Wall clock time and date at job start Sat Apr 11 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46593 * 2 1 4 4 S 1.81399 * 109.46751 * 179.97438 * 3 2 1 5 5 O 1.42102 * 108.57859 * 65.51128 * 4 3 2 6 6 O 1.42097 * 108.58012 * 294.48616 * 4 3 2 7 7 C 1.81402 * 101.92192 * 179.97438 * 4 3 2 8 8 C 1.50702 * 109.47185 * 180.02562 * 7 4 3 9 9 O 1.21277 * 119.99960 * 359.97438 * 8 7 4 10 10 N 1.34769 * 119.99776 * 180.02562 * 8 7 4 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09003 * 109.47601 * 300.00101 * 1 2 3 28 28 H 1.08999 * 109.47285 * 60.00378 * 1 2 3 29 29 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47152 * 239.99975 * 2 1 3 31 31 H 1.08996 * 109.46807 * 119.99493 * 2 1 3 32 32 H 1.08998 * 109.47392 * 60.00122 * 3 2 1 33 33 H 1.08996 * 109.47130 * 299.99295 * 3 2 1 34 34 H 1.08998 * 109.47284 * 59.99780 * 7 4 3 35 35 H 1.09005 * 109.47041 * 299.99931 * 7 4 3 36 36 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 38 38 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4426 0.0008 5 8 4.3071 0.8841 -1.2248 6 8 4.3061 0.8846 1.2268 7 6 4.2285 3.2175 -0.0001 8 6 5.7225 3.4156 -0.0003 9 8 6.4616 2.4541 0.0007 10 7 6.2371 4.6612 -0.0004 11 6 7.6894 4.8538 0.0001 12 6 8.0006 6.3282 -0.0008 13 6 8.1427 7.0043 1.1973 14 6 8.4284 8.3554 1.1999 15 6 8.5725 9.0354 -0.0024 16 8 8.8538 10.3635 -0.0032 17 6 9.0942 10.9389 1.1922 18 1 8.9781 10.3662 2.1004 19 6 9.4904 12.2662 1.2556 20 7 9.6323 12.9639 0.1493 21 14 9.8241 13.0633 2.9117 22 1 9.5944 12.0721 3.9933 23 1 11.2321 13.5325 2.9605 24 1 8.9104 14.2191 3.0979 25 6 8.4230 8.3552 -1.2039 26 6 8.1430 7.0028 -1.1997 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5137 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.8005 3.6797 0.8893 35 1 3.8012 3.6787 -0.8906 36 1 5.6459 5.4302 -0.0008 37 1 8.1174 4.3919 -0.8897 38 1 8.1168 4.3925 0.8903 39 1 8.0309 6.4748 2.1320 40 1 8.5396 8.8826 2.1359 41 1 9.9090 13.8924 0.1936 42 1 8.5301 8.8822 -2.1405 43 1 8.0310 6.4723 -2.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263921834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:52 Heat of formation + Delta-G solvation = -146.403481 kcal Electronic energy + Delta-G solvation = -25974.741520 eV Core-core repulsion = 21918.798750 eV Total energy + Delta-G solvation = -4055.942770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13740 -40.62350 -38.55313 -38.00680 -37.03376 -35.89631 -35.67816 -34.30507 -32.39978 -31.84333 -30.65983 -28.57561 -27.64270 -26.15194 -23.66819 -22.99126 -22.22229 -21.84298 -19.91055 -19.82331 -18.99190 -18.59309 -17.94715 -17.46739 -17.11610 -16.71620 -16.49206 -16.30430 -16.20028 -15.77249 -15.74193 -15.52814 -15.14496 -14.75236 -14.43895 -14.42507 -14.35103 -13.87438 -13.58987 -13.50459 -13.37192 -13.25063 -13.07508 -13.05301 -13.01294 -12.62252 -12.36754 -12.32963 -12.28648 -12.10029 -12.03702 -11.77429 -11.50328 -11.27585 -11.21709 -10.82391 -10.24777 -9.83419 -9.04081 -8.49574 -6.17752 -1.09492 0.50767 0.55631 1.35103 1.35901 1.42765 1.53521 1.81489 2.01815 2.16068 2.75482 2.90910 3.08017 3.14525 3.47259 3.54596 3.64087 3.82811 3.83815 3.99376 4.04322 4.15504 4.25766 4.31531 4.41397 4.49873 4.54669 4.70164 4.72498 4.75736 4.78238 5.01775 5.12858 5.13054 5.13488 5.24318 5.25287 5.37214 5.50121 5.67411 5.71871 6.00256 6.13058 6.31832 6.95471 6.99340 7.74183 8.73285 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.001738 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.501027 B =16111.147123 C =16436.430944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C -0.584 4.584 4 S 2.427 3.573 5 O -0.978 6.978 6 O -0.978 6.978 7 C -0.647 4.647 8 C 0.525 3.475 9 O -0.587 6.587 10 N -0.699 5.699 11 C 0.176 3.824 12 C -0.184 4.184 13 C -0.045 4.045 14 C -0.243 4.243 15 C 0.124 3.876 16 O -0.228 6.228 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.018 2.982 22 H -0.251 1.251 23 H -0.271 1.271 24 H -0.268 1.268 25 C -0.204 4.204 26 C -0.043 4.043 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.205 0.795 35 H 0.206 0.794 36 H 0.420 0.580 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.230 -19.712 1.207 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.717 4.717 4 S 2.613 3.387 5 O -0.975 6.975 6 O -0.975 6.975 7 C -0.776 4.776 8 C 0.311 3.689 9 O -0.468 6.468 10 N -0.351 5.351 11 C 0.053 3.947 12 C -0.185 4.185 13 C -0.063 4.063 14 C -0.263 4.263 15 C 0.072 3.928 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.174 1.174 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.223 4.223 26 C -0.061 4.061 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.189 0.811 33 H 0.189 0.811 34 H 0.222 0.778 35 H 0.223 0.777 36 H 0.258 0.742 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.973 -20.698 0.961 28.094 hybrid contribution -0.035 1.843 0.467 1.902 sum -19.008 -18.854 1.428 26.811 Atomic orbital electron populations 1.21753 0.92232 1.02988 1.03405 1.21455 0.99764 0.92542 1.03647 1.30229 1.19253 1.06778 1.15468 1.07650 0.79901 0.77299 0.73806 1.93518 1.81115 1.75691 1.47157 1.93517 1.81151 1.75706 1.47152 1.30787 0.99673 1.29219 1.17915 1.19938 0.89558 0.83602 0.75785 1.90860 1.62534 1.41162 1.52267 1.46022 1.08398 1.07594 1.73057 1.20012 0.80287 0.91392 1.02962 1.19428 1.11114 0.94939 0.93028 1.20947 0.94760 0.92229 0.98376 1.21248 1.11302 0.96326 0.97395 1.20007 0.93069 0.84290 0.95387 1.83948 1.77733 1.18087 1.33682 1.21875 1.47661 0.95786 0.83607 0.87831 1.26574 0.95807 0.95925 1.03607 1.70179 1.45671 1.09957 1.29754 0.84535 0.78373 0.78315 0.75052 1.17387 1.19587 1.19322 1.20449 1.11015 0.95411 0.95430 1.20891 0.95025 0.91702 0.98492 0.91164 0.91152 0.91786 0.90792 0.90820 0.81135 0.81094 0.77789 0.77727 0.74246 0.90576 0.90828 0.84240 0.86144 0.91791 0.86599 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 71.98 0.71 0.00 16 2 C -0.14 -1.16 5.94 30.60 0.18 -0.98 16 3 C -0.58 -2.42 5.81 71.98 0.42 -2.00 16 4 S 2.43 39.42 3.96 -56.49 -0.22 39.20 16 5 O -0.98 -25.41 17.94 -125.74 -2.26 -27.67 16 6 O -0.98 -25.52 17.95 -125.76 -2.26 -27.78 16 7 C -0.65 -5.84 6.29 71.24 0.45 -5.39 16 8 C 0.53 11.34 7.85 87.66 0.69 12.03 16 9 O -0.59 -19.08 15.62 -0.15 0.00 -19.09 16 10 N -0.70 -13.22 5.55 -466.80 -2.59 -15.81 16 11 C 0.18 4.11 5.80 85.63 0.50 4.61 16 12 C -0.18 -5.01 5.25 -19.84 -0.10 -5.11 16 13 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 14 C -0.24 -9.67 9.17 22.39 0.21 -9.46 16 15 C 0.12 5.71 6.65 22.58 0.15 5.86 16 16 O -0.23 -13.10 9.76 -22.72 -0.22 -13.32 16 17 C -0.41 -23.02 9.49 67.92 0.64 -22.38 16 18 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 19 C -0.02 -1.16 5.49 84.84 0.47 -0.69 16 20 N -0.92 -54.63 13.67 21.62 0.30 -54.34 16 21 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 22 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 C -0.20 -7.88 9.99 22.39 0.22 -7.66 16 26 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 27 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.17 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.17 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.20 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.21 -0.04 8.14 -2.39 -0.02 -0.05 16 36 H 0.42 5.64 8.46 -92.71 -0.78 4.86 16 37 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 38 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.12 4.92 5.64 -2.91 -0.02 4.90 16 41 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -92.11 383.58 -0.02 -92.13 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.25 Total: 16.72 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.96 Total: -33.36 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -2.29 Total: -70.14 kcal Atomic # 8 Polarization: -83.11 SS G_CDS: -4.74 Total: -87.85 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 39.42 SS G_CDS: -0.22 Total: 39.20 kcal Total: -92.11 -0.02 -92.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263921834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.273 kcal (2) G-P(sol) polarization free energy of solvation -92.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds