Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47179 * 2 1 4 4 C 1.46499 * 119.99951 * 277.10352 * 3 2 1 5 5 C 1.50695 * 109.47061 * 85.00483 * 4 3 2 6 6 H 1.08002 * 120.00017 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00223 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00364 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99804 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47370 * 90.00064 * 9 7 5 11 11 H 1.48500 * 109.47060 * 210.00361 * 9 7 5 12 12 H 1.48506 * 109.47146 * 329.99809 * 9 7 5 13 13 S 1.65599 * 119.99708 * 97.38012 * 3 2 1 14 14 O 1.42094 * 106.40173 * 212.07578 * 13 3 2 15 15 O 1.42100 * 106.40580 * 344.99701 * 13 3 2 16 16 C 1.76202 * 107.21958 * 98.53797 * 13 3 2 17 17 C 1.37967 * 119.92538 * 115.02325 * 16 13 3 18 18 C 1.39610 * 119.84444 * 179.73408 * 17 16 13 19 19 C 1.47726 * 120.14805 * 180.27080 * 18 17 16 20 20 O 1.21467 * 120.00085 * 0.28918 * 19 18 17 21 21 O 1.34711 * 119.99868 * 180.29653 * 19 18 17 22 22 C 1.45207 * 116.99971 * 180.02562 * 21 19 18 23 23 C 1.39650 * 119.70414 * 0.56454 * 18 17 16 24 24 C 1.37927 * 119.84293 * 359.70405 * 23 18 17 25 25 C 1.38354 * 119.92457 * 295.29919 * 16 13 3 26 26 C 1.50697 * 119.84610 * 359.97438 * 25 16 13 27 27 H 1.09005 * 109.47248 * 300.00308 * 1 2 3 28 28 H 1.09013 * 109.46936 * 59.99506 * 1 2 3 29 29 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47035 * 240.00302 * 2 1 3 31 31 H 1.08997 * 109.46871 * 120.00176 * 2 1 3 32 32 H 1.09007 * 109.46936 * 205.00086 * 4 3 2 33 33 H 1.08994 * 109.47194 * 324.99979 * 4 3 2 34 34 H 0.96998 * 120.00377 * 180.02562 * 8 7 5 35 35 H 1.07997 * 120.07585 * 359.97438 * 17 16 13 36 36 H 1.09000 * 109.46670 * 59.99305 * 22 21 19 37 37 H 1.09000 * 109.46957 * 179.97438 * 22 21 19 38 38 H 1.08995 * 109.46953 * 299.99591 * 22 21 19 39 39 H 1.07992 * 120.07914 * 179.69091 * 23 18 17 40 40 H 1.07999 * 119.92181 * 179.97438 * 24 23 18 41 41 H 1.09003 * 109.47489 * 83.96392 * 26 25 16 42 42 H 1.08996 * 109.46802 * 203.96477 * 26 25 16 43 43 H 1.09003 * 109.46976 * 323.96454 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1146 2.1241 -1.2590 5 6 0.7805 2.7486 -1.5770 6 1 -0.0556 2.6059 -0.9084 7 6 0.6269 3.5011 -2.7220 8 7 -0.5375 4.0456 -2.9999 9 14 2.0728 3.7472 -3.8788 10 1 2.0865 2.6617 -4.8921 11 1 1.9430 5.0597 -4.5612 12 1 3.3386 3.7159 -3.1027 13 16 2.4680 2.1004 1.4223 14 8 2.1637 3.4818 1.2872 15 8 1.9467 1.2881 2.4652 16 6 4.2229 1.9861 1.5326 17 6 4.9900 3.1326 1.5101 18 6 6.3800 3.0404 1.6032 19 6 7.2075 4.2639 1.5858 20 8 6.6786 5.3537 1.4955 21 8 8.5488 4.1711 1.6698 22 6 9.2983 5.4146 1.6473 23 6 6.9849 1.7859 1.7067 24 6 6.2062 0.6476 1.7224 25 6 4.8286 0.7465 1.6359 26 6 3.9844 -0.5016 1.6542 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.8680 2.9060 -1.1628 33 1 2.3978 1.4435 -2.0617 34 1 -0.6456 4.5747 -3.8056 35 1 4.5162 4.0993 1.4245 36 1 8.9944 6.0372 2.4887 37 1 10.3640 5.1979 1.7221 38 1 9.0992 5.9420 0.7144 39 1 8.0598 1.7073 1.7740 40 1 6.6727 -0.3231 1.8020 41 1 3.7515 -0.7979 0.6313 42 1 4.5322 -1.3036 2.1489 43 1 3.0587 -0.3062 2.1955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264017156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -119.011454 kcal Electronic energy + Delta-G solvation = -28683.238175 eV Core-core repulsion = 24628.483213 eV Total energy + Delta-G solvation = -4054.754963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76849 -39.23760 -37.02660 -36.59987 -36.31077 -35.34097 -33.31209 -32.50765 -31.51192 -30.16766 -28.77383 -27.32022 -27.11561 -23.47040 -23.29870 -22.49903 -21.75616 -21.17447 -19.03220 -17.88102 -17.46274 -17.16580 -16.73654 -16.56463 -16.00528 -15.92759 -15.61431 -15.16431 -14.33806 -14.29684 -14.22288 -13.82353 -13.70772 -13.55924 -13.30306 -12.94550 -12.78128 -12.55182 -12.46775 -12.36643 -12.15457 -12.05114 -11.77781 -11.52165 -11.48373 -11.26588 -11.09477 -11.04807 -10.98583 -10.82079 -10.55166 -10.41913 -10.21715 -10.15662 -9.62120 -9.41335 -9.10801 -8.58630 -8.22106 -6.07229 -4.05988 0.32368 0.72754 0.90928 2.22498 2.41621 3.24795 3.25667 3.34387 3.35539 3.55856 4.15233 4.33774 4.38763 4.41050 4.57965 4.73073 4.80948 4.85812 4.93858 5.09981 5.17961 5.22657 5.27674 5.29994 5.38335 5.45982 5.56563 5.73180 5.75794 5.82451 5.89764 6.00025 6.05419 6.09398 6.10678 6.32094 6.49781 6.59198 6.65464 6.95937 7.09066 7.31774 7.52133 7.56631 8.49290 8.99282 9.51711 11.05893 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.004750 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.524682 B = 5893.927168 C = 7515.304673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 N -0.974 5.974 4 C 0.226 3.774 5 C -0.527 4.527 6 H 0.085 0.915 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.866 3.134 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.265 1.265 13 S 2.686 3.314 14 O -0.933 6.933 15 O -0.966 6.966 16 C -0.691 4.691 17 C 0.049 3.951 18 C -0.158 4.158 19 C 0.509 3.491 20 O -0.496 6.496 21 O -0.358 6.358 22 C 0.036 3.964 23 C -0.012 4.012 24 C -0.158 4.158 25 C 0.057 3.943 26 C -0.187 4.187 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.159 0.841 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.111 -9.151 8.958 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.008 4.008 3 N -0.814 5.814 4 C 0.102 3.898 5 C -0.566 4.566 6 H 0.103 0.897 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.693 3.307 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.190 1.190 13 S 2.773 3.227 14 O -0.923 6.923 15 O -0.956 6.956 16 C -0.774 4.774 17 C 0.030 3.970 18 C -0.160 4.160 19 C 0.354 3.646 20 O -0.384 6.384 21 O -0.275 6.275 22 C -0.057 4.057 23 C -0.031 4.031 24 C -0.177 4.177 25 C 0.056 3.944 26 C -0.243 4.243 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.177 0.823 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.389 -8.296 9.390 21.433 hybrid contribution 1.634 0.371 -1.061 1.983 sum 19.023 -7.925 8.330 22.227 Atomic orbital electron populations 1.22263 0.95630 1.01025 1.04305 1.21463 0.95665 0.81710 1.02010 1.57232 1.77097 1.23298 1.23790 1.19519 0.98659 0.90918 0.80654 1.21379 0.95928 1.31175 1.08140 0.89696 1.24836 0.95418 0.94987 0.97518 1.69876 1.23132 1.33896 1.26223 0.87013 0.83837 0.78190 0.81685 1.20051 1.20843 1.18983 1.02378 0.73182 0.73984 0.73127 1.93626 1.81710 1.31440 1.85535 1.93469 1.77387 1.69799 1.54922 1.31446 1.29401 0.98230 1.18305 1.21127 0.91729 0.98893 0.85247 1.19105 0.92960 0.91446 1.12523 1.21096 0.81198 0.89232 0.73083 1.90888 1.73452 1.29101 1.44981 1.86509 1.19487 1.37151 1.84310 1.23301 0.95270 0.84216 1.02930 1.21665 1.00728 0.91074 0.89591 1.21165 0.92964 0.99006 1.04533 1.19854 0.94597 0.93412 0.86562 1.22068 1.02351 0.94864 1.04979 0.92844 0.89623 0.92861 0.90879 0.90330 0.95147 0.95015 0.92530 0.82298 0.91691 0.87931 0.91622 0.83848 0.84225 0.88389 0.89503 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.75 37.16 0.36 -2.55 16 2 C 0.12 1.82 4.75 -4.04 -0.02 1.80 16 3 N -0.97 -18.70 2.75 -115.67 -0.32 -19.02 16 4 C 0.23 5.10 4.19 -5.20 -0.02 5.08 16 5 C -0.53 -14.43 8.85 -34.44 -0.30 -14.73 16 6 H 0.09 2.52 7.14 -52.49 -0.37 2.15 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 9 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 S 2.69 51.87 4.98 -107.50 -0.54 51.33 16 14 O -0.93 -21.92 16.26 -57.17 -0.93 -22.85 16 15 O -0.97 -18.32 14.35 -57.17 -0.82 -19.14 16 16 C -0.69 -11.16 5.90 -39.64 -0.23 -11.40 16 17 C 0.05 0.81 9.09 -39.17 -0.36 0.46 16 18 C -0.16 -2.24 5.87 -104.98 -0.62 -2.85 16 19 C 0.51 7.31 7.90 34.61 0.27 7.58 16 20 O -0.50 -8.58 16.14 -19.24 -0.31 -8.89 16 21 O -0.36 -4.04 9.82 -40.52 -0.40 -4.44 16 22 C 0.04 0.30 10.57 101.05 1.07 1.37 16 23 C -0.01 -0.13 9.62 -39.17 -0.38 -0.51 16 24 C -0.16 -1.64 9.65 -39.64 -0.38 -2.03 16 25 C 0.06 0.73 5.88 -104.53 -0.61 0.12 16 26 C -0.19 -1.98 7.87 36.00 0.28 -1.70 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.69 6.56 -51.92 -0.34 1.35 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 31 H 0.08 1.01 4.17 -51.93 -0.22 0.79 16 32 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 33 H 0.03 0.67 7.45 -51.93 -0.39 0.28 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.16 2.83 6.92 -52.49 -0.36 2.47 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.14 1.14 7.61 -52.49 -0.40 0.74 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.10 0.92 6.54 -51.93 -0.34 0.59 16 42 H 0.09 0.65 8.04 -51.93 -0.42 0.23 16 43 H 0.12 1.44 3.99 -51.93 -0.21 1.23 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -35.19 362.28 -8.31 -43.50 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.52 Total: 1.37 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.04 Total: -17.33 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.46 Total: -45.24 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -2.46 Total: -55.32 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.54 Total: 51.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.19 -8.31 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264017156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.514 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds