 22.40339 * 3 2 1 6 6 N 1.31412 * 120.00214 * 11.59432 * 5 3 2 7 7 Si 1.86795 * 119.99968 * 191.59984 * 5 3 2 8 8 H 1.48500 * 109.47375 * 60.00053 * 7 5 3 9 9 H 1.48503 * 109.47459 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47041 * 299.99964 * 7 5 3 11 11 C 1.34783 * 120.00124 * 179.97438 * 2 1 3 12 12 O 1.21287 * 119.99943 * 180.02562 * 11 2 1 13 13 C 1.50704 * 119.99780 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.46854 * 179.97438 * 13 11 2 15 15 C 1.52998 * 109.47064 * 179.97438 * 14 13 11 16 16 O 1.42894 * 109.47252 * 179.97438 * 15 14 13 17 17 C 1.35907 * 117.00389 * 179.97438 * 16 15 14 18 18 C 1.38729 * 120.05766 * 179.97438 * 17 16 15 19 19 C 1.38144 * 119.93953 * 180.02562 * 18 17 16 20 20 C 1.38261 * 120.05918 * 0.02562 * 19 18 17 21 21 S 1.76199 * 119.94558 * 179.97438 * 20 19 18 22 22 C 1.81402 * 104.44935 * 89.99788 * 21 20 19 23 23 O 1.42104 * 104.27737 * 333.92706 * 21 20 19 24 24 O 1.42092 * 104.27988 * 206.06981 * 21 20 19 25 25 C 1.38266 * 120.11420 * 0.24924 * 20 19 18 26 26 C 1.38147 * 120.04938 * 359.45429 * 25 20 19 27 27 H 1.09000 * 109.47333 * 272.15608 * 1 2 3 28 28 H 1.08999 * 109.47269 * 32.16607 * 1 2 3 29 29 H 1.09007 * 109.47059 * 152.16377 * 1 2 3 30 30 H 0.97001 * 120.00230 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.46956 * 59.99960 * 13 11 2 32 32 H 1.09002 * 109.46955 * 299.99396 * 13 11 2 33 33 H 1.09006 * 109.47189 * 60.00137 * 14 13 11 34 34 H 1.08995 * 109.47560 * 299.99976 * 14 13 11 35 35 H 1.09002 * 109.47166 * 60.00062 * 15 14 13 36 36 H 1.09003 * 109.47488 * 300.00337 * 15 14 13 37 37 H 1.07997 * 120.02677 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.96784 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47464 * 60.00401 * 22 21 20 40 40 H 1.08999 * 109.47099 * 299.99937 * 22 21 20 41 41 H 1.09009 * 109.47101 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.97778 * 179.70733 * 25 20 19 43 43 H 1.08005 * 120.02509 * 180.25043 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3452 0.4586 6 7 0.3895 2.2708 1.0994 7 14 2.3335 4.0077 0.1642 8 1 2.4814 4.2343 -1.2959 9 1 1.4824 5.0762 0.7467 10 1 3.6718 4.0345 0.8074 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3853 -2.4724 0.0005 14 6 2.3796 -3.6353 0.0005 15 6 1.6146 -4.9603 0.0012 16 8 2.5432 -6.0464 0.0006 17 6 2.0238 -7.3023 0.0016 18 6 2.8679 -8.4033 0.0005 19 6 2.3373 -9.6788 0.0010 20 6 0.9664 -9.8586 0.0020 21 16 0.2930 -11.4868 0.0019 22 6 0.1214 -11.9057 1.7586 23 8 1.3016 -12.2832 -0.6044 24 8 -0.9845 -11.3377 -0.6022 25 6 0.1231 -8.7630 -0.0027 26 6 0.6486 -7.4854 0.0030 27 1 -0.3634 0.0387 1.0269 28 1 -0.3634 0.8699 -0.5471 29 1 -0.3633 -0.9088 -0.4799 30 1 -0.0408 3.0791 1.4193 31 1 0.7590 -2.5303 -0.8897 32 1 0.7584 -2.5299 0.8904 33 1 3.0063 -3.5775 0.8906 34 1 3.0063 -3.5776 -0.8894 35 1 0.9877 -5.0183 -0.8886 36 1 0.9882 -5.0178 0.8913 37 1 3.9387 -8.2633 -0.0007 38 1 2.9940 -10.5362 0.0006 39 1 -0.5452 -11.1898 2.2395 40 1 1.0997 -11.8701 2.2378 41 1 -0.2932 -12.9094 1.8539 42 1 -0.9474 -8.9060 -0.0067 43 1 -0.0106 -6.6298 0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263651293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:49 Heat of formation + Delta-G solvation = -110.943506 kcal Electronic energy + Delta-G solvation = -26039.958529 eV Core-core repulsion = 21985.553419 eV Total energy + Delta-G solvation = -4054.405110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.52125 -38.62447 -37.86148 -37.45190 -36.27943 -34.87580 -33.47103 -31.65804 -31.47511 -30.63279 -29.86715 -27.54955 -26.12435 -24.48000 -23.44683 -23.03210 -21.42508 -19.40556 -19.06091 -18.44724 -17.67389 -16.93386 -16.69109 -16.59591 -16.45966 -16.02136 -15.59176 -15.05884 -14.89198 -14.57816 -14.22714 -14.00951 -13.91334 -13.73872 -13.64660 -13.53556 -13.32319 -12.75805 -12.46830 -12.43173 -12.33357 -11.95722 -11.85566 -11.64236 -11.52166 -11.43372 -11.22911 -11.18088 -11.06659 -10.97764 -10.83843 -10.54166 -10.42364 -10.24737 -9.50064 -9.05809 -8.88496 -8.45657 -7.72745 -6.34923 -3.91637 -0.31193 0.57379 0.90307 2.50572 2.83118 3.06426 3.16231 3.21941 3.26117 3.57782 3.72891 3.84671 4.10876 4.28685 4.31110 4.40257 4.51995 4.73353 4.80118 4.87492 4.93933 5.08838 5.11123 5.13473 5.16225 5.22333 5.47070 5.50946 5.61423 5.64250 5.71889 5.78059 5.89490 5.98868 6.25528 6.30146 6.36335 6.50415 6.82979 7.05230 7.17298 7.53054 8.09038 8.44571 9.15149 9.38935 9.94040 10.68763 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.037153 B = 0.001601 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.469125 B =17482.274808 C =17956.584681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.447 5.447 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.928 3.072 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.445 3.555 12 O -0.591 6.591 13 C -0.126 4.126 14 C -0.098 4.098 15 C 0.055 3.945 16 O -0.304 6.304 17 C 0.192 3.808 18 C -0.175 4.175 19 C 0.013 3.987 20 C -0.707 4.707 21 S 2.506 3.494 22 C -0.651 4.651 23 O -0.941 6.941 24 O -0.941 6.941 25 C 0.018 3.982 26 C -0.232 4.232 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.268 0.732 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.144 0.856 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -25.721 1.911 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.166 5.166 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.755 3.245 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.233 3.767 12 O -0.476 6.476 13 C -0.166 4.166 14 C -0.136 4.136 15 C -0.020 4.020 16 O -0.215 6.215 17 C 0.145 3.855 18 C -0.195 4.195 19 C -0.006 4.006 20 C -0.794 4.794 21 S 2.686 3.314 22 C -0.801 4.801 23 O -0.938 6.938 24 O -0.938 6.938 25 C -0.001 4.001 26 C -0.252 4.252 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.161 0.839 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.269 -25.947 1.285 26.327 hybrid contribution 0.061 1.683 0.655 1.807 sum -4.208 -24.264 1.940 24.702 Atomic orbital electron populations 1.21512 0.81146 0.98797 1.01708 1.43600 1.05539 1.04830 1.62621 1.19621 0.99486 0.83871 1.40494 0.88416 1.25348 0.96521 1.00121 0.95357 1.69984 1.17373 1.29412 1.35661 0.85972 0.79022 0.80785 0.78763 1.19918 1.20938 1.19778 1.19917 0.88034 0.84754 0.84019 1.90523 1.13990 1.87147 1.55919 1.21404 0.98509 0.93766 1.02945 1.21216 0.98232 0.88966 1.05208 1.23145 0.91962 0.85165 1.01688 1.86164 1.37069 1.12037 1.86277 1.19428 0.92080 0.85269 0.88772 1.20606 1.00531 0.90166 1.08171 1.20719 0.92888 0.97349 0.89607 1.30273 1.03229 1.21708 1.24230 1.04894 0.74539 0.74399 0.77525 1.30246 1.12172 1.12228 1.25462 1.93580 1.59074 1.67977 1.73214 1.93580 1.41204 1.85759 1.73301 1.20720 0.99663 0.90866 0.88892 1.21464 0.94271 0.98949 1.10468 0.92385 0.91291 0.95534 0.92198 0.90298 0.90104 0.90123 0.90172 0.91503 0.91464 0.84058 0.83561 0.84990 0.84976 0.85157 0.83879 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 8.52 59.84 0.51 2.92 16 2 N -0.45 -11.25 3.02 -122.19 -0.37 -11.61 16 3 C -0.31 -8.49 9.29 -14.93 -0.14 -8.63 16 4 H 0.10 2.83 7.41 -52.49 -0.39 2.45 16 5 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 6 N -0.88 -23.27 10.62 55.50 0.59 -22.68 16 7 Si 0.93 20.62 29.57 -169.99 -5.03 15.59 16 8 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 C 0.44 10.46 7.63 -10.98 -0.08 10.38 16 12 O -0.59 -16.05 15.67 5.55 0.09 -15.96 16 13 C -0.13 -2.08 4.22 -27.88 -0.12 -2.20 16 14 C -0.10 -1.48 4.87 -26.73 -0.13 -1.61 16 15 C 0.05 0.63 4.74 37.16 0.18 0.81 16 16 O -0.30 -3.81 10.14 -19.45 -0.20 -4.01 16 17 C 0.19 2.12 6.69 -39.22 -0.26 1.86 16 18 C -0.18 -1.71 9.99 -39.43 -0.39 -2.10 16 19 C 0.01 0.11 9.46 -39.61 -0.37 -0.26 16 20 C -0.71 -5.78 5.66 -39.56 -0.22 -6.00 16 21 S 2.51 17.06 5.80 -107.50 -0.62 16.43 16 22 C -0.65 -1.78 10.80 101.05 1.09 -0.69 16 23 O -0.94 -9.35 17.12 -57.54 -0.99 -10.33 16 24 O -0.94 -9.47 17.11 -57.54 -0.98 -10.45 16 25 C 0.02 0.15 9.46 -39.60 -0.37 -0.22 16 26 C -0.23 -2.21 9.04 -39.43 -0.36 -2.57 16 27 H 0.06 1.29 7.54 -51.93 -0.39 0.90 16 28 H 0.07 1.57 7.06 -51.93 -0.37 1.21 16 29 H 0.03 0.45 6.36 -51.93 -0.33 0.12 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.08 1.13 7.41 -51.93 -0.38 0.75 16 32 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 33 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 35 H 0.07 0.66 7.66 -51.93 -0.40 0.27 16 36 H 0.07 0.66 7.66 -51.93 -0.40 0.26 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 0.90 7.57 -52.48 -0.40 0.51 16 39 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 40 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 41 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 42 H 0.14 0.94 7.56 -52.49 -0.40 0.54 16 43 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -36.79 373.47 -8.52 -45.31 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.87 Total: -0.27 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.77 Total: -7.64 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.22 Total: -34.30 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -2.08 Total: -40.76 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: 17.06 SS G_CDS: -0.62 Total: 16.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.79 -8.52 -45.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263651293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.637 kcal (2) G-P(sol) polarization free energy of solvation -36.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds