Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46593 * 2 1 4 4 S 1.81399 * 109.46751 * 179.97438 * 3 2 1 5 5 O 1.42102 * 108.57859 * 65.51128 * 4 3 2 6 6 O 1.42097 * 108.58012 * 294.48616 * 4 3 2 7 7 C 1.81402 * 101.92192 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.47185 * 180.02562 * 7 4 3 9 9 O 1.21277 * 119.99960 * 359.97438 * 8 7 4 10 10 N 1.34769 * 119.99776 * 180.02562 * 8 7 4 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09003 * 109.47601 * 300.00101 * 1 2 3 28 28 H 1.08999 * 109.47285 * 60.00378 * 1 2 3 29 29 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47152 * 239.99975 * 2 1 3 31 31 H 1.08996 * 109.46807 * 119.99493 * 2 1 3 32 32 H 1.08998 * 109.47392 * 60.00122 * 3 2 1 33 33 H 1.08996 * 109.47130 * 299.99295 * 3 2 1 34 34 H 1.08998 * 109.47284 * 59.99780 * 7 4 3 35 35 H 1.09005 * 109.47041 * 299.99931 * 7 4 3 36 36 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 38 38 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4426 0.0008 5 8 4.3071 0.8841 -1.2248 6 8 4.3061 0.8846 1.2268 7 6 4.2285 3.2175 -0.0001 8 6 5.7225 3.4156 -0.0003 9 8 6.4616 2.4541 0.0007 10 7 6.2371 4.6612 -0.0004 11 6 7.6894 4.8538 0.0001 12 6 8.0006 6.3282 -0.0008 13 6 8.1427 7.0043 1.1973 14 6 8.4284 8.3554 1.1999 15 6 8.5725 9.0354 -0.0024 16 8 8.8538 10.3635 -0.0032 17 6 9.0942 10.9389 1.1922 18 1 8.9781 10.3662 2.1004 19 6 9.4904 12.2662 1.2556 20 7 9.6323 12.9639 0.1493 21 14 9.8241 13.0633 2.9117 22 1 9.5944 12.0721 3.9933 23 1 11.2321 13.5325 2.9605 24 1 8.9104 14.2191 3.0979 25 6 8.4230 8.3552 -1.2039 26 6 8.1430 7.0028 -1.1997 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5137 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8005 3.6797 0.8893 35 1 3.8012 3.6787 -0.8906 36 1 5.6459 5.4302 -0.0008 37 1 8.1174 4.3919 -0.8897 38 1 8.1168 4.3925 0.8903 39 1 8.0309 6.4748 2.1320 40 1 8.5396 8.8826 2.1359 41 1 9.9090 13.8924 0.1936 42 1 8.5301 8.8822 -2.1405 43 1 8.0310 6.4723 -2.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263921834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -116.612681 kcal Electronic energy + Delta-G solvation = -25973.449694 eV Core-core repulsion = 21918.798750 eV Total energy + Delta-G solvation = -4054.650944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.00585 -39.12254 -37.23412 -36.98515 -36.28089 -35.36386 -34.65496 -32.46413 -31.42772 -30.35014 -29.50767 -28.20417 -25.93377 -24.73472 -22.53165 -22.13096 -20.94988 -20.75624 -19.15858 -18.15801 -17.88820 -17.32753 -16.91429 -16.83466 -16.34383 -15.89030 -15.47974 -15.20868 -14.75729 -14.67070 -14.38320 -14.07814 -13.89055 -13.71772 -13.60037 -13.29824 -13.08788 -13.08562 -12.86159 -12.69389 -12.28631 -12.22491 -12.15080 -11.98983 -11.74670 -11.54039 -11.45385 -11.39021 -11.06602 -10.87712 -10.82990 -10.76713 -10.52031 -10.38868 -9.49570 -9.21164 -8.97481 -8.36439 -7.40836 -6.58796 -4.17734 -0.49099 1.95465 2.05533 2.24564 2.38229 2.88400 3.04630 3.06231 3.11525 3.49450 3.62331 3.85424 4.02784 4.12436 4.23596 4.46717 4.48650 4.57382 4.73154 4.80772 4.95277 4.98878 5.07106 5.09120 5.15384 5.33125 5.42185 5.43886 5.58046 5.62733 5.72003 5.81044 6.05091 6.24231 6.27250 6.52218 6.72658 6.87974 7.05912 7.18797 7.25630 7.28793 7.63886 7.85776 7.87121 8.86529 9.53810 10.58592 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.001738 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.501027 B =16111.147123 C =16436.430944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.620 4.620 4 S 2.450 3.550 5 O -0.920 6.920 6 O -0.920 6.920 7 C -0.662 4.662 8 C 0.536 3.464 9 O -0.535 6.535 10 N -0.707 5.707 11 C 0.175 3.825 12 C -0.219 4.219 13 C -0.050 4.050 14 C -0.237 4.237 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.095 0.905 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.943 3.057 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.195 4.195 26 C -0.054 4.054 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.406 0.594 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.271 0.729 42 H 0.119 0.881 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -18.518 0.260 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.749 4.749 4 S 2.628 3.372 5 O -0.917 6.917 6 O -0.917 6.917 7 C -0.790 4.790 8 C 0.320 3.680 9 O -0.413 6.413 10 N -0.358 5.358 11 C 0.053 3.947 12 C -0.220 4.220 13 C -0.069 4.069 14 C -0.257 4.257 15 C 0.106 3.894 16 O -0.074 6.074 17 C -0.470 4.470 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.215 4.215 26 C -0.072 4.072 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.241 0.759 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.063 -19.434 0.015 25.213 hybrid contribution -0.770 1.863 0.866 2.194 sum -16.833 -17.571 0.881 24.349 Atomic orbital electron populations 1.21731 0.93804 1.02483 1.02393 1.21281 0.98458 0.91718 1.04178 1.30492 1.25954 1.06642 1.11767 1.07478 0.77414 0.76466 0.75859 1.93586 1.78588 1.73703 1.45801 1.93586 1.78618 1.73707 1.45769 1.30896 1.03581 1.31015 1.13463 1.19118 0.87327 0.84465 0.77134 1.90862 1.60616 1.39613 1.50229 1.46246 1.09233 1.06982 1.73365 1.20125 0.78610 0.93480 1.02494 1.19165 1.14980 0.94075 0.93804 1.20655 0.96091 0.93670 0.96435 1.21167 1.11049 0.94907 0.98536 1.19450 0.91668 0.84949 0.93315 1.83977 1.74453 1.15764 1.33254 1.21418 1.47434 0.95115 0.83040 0.88810 1.25336 0.96143 0.95535 0.99452 1.70041 1.42628 1.09446 1.27056 0.85617 0.78519 0.79245 0.79884 1.19022 1.20002 1.20055 1.20218 1.10885 0.94002 0.96348 1.20546 0.96917 0.93199 0.96575 0.92204 0.92209 0.91811 0.89997 0.90004 0.84785 0.84774 0.82269 0.82259 0.75933 0.90928 0.90968 0.87308 0.85343 0.91860 0.86299 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.64 5.94 -26.73 -0.16 -0.80 16 3 C -0.62 -2.62 5.81 37.16 0.22 -2.40 16 4 S 2.45 22.01 3.96 -107.50 -0.43 21.59 16 5 O -0.92 -11.94 17.94 -59.54 -1.07 -13.01 16 6 O -0.92 -11.98 17.95 -59.51 -1.07 -13.05 16 7 C -0.66 -4.49 6.29 36.01 0.23 -4.26 16 8 C 0.54 6.60 7.85 -10.99 -0.09 6.52 16 9 O -0.54 -8.94 15.62 2.56 0.04 -8.90 16 10 N -0.71 -8.12 5.55 -61.47 -0.34 -8.46 16 11 C 0.17 2.35 5.80 -5.19 -0.03 2.32 16 12 C -0.22 -3.35 5.25 -104.58 -0.55 -3.90 16 13 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 14 C -0.24 -4.76 9.17 -39.39 -0.36 -5.12 16 15 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 16 O -0.17 -4.67 9.76 0.05 0.00 -4.67 16 17 C -0.39 -10.51 9.49 30.89 0.29 -10.22 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.23 13.67 55.48 0.76 -23.47 16 21 Si 0.94 19.69 29.55 -169.99 -5.02 14.66 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.20 -3.80 9.99 -39.39 -0.39 -4.19 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 33 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.16 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.16 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.41 3.75 8.46 -40.82 -0.35 3.40 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -37.59 383.58 -8.91 -46.50 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.96 Total: 3.43 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.60 Total: -20.39 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.42 Total: -31.93 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -2.10 Total: -39.63 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 22.01 SS G_CDS: -0.43 Total: 21.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.59 -8.91 -46.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263921834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.116 kcal (2) G-P(sol) polarization free energy of solvation -37.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds