Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46951 * 2 1 4 4 C 1.34710 * 116.99821 * 180.02562 * 3 2 1 5 5 O 1.21469 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.47731 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.39627 * 120.15035 * 179.97438 * 6 4 3 8 8 C 1.37944 * 119.84928 * 180.02562 * 7 6 4 9 9 C 1.38361 * 120.14680 * 0.02562 * 8 7 6 10 10 S 1.76207 * 119.84700 * 179.97438 * 9 8 7 11 11 O 1.42095 * 106.39918 * 336.46031 * 10 9 8 12 12 O 1.42098 * 106.40181 * 203.54238 * 10 9 8 13 13 N 1.65597 * 107.21624 * 90.00089 * 10 9 8 14 14 C 1.46499 * 119.99926 * 269.72430 * 13 10 9 15 15 C 1.53001 * 109.47277 * 265.27680 * 14 13 10 16 16 C 1.46506 * 120.00079 * 90.00391 * 13 10 9 17 17 C 1.50701 * 109.46970 * 264.72396 * 16 13 10 18 18 H 1.08005 * 119.99694 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00052 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00074 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00171 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 90.00165 * 21 19 17 23 23 H 1.48496 * 109.47338 * 210.00715 * 21 19 17 24 24 H 1.48504 * 109.46968 * 330.00328 * 21 19 17 25 25 C 1.38368 * 120.30943 * 0.23555 * 9 8 7 26 26 C 1.37952 * 120.14307 * 359.48756 * 25 9 8 27 27 H 1.08991 * 109.47221 * 60.00228 * 1 2 3 28 28 H 1.09002 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47016 * 299.99679 * 1 2 3 30 30 H 1.09001 * 109.47420 * 239.99967 * 2 1 3 31 31 H 1.09005 * 109.47080 * 119.99656 * 2 1 3 32 32 H 1.08001 * 120.07578 * 359.97438 * 7 6 4 33 33 H 1.08001 * 119.92378 * 180.02562 * 8 7 6 34 34 H 1.08991 * 109.47463 * 25.27752 * 14 13 10 35 35 H 1.09000 * 109.46878 * 145.27981 * 14 13 10 36 36 H 1.08995 * 109.46954 * 59.99844 * 15 14 13 37 37 H 1.08996 * 109.47521 * 179.97438 * 15 14 13 38 38 H 1.09005 * 109.47307 * 300.00055 * 15 14 13 39 39 H 1.08999 * 109.46864 * 24.71745 * 16 13 10 40 40 H 1.08999 * 109.46950 * 144.72128 * 16 13 10 41 41 H 0.97000 * 120.00214 * 179.97438 * 20 19 17 42 42 H 1.07993 * 119.93166 * 179.72332 * 25 9 8 43 43 H 1.08003 * 120.06977 * 180.25353 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0005 6 6 3.9141 2.9106 -0.0011 7 6 5.2978 3.0972 -0.0012 8 6 5.8183 4.3747 -0.0012 9 6 4.9725 5.4697 -0.0007 10 16 5.6460 7.0980 0.0000 11 8 6.9542 6.9909 0.5442 12 8 4.6445 7.9461 0.5449 13 7 5.8332 7.5516 -1.5816 14 6 7.0906 7.2727 -2.2797 15 6 8.0035 8.4977 -2.1951 16 6 4.7435 8.2372 -2.2810 17 6 3.9265 7.2297 -3.0480 18 1 4.1926 6.1834 -3.0180 19 6 2.8401 7.6437 -3.7890 20 7 2.1267 6.7644 -4.4580 21 14 2.3803 9.4535 -3.8415 22 1 3.0866 10.1111 -4.9703 23 1 0.9134 9.5864 -4.0307 24 1 2.7755 10.1019 -2.5653 25 6 3.6003 5.2921 0.0048 26 6 3.0664 4.0201 -0.0009 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 5.9591 2.2434 -0.0003 33 1 6.8885 4.5204 -0.0016 34 1 7.5834 6.4195 -1.8138 35 1 6.8830 7.0459 -3.3254 36 1 8.2110 8.7245 -1.1494 37 1 8.9392 8.2901 -2.7140 38 1 7.5107 9.3510 -2.6611 39 1 4.1076 8.7434 -1.5548 40 1 5.1598 8.9697 -2.9725 41 1 1.3621 7.0557 -4.9790 42 1 2.9458 6.1511 0.0097 43 1 1.9951 3.8829 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264094641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -131.971204 kcal Electronic energy + Delta-G solvation = -28060.157658 eV Core-core repulsion = 24004.840718 eV Total energy + Delta-G solvation = -4055.316940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64486 -38.72143 -36.88660 -36.66451 -36.27520 -35.42662 -32.70083 -32.28670 -31.21303 -30.97418 -30.30125 -27.22880 -25.20202 -23.16451 -23.00393 -22.57083 -21.64279 -21.08605 -18.69584 -18.16678 -17.50302 -17.03493 -16.97864 -16.67709 -16.57652 -15.80183 -14.96197 -14.67129 -14.34736 -14.31495 -14.08602 -13.91442 -13.52931 -13.45017 -13.05601 -12.89348 -12.84871 -12.69862 -12.51113 -12.17908 -12.09356 -11.94183 -11.81425 -11.67883 -11.55650 -11.20609 -11.16123 -11.04597 -10.87962 -10.70189 -10.65213 -10.54639 -10.29701 -10.18154 -9.66008 -9.35934 -8.94760 -8.69998 -8.20900 -6.20169 -4.21877 0.32310 0.90272 1.41123 2.34068 2.47677 3.21486 3.29197 3.34397 3.39119 3.71250 4.16617 4.30848 4.50469 4.59611 4.73191 4.77775 4.89425 4.96715 5.05554 5.11941 5.27896 5.35856 5.39130 5.50178 5.57537 5.63732 5.65897 5.69806 5.76653 5.95597 6.00313 6.06981 6.18727 6.20219 6.24656 6.29737 6.44925 6.55633 6.78144 6.82093 7.03135 7.28200 7.47343 7.60821 8.35174 8.83242 9.39737 10.91938 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004187 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.634690 B = 6685.219469 C = 8456.496372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.349 6.349 4 C 0.512 3.488 5 O -0.506 6.506 6 C -0.083 4.083 7 C -0.083 4.083 8 C -0.038 4.038 9 C -0.634 4.634 10 S 2.689 3.311 11 O -0.969 6.969 12 O -0.956 6.956 13 N -0.974 5.974 14 C 0.125 3.875 15 C -0.171 4.171 16 C 0.212 3.788 17 C -0.545 4.545 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.891 5.891 21 Si 0.865 3.135 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.007 4.007 26 C -0.079 4.079 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.266 0.734 42 H 0.153 0.847 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 -7.558 7.830 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.266 6.266 4 C 0.357 3.643 5 O -0.395 6.395 6 C -0.084 4.084 7 C -0.102 4.102 8 C -0.057 4.057 9 C -0.718 4.718 10 S 2.778 3.222 11 O -0.960 6.960 12 O -0.946 6.946 13 N -0.813 5.813 14 C 0.000 4.000 15 C -0.230 4.230 16 C 0.088 3.912 17 C -0.584 4.584 18 H 0.099 0.901 19 C -0.125 4.125 20 N -0.529 5.529 21 Si 0.691 3.309 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.026 4.026 26 C -0.098 4.098 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.170 0.830 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.733 -7.421 8.422 11.553 hybrid contribution -0.734 -0.082 -0.743 1.048 sum 1.999 -7.502 7.679 10.920 Atomic orbital electron populations 1.21819 0.92380 1.02975 1.03898 1.23071 0.95556 0.79814 1.02657 1.86578 1.23540 1.32571 1.83907 1.21207 0.80722 0.89808 0.72524 1.90815 1.60463 1.42418 1.45803 1.19335 0.94331 0.89977 1.04777 1.21240 0.93261 0.97993 0.97673 1.20808 0.99835 0.91010 0.94013 1.31512 1.03786 1.24237 1.12313 1.02048 0.73244 0.73705 0.73224 1.93532 1.38022 1.87179 1.77231 1.93552 1.60486 1.63730 1.76838 1.57186 1.22152 1.71418 1.30510 1.21110 0.82778 0.96861 0.99301 1.22223 0.99232 0.99323 1.02242 1.19682 0.84546 0.93391 0.93538 1.21439 1.11669 0.95729 1.29573 0.90149 1.24833 0.95716 0.97341 0.94622 1.69893 1.18450 1.33937 1.30589 0.87005 0.78304 0.86037 0.79513 1.19976 1.20903 1.18306 1.20984 0.93195 0.98359 0.90066 1.21572 1.00606 0.91478 0.96096 0.91100 0.90194 0.91372 0.91019 0.91174 0.84034 0.83692 0.91297 0.89588 0.92384 0.91951 0.92164 0.93182 0.94495 0.92453 0.82974 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.35 -4.75 9.47 -40.52 -0.38 -5.14 16 4 C 0.51 7.80 7.90 34.61 0.27 8.08 16 5 O -0.51 -8.36 16.14 -19.24 -0.31 -8.67 16 6 C -0.08 -1.29 5.87 -104.98 -0.62 -1.91 16 7 C -0.08 -1.22 9.60 -39.17 -0.38 -1.60 16 8 C -0.04 -0.57 9.50 -39.64 -0.38 -0.95 16 9 C -0.63 -10.93 5.98 -39.49 -0.24 -11.17 16 10 S 2.69 49.51 5.65 -107.50 -0.61 48.90 16 11 O -0.97 -17.77 16.23 -57.17 -0.93 -18.70 16 12 O -0.96 -19.85 15.81 -57.17 -0.90 -20.75 16 13 N -0.97 -18.34 2.77 -115.66 -0.32 -18.66 16 14 C 0.13 1.98 6.06 -4.04 -0.02 1.96 16 15 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 16 C 0.21 4.62 4.51 -5.19 -0.02 4.60 16 17 C -0.55 -13.79 9.94 -34.44 -0.34 -14.13 16 18 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 19 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.89 -25.30 13.96 55.43 0.77 -24.52 16 21 Si 0.87 19.88 27.47 -169.99 -4.67 15.21 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 25 C -0.01 -0.12 9.50 -39.64 -0.38 -0.50 16 26 C -0.08 -1.24 9.62 -39.17 -0.38 -1.62 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.83 7.65 -52.49 -0.40 1.43 16 33 H 0.15 1.86 7.60 -52.49 -0.40 1.47 16 34 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 35 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 1.14 5.97 -51.93 -0.31 0.83 16 40 H 0.04 0.78 7.54 -51.93 -0.39 0.39 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.15 2.65 7.60 -52.49 -0.40 2.25 16 43 H 0.15 2.02 7.61 -52.48 -0.40 1.62 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -31.77 380.09 -9.29 -41.06 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.09 Total: 2.73 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.58 Total: -17.19 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.45 Total: -43.18 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -2.53 Total: -53.25 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Atomic # 16 Polarization: 49.51 SS G_CDS: -0.61 Total: 48.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.77 -9.29 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264094641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.914 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds