Wall clock time and date at job start Sat Apr 11 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46951 * 2 1 4 4 C 1.34710 * 116.99821 * 180.02562 * 3 2 1 5 5 O 1.21469 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.47731 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.39627 * 120.15035 * 179.97438 * 6 4 3 8 8 C 1.37944 * 119.84928 * 180.02562 * 7 6 4 9 9 C 1.38361 * 120.14680 * 0.02562 * 8 7 6 10 10 S 1.76207 * 119.84700 * 179.97438 * 9 8 7 11 11 O 1.42095 * 106.39918 * 336.46031 * 10 9 8 12 12 O 1.42098 * 106.40181 * 203.54238 * 10 9 8 13 13 N 1.65597 * 107.21624 * 90.00089 * 10 9 8 14 14 C 1.46499 * 119.99926 * 269.72430 * 13 10 9 15 15 C 1.53001 * 109.47277 * 265.27680 * 14 13 10 16 16 C 1.46506 * 120.00079 * 90.00391 * 13 10 9 17 17 C 1.50701 * 109.46970 * 264.72396 * 16 13 10 18 18 H 1.08005 * 119.99694 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00052 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00074 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00171 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 90.00165 * 21 19 17 23 23 H 1.48496 * 109.47338 * 210.00715 * 21 19 17 24 24 H 1.48504 * 109.46968 * 330.00328 * 21 19 17 25 25 C 1.38368 * 120.30943 * 0.23555 * 9 8 7 26 26 C 1.37952 * 120.14307 * 359.48756 * 25 9 8 27 27 H 1.08991 * 109.47221 * 60.00228 * 1 2 3 28 28 H 1.09002 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47016 * 299.99679 * 1 2 3 30 30 H 1.09001 * 109.47420 * 239.99967 * 2 1 3 31 31 H 1.09005 * 109.47080 * 119.99656 * 2 1 3 32 32 H 1.08001 * 120.07578 * 359.97438 * 7 6 4 33 33 H 1.08001 * 119.92378 * 180.02562 * 8 7 6 34 34 H 1.08991 * 109.47463 * 25.27752 * 14 13 10 35 35 H 1.09000 * 109.46878 * 145.27981 * 14 13 10 36 36 H 1.08995 * 109.46954 * 59.99844 * 15 14 13 37 37 H 1.08996 * 109.47521 * 179.97438 * 15 14 13 38 38 H 1.09005 * 109.47307 * 300.00055 * 15 14 13 39 39 H 1.08999 * 109.46864 * 24.71745 * 16 13 10 40 40 H 1.08999 * 109.46950 * 144.72128 * 16 13 10 41 41 H 0.97000 * 120.00214 * 179.97438 * 20 19 17 42 42 H 1.07993 * 119.93166 * 179.72332 * 25 9 8 43 43 H 1.08003 * 120.06977 * 180.25353 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0005 6 6 3.9141 2.9106 -0.0011 7 6 5.2978 3.0972 -0.0012 8 6 5.8183 4.3747 -0.0012 9 6 4.9725 5.4697 -0.0007 10 16 5.6460 7.0980 0.0000 11 8 6.9542 6.9909 0.5442 12 8 4.6445 7.9461 0.5449 13 7 5.8332 7.5516 -1.5816 14 6 7.0906 7.2727 -2.2797 15 6 8.0035 8.4977 -2.1951 16 6 4.7435 8.2372 -2.2810 17 6 3.9265 7.2297 -3.0480 18 1 4.1926 6.1834 -3.0180 19 6 2.8401 7.6437 -3.7890 20 7 2.1267 6.7644 -4.4580 21 14 2.3803 9.4535 -3.8415 22 1 3.0866 10.1111 -4.9703 23 1 0.9134 9.5864 -4.0307 24 1 2.7755 10.1019 -2.5653 25 6 3.6003 5.2921 0.0048 26 6 3.0664 4.0201 -0.0009 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 5.9591 2.2434 -0.0003 33 1 6.8885 4.5204 -0.0016 34 1 7.5834 6.4195 -1.8138 35 1 6.8830 7.0459 -3.3254 36 1 8.2110 8.7245 -1.1494 37 1 8.9392 8.2901 -2.7140 38 1 7.5107 9.3510 -2.6611 39 1 4.1076 8.7434 -1.5548 40 1 5.1598 8.9697 -2.9725 41 1 1.3621 7.0557 -4.9790 42 1 2.9458 6.1511 0.0097 43 1 1.9951 3.8829 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264094641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:58 Heat of formation + Delta-G solvation = -151.279237 kcal Electronic energy + Delta-G solvation = -28060.994917 eV Core-core repulsion = 24004.840718 eV Total energy + Delta-G solvation = -4056.154199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80631 -39.93991 -38.38959 -37.80104 -37.76737 -36.94519 -34.63089 -33.32290 -32.32475 -32.12736 -31.77305 -28.92406 -26.37188 -24.56864 -24.19866 -23.69030 -23.15248 -22.26578 -20.10091 -19.37940 -19.03765 -18.72766 -18.41460 -17.91640 -17.71584 -17.28453 -16.39222 -16.02963 -15.89951 -15.51202 -15.30446 -15.09739 -14.79451 -14.70518 -14.53553 -14.22217 -14.07513 -13.94264 -13.75199 -13.64528 -13.44043 -13.19950 -13.09121 -13.01282 -12.70270 -12.62886 -12.61531 -12.39288 -12.26767 -12.21657 -11.95810 -11.76359 -11.64904 -11.61405 -11.56719 -10.73833 -10.64262 -10.19996 -9.77320 -8.24111 -6.28628 -0.96537 -0.53444 0.16207 1.10603 1.39926 1.42389 1.44699 1.53446 1.96307 2.38841 2.40980 2.73549 3.11014 3.22520 3.39753 3.66421 3.75058 3.95424 3.97036 4.01079 4.12831 4.20284 4.29143 4.42281 4.46618 4.50376 4.65459 4.74734 4.80349 4.86904 4.89118 4.91198 4.97002 5.01609 5.04512 5.05661 5.09135 5.31327 5.44621 5.45670 5.51253 5.56989 5.79744 6.34065 6.45766 6.77141 7.35920 8.90901 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004187 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.634690 B = 6685.219469 C = 8456.496372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.516 3.484 5 O -0.521 6.521 6 C -0.090 4.090 7 C -0.079 4.079 8 C -0.036 4.036 9 C -0.645 4.645 10 S 2.699 3.301 11 O -0.967 6.967 12 O -0.984 6.984 13 N -0.979 5.979 14 C 0.113 3.887 15 C -0.169 4.169 16 C 0.217 3.783 17 C -0.534 4.534 18 H 0.051 0.949 19 C 0.025 3.975 20 N -0.937 5.937 21 Si 0.920 3.080 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.246 1.246 25 C -0.029 4.029 26 C -0.082 4.082 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.266 0.734 42 H 0.142 0.858 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.509 -7.651 8.182 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.272 6.272 4 C 0.361 3.639 5 O -0.412 6.412 6 C -0.091 4.091 7 C -0.098 4.098 8 C -0.055 4.055 9 C -0.732 4.732 10 S 2.790 3.210 11 O -0.958 6.958 12 O -0.974 6.974 13 N -0.817 5.817 14 C -0.011 4.011 15 C -0.227 4.227 16 C 0.093 3.907 17 C -0.574 4.574 18 H 0.069 0.931 19 C -0.174 4.174 20 N -0.577 5.577 21 Si 0.744 3.256 22 H -0.187 1.187 23 H -0.212 1.212 24 H -0.170 1.170 25 C -0.048 4.048 26 C -0.101 4.101 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.181 0.819 33 H 0.189 0.811 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.160 0.840 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.741 -7.490 8.785 12.135 hybrid contribution -1.019 -0.219 -0.823 1.328 sum 2.722 -7.709 7.961 11.411 Atomic orbital electron populations 1.21853 0.90354 1.04638 1.03678 1.23430 0.97150 0.78308 1.03135 1.86579 1.22550 1.34670 1.83361 1.21109 0.81238 0.89350 0.72195 1.90801 1.60917 1.42714 1.46723 1.19549 0.94903 0.90235 1.04434 1.21537 0.93287 0.98561 0.96395 1.21140 1.00913 0.90506 0.92947 1.31362 1.03981 1.24125 1.13728 1.01589 0.72818 0.73718 0.72864 1.93524 1.37791 1.87327 1.77136 1.93510 1.61347 1.65094 1.77470 1.57163 1.22449 1.71557 1.30524 1.21416 0.81971 0.98754 0.98984 1.22214 0.99989 0.98159 1.02388 1.19447 0.85092 0.92825 0.93340 1.21610 1.11649 0.95156 1.28941 0.93117 1.25587 0.95891 1.01361 0.94552 1.70025 1.19417 1.36044 1.32245 0.86110 0.77862 0.81280 0.80325 1.18719 1.21178 1.16981 1.21021 0.93498 0.98763 0.91509 1.21693 1.01461 0.91070 0.95863 0.91803 0.87560 0.91074 0.91024 0.90251 0.81853 0.81109 0.89235 0.90103 0.92768 0.89093 0.92505 0.93825 0.93058 0.92534 0.84003 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.05 1.04 6.19 71.98 0.45 1.48 16 3 O -0.36 -9.44 9.47 -56.20 -0.53 -9.98 16 4 C 0.52 15.34 7.90 70.33 0.56 15.90 16 5 O -0.52 -16.67 16.14 19.94 0.32 -16.35 16 6 C -0.09 -2.75 5.87 -20.10 -0.12 -2.87 16 7 C -0.08 -2.23 9.60 22.54 0.22 -2.01 16 8 C -0.04 -1.05 9.50 22.23 0.21 -0.84 16 9 C -0.65 -22.11 5.98 22.33 0.13 -21.97 16 10 S 2.70 97.87 5.65 -56.49 -0.32 97.55 16 11 O -0.97 -33.95 16.23 -128.00 -2.08 -36.03 16 12 O -0.98 -41.04 15.81 -128.00 -2.02 -43.06 16 13 N -0.98 -36.04 2.77 -519.85 -1.44 -37.48 16 14 C 0.11 3.40 6.06 86.38 0.52 3.92 16 15 C -0.17 -4.29 10.24 71.98 0.74 -3.55 16 16 C 0.22 9.37 4.51 85.63 0.39 9.75 16 17 C -0.53 -27.29 9.94 25.60 0.25 -27.04 16 18 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 19 C 0.03 1.35 5.47 84.65 0.46 1.82 16 20 N -0.94 -54.31 13.96 21.44 0.30 -54.01 16 21 Si 0.92 40.63 27.47 68.60 1.88 42.51 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 25 C -0.03 -1.02 9.50 22.23 0.21 -0.81 16 26 C -0.08 -2.62 9.62 22.54 0.22 -2.41 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.16 3.86 7.65 -2.91 -0.02 3.83 16 33 H 0.17 3.96 7.60 -2.91 -0.02 3.94 16 34 H 0.09 2.28 7.61 -2.39 -0.02 2.26 16 35 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.04 1.96 5.97 -2.39 -0.01 1.94 16 40 H 0.05 2.07 7.54 -2.39 -0.02 2.06 16 41 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.14 5.20 7.60 -2.91 -0.02 5.18 16 43 H 0.16 4.47 7.61 -2.91 -0.02 4.44 16 Total: -1.00 -67.80 380.09 2.05 -65.75 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.96 Total: 21.09 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 4.98 Total: -29.99 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -1.14 Total: -91.49 kcal Atomic # 8 Polarization: -101.11 SS G_CDS: -4.31 Total: -105.42 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.88 Total: 42.51 kcal Atomic # 16 Polarization: 97.87 SS G_CDS: -0.32 Total: 97.55 kcal Total: -67.80 2.05 -65.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264094641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.527 kcal (2) G-P(sol) polarization free energy of solvation -67.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds