Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47179 * 2 1 4 4 C 1.46499 * 119.99951 * 277.10352 * 3 2 1 5 5 C 1.50695 * 109.47061 * 85.00483 * 4 3 2 6 6 H 1.08002 * 120.00017 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00223 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00364 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99804 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47370 * 90.00064 * 9 7 5 11 11 H 1.48500 * 109.47060 * 210.00361 * 9 7 5 12 12 H 1.48506 * 109.47146 * 329.99809 * 9 7 5 13 13 S 1.65599 * 119.99708 * 97.38012 * 3 2 1 14 14 O 1.42094 * 106.40173 * 212.07578 * 13 3 2 15 15 O 1.42100 * 106.40580 * 344.99701 * 13 3 2 16 16 C 1.76202 * 107.21958 * 98.53797 * 13 3 2 17 17 C 1.37967 * 119.92538 * 115.02325 * 16 13 3 18 18 C 1.39610 * 119.84444 * 179.73408 * 17 16 13 19 19 C 1.47726 * 120.14805 * 180.27080 * 18 17 16 20 20 O 1.21467 * 120.00085 * 0.28918 * 19 18 17 21 21 O 1.34711 * 119.99868 * 180.29653 * 19 18 17 22 22 C 1.45207 * 116.99971 * 180.02562 * 21 19 18 23 23 C 1.39650 * 119.70414 * 0.56454 * 18 17 16 24 24 C 1.37927 * 119.84293 * 359.70405 * 23 18 17 25 25 C 1.38354 * 119.92457 * 295.29919 * 16 13 3 26 26 C 1.50697 * 119.84610 * 359.97438 * 25 16 13 27 27 H 1.09005 * 109.47248 * 300.00308 * 1 2 3 28 28 H 1.09013 * 109.46936 * 59.99506 * 1 2 3 29 29 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47035 * 240.00302 * 2 1 3 31 31 H 1.08997 * 109.46871 * 120.00176 * 2 1 3 32 32 H 1.09007 * 109.46936 * 205.00086 * 4 3 2 33 33 H 1.08994 * 109.47194 * 324.99979 * 4 3 2 34 34 H 0.96998 * 120.00377 * 180.02562 * 8 7 5 35 35 H 1.07997 * 120.07585 * 359.97438 * 17 16 13 36 36 H 1.09000 * 109.46670 * 59.99305 * 22 21 19 37 37 H 1.09000 * 109.46957 * 179.97438 * 22 21 19 38 38 H 1.08995 * 109.46953 * 299.99591 * 22 21 19 39 39 H 1.07992 * 120.07914 * 179.69091 * 23 18 17 40 40 H 1.07999 * 119.92181 * 179.97438 * 24 23 18 41 41 H 1.09003 * 109.47489 * 83.96392 * 26 25 16 42 42 H 1.08996 * 109.46802 * 203.96477 * 26 25 16 43 43 H 1.09003 * 109.46976 * 323.96454 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1146 2.1241 -1.2590 5 6 0.7805 2.7486 -1.5770 6 1 -0.0556 2.6059 -0.9084 7 6 0.6269 3.5011 -2.7220 8 7 -0.5375 4.0456 -2.9999 9 14 2.0728 3.7472 -3.8788 10 1 2.0865 2.6617 -4.8921 11 1 1.9430 5.0597 -4.5612 12 1 3.3386 3.7159 -3.1027 13 16 2.4680 2.1004 1.4223 14 8 2.1637 3.4818 1.2872 15 8 1.9467 1.2881 2.4652 16 6 4.2229 1.9861 1.5326 17 6 4.9900 3.1326 1.5101 18 6 6.3800 3.0404 1.6032 19 6 7.2075 4.2639 1.5858 20 8 6.6786 5.3537 1.4955 21 8 8.5488 4.1711 1.6698 22 6 9.2983 5.4146 1.6473 23 6 6.9849 1.7859 1.7067 24 6 6.2062 0.6476 1.7224 25 6 4.8286 0.7465 1.6359 26 6 3.9844 -0.5016 1.6542 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.8680 2.9060 -1.1628 33 1 2.3978 1.4435 -2.0617 34 1 -0.6456 4.5747 -3.8056 35 1 4.5162 4.0993 1.4245 36 1 8.9944 6.0372 2.4887 37 1 10.3640 5.1979 1.7221 38 1 9.0992 5.9420 0.7144 39 1 8.0598 1.7073 1.7740 40 1 6.6727 -0.3231 1.8020 41 1 3.7515 -0.7979 0.6313 42 1 4.5322 -1.3036 2.1489 43 1 3.0587 -0.3062 2.1955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264017156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -144.489595 kcal Electronic energy + Delta-G solvation = -28684.342990 eV Core-core repulsion = 24628.483213 eV Total energy + Delta-G solvation = -4055.859778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79730 -40.22898 -38.54353 -37.87671 -37.63904 -36.95057 -34.65515 -34.22613 -32.54467 -31.74634 -29.62777 -29.11762 -27.94746 -24.56616 -24.44181 -24.06829 -23.27268 -22.20065 -20.23945 -19.27043 -19.08972 -18.62274 -18.22794 -17.53131 -17.33288 -17.22419 -16.60601 -16.55290 -16.02016 -15.39805 -15.21702 -15.18150 -14.80128 -14.60698 -14.57880 -14.50157 -14.29219 -14.03128 -13.54105 -13.49202 -13.29381 -13.16543 -13.14674 -13.02142 -12.82467 -12.79907 -12.70179 -12.64165 -12.23392 -11.96903 -11.92294 -11.91486 -11.71188 -11.59037 -11.35044 -10.73977 -10.63450 -10.08490 -9.83361 -8.25220 -6.28519 -0.74072 -0.60552 -0.24964 1.20404 1.33251 1.38984 1.46362 1.48954 1.96861 2.35391 2.37283 2.72385 3.07476 3.26299 3.45503 3.58876 3.66845 3.87790 3.92379 4.10179 4.24947 4.28520 4.31397 4.43421 4.49421 4.51259 4.63888 4.67290 4.68783 4.71126 4.80469 4.84190 4.95465 4.98125 5.05843 5.13953 5.16715 5.20507 5.38168 5.50963 5.59957 5.60076 5.81298 6.34668 6.49764 6.75871 7.32743 8.91910 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.004750 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.524682 B = 5893.927168 C = 7515.304673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 N -0.978 5.978 4 C 0.232 3.768 5 C -0.529 4.529 6 H 0.041 0.959 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.932 3.068 10 H -0.248 1.248 11 H -0.288 1.288 12 H -0.249 1.249 13 S 2.686 3.314 14 O -0.996 6.996 15 O -0.972 6.972 16 C -0.699 4.699 17 C 0.020 3.980 18 C -0.171 4.171 19 C 0.511 3.489 20 O -0.540 6.540 21 O -0.346 6.346 22 C 0.027 3.973 23 C 0.007 3.993 24 C -0.139 4.139 25 C 0.056 3.944 26 C -0.194 4.194 27 H 0.029 0.971 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.265 0.735 35 H 0.125 0.875 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.059 0.941 39 H 0.184 0.816 40 H 0.194 0.806 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.040 -13.118 8.850 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.818 5.818 4 C 0.108 3.892 5 C -0.568 4.568 6 H 0.059 0.941 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.755 3.245 10 H -0.172 1.172 11 H -0.214 1.214 12 H -0.173 1.173 13 S 2.780 3.220 14 O -0.986 6.986 15 O -0.962 6.962 16 C -0.788 4.788 17 C 0.001 3.999 18 C -0.173 4.173 19 C 0.357 3.643 20 O -0.432 6.432 21 O -0.262 6.262 22 C -0.065 4.065 23 C -0.010 4.010 24 C -0.157 4.157 25 C 0.054 3.946 26 C -0.249 4.249 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.078 0.922 39 H 0.201 0.799 40 H 0.211 0.789 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.276 -12.304 9.300 27.095 hybrid contribution 0.160 1.551 -0.872 1.786 sum 22.437 -10.753 8.429 26.269 Atomic orbital electron populations 1.22257 0.97273 1.02558 1.01225 1.21882 0.94413 0.80231 1.05196 1.57094 1.78101 1.24387 1.22172 1.19284 0.95434 0.91589 0.82931 1.21700 0.97054 1.31009 1.07080 0.94082 1.25800 0.98445 0.94791 0.99733 1.70053 1.25880 1.35606 1.27278 0.85952 0.80366 0.78521 0.79695 1.17215 1.21438 1.17253 1.01822 0.74588 0.72575 0.73045 1.93548 1.83782 1.35018 1.86266 1.93456 1.78648 1.69267 1.54827 1.30696 1.26216 1.00063 1.21799 1.20945 0.93397 0.97833 0.87774 1.19184 0.91757 0.93068 1.13326 1.21272 0.82199 0.88754 0.72057 1.90870 1.74406 1.30706 1.47181 1.86494 1.17726 1.38507 1.83477 1.23661 0.96928 0.83345 1.02595 1.22157 1.02736 0.89450 0.86706 1.21738 0.91439 1.01016 1.01493 1.20280 0.96376 0.92536 0.85376 1.22203 1.01620 0.94879 1.06204 0.95136 0.93492 0.88970 0.87633 0.87006 0.95805 0.91927 0.92560 0.85704 0.91959 0.83773 0.92209 0.79862 0.78907 0.86715 0.85257 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 9.75 71.98 0.70 -5.23 16 2 C 0.11 3.14 4.75 86.38 0.41 3.55 16 3 N -0.98 -37.75 2.75 -519.86 -1.43 -39.18 16 4 C 0.23 10.57 4.19 85.63 0.36 10.93 16 5 C -0.53 -30.39 8.85 25.60 0.23 -30.17 16 6 H 0.04 2.64 7.14 -2.91 -0.02 2.62 16 7 C 0.01 0.58 5.47 84.66 0.46 1.04 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.93 43.48 27.47 68.60 1.88 45.36 16 10 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 13 S 2.69 107.82 4.98 -56.49 -0.28 107.54 16 14 O -1.00 -51.02 16.26 -128.00 -2.08 -53.10 16 15 O -0.97 -37.72 14.35 -128.00 -1.84 -39.56 16 16 C -0.70 -22.26 5.90 22.23 0.13 -22.13 16 17 C 0.02 0.69 9.09 22.54 0.20 0.90 16 18 C -0.17 -4.59 5.87 -20.10 -0.12 -4.71 16 19 C 0.51 14.34 7.90 70.33 0.56 14.89 16 20 O -0.54 -19.46 16.14 19.94 0.32 -19.14 16 21 O -0.35 -6.94 9.82 -56.21 -0.55 -7.49 16 22 C 0.03 0.39 10.57 113.37 1.20 1.59 16 23 C 0.01 0.12 9.62 22.54 0.22 0.34 16 24 C -0.14 -2.03 9.65 22.23 0.21 -1.81 16 25 C 0.06 1.22 5.88 -19.80 -0.12 1.11 16 26 C -0.19 -3.18 7.87 71.23 0.56 -2.61 16 27 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.05 1.95 6.56 -2.38 -0.02 1.93 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 30 H 0.11 2.45 8.03 -2.39 -0.02 2.43 16 31 H 0.11 2.57 4.17 -2.39 -0.01 2.56 16 32 H 0.02 1.13 6.90 -2.38 -0.02 1.11 16 33 H 0.06 2.48 7.45 -2.39 -0.02 2.47 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.13 4.98 6.92 -2.91 -0.02 4.96 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.18 1.66 7.61 -2.91 -0.02 1.63 16 40 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.11 1.54 6.54 -2.39 -0.02 1.52 16 42 H 0.13 1.04 8.04 -2.39 -0.02 1.02 16 43 H 0.09 2.03 3.99 -2.39 -0.01 2.02 16 Total: -1.00 -86.84 362.28 2.32 -84.52 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.99 Total: 13.38 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 5.01 Total: -32.31 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -1.13 Total: -99.21 kcal Atomic # 8 Polarization: -115.14 SS G_CDS: -4.15 Total: -119.29 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Atomic # 16 Polarization: 107.82 SS G_CDS: -0.28 Total: 107.54 kcal Total: -86.84 2.32 -84.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264017156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.966 kcal (2) G-P(sol) polarization free energy of solvation -86.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds