Wall clock time and date at job start Sat Apr 11 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47140 * 2 1 4 4 C 1.46499 * 120.00017 * 274.99930 * 3 2 1 5 5 C 1.50707 * 109.46941 * 275.00075 * 4 3 2 6 6 H 1.07996 * 120.00055 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99657 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00239 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99892 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47264 * 60.00561 * 9 7 5 11 11 H 1.48504 * 109.47406 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47485 * 300.00348 * 9 7 5 13 13 S 1.65599 * 120.00343 * 95.00071 * 3 2 1 14 14 O 1.42093 * 106.40637 * 156.45916 * 13 3 2 15 15 O 1.42111 * 106.40023 * 23.53538 * 13 3 2 16 16 C 1.76200 * 107.21636 * 270.00331 * 13 3 2 17 17 C 1.38259 * 119.88801 * 270.01478 * 16 13 3 18 18 C 1.38341 * 120.21832 * 180.02562 * 17 16 13 19 19 C 1.38469 * 119.71377 * 359.93276 * 18 17 16 20 20 C 1.38749 * 120.06553 * 0.03290 * 19 18 17 21 21 C 1.38341 * 119.89525 * 89.99764 * 16 13 3 22 22 O 1.36470 * 119.61421 * 179.97438 * 20 19 18 23 23 C 1.42720 * 115.86865 * 68.25704 * 22 20 19 24 24 C 1.52069 * 110.87218 * 275.53108 * 23 22 20 25 25 C 1.52064 * 112.30179 * 64.86695 * 24 23 22 26 26 O 1.36462 * 120.31645 * 180.02562 * 19 18 17 27 27 H 1.09003 * 109.47105 * 300.00025 * 1 2 3 28 28 H 1.09002 * 109.47235 * 59.99799 * 1 2 3 29 29 H 1.08994 * 109.47414 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47252 * 239.99828 * 2 1 3 31 31 H 1.09002 * 109.47108 * 119.99425 * 2 1 3 32 32 H 1.08999 * 109.47289 * 34.99585 * 4 3 2 33 33 H 1.08994 * 109.47131 * 155.00044 * 4 3 2 34 34 H 0.97006 * 120.00203 * 179.97438 * 8 7 5 35 35 H 1.07995 * 119.89213 * 0.02562 * 17 16 13 36 36 H 1.07999 * 120.14515 * 180.02562 * 18 17 16 37 37 H 1.07996 * 120.14277 * 0.02562 * 21 16 13 38 38 H 1.08998 * 109.08239 * 155.22677 * 23 22 20 39 39 H 1.09000 * 109.25291 * 35.94461 * 23 22 20 40 40 H 1.09002 * 108.90216 * 304.16941 * 24 23 22 41 41 H 1.08997 * 108.89925 * 185.56662 * 24 23 22 42 42 H 1.09008 * 109.21301 * 55.57052 * 25 24 23 43 43 H 1.08995 * 109.21631 * 174.90216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8525 2.3605 -3.0848 8 7 3.0276 3.1855 -3.6920 9 14 5.5095 1.9646 -3.8510 10 1 5.6003 0.5046 -4.1070 11 1 5.6513 2.7019 -5.1323 12 1 6.5944 2.3728 -2.9229 13 16 2.4122 2.1203 1.4286 14 8 3.3284 3.1571 1.1049 15 8 2.7095 1.0799 2.3499 16 6 0.9555 2.9118 2.0253 17 6 0.6824 4.2174 1.6612 18 6 -0.4591 4.8457 2.1261 19 6 -1.3292 4.1608 2.9575 20 6 -1.0555 2.8504 3.3223 21 6 0.0885 2.2249 2.8562 22 8 -1.9191 2.1843 4.1426 23 6 -3.1951 1.8742 3.5834 24 6 -4.1484 3.0508 3.7234 25 6 -3.6952 4.2594 2.9195 26 8 -2.4590 4.7685 3.4229 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 3.2795 3.5880 -4.5379 35 1 1.3624 4.7485 1.0118 36 1 -0.6714 5.8654 1.8407 37 1 0.3030 1.2052 3.1399 38 1 -3.6116 1.0113 4.1028 39 1 -3.0756 1.6331 2.5271 40 1 -4.2125 3.3300 4.7750 41 1 -5.1367 2.7474 3.3781 42 1 -3.5653 3.9687 1.8770 43 1 -4.4559 5.0376 2.9821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264115004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:01 Heat of formation + Delta-G solvation = -117.129392 kcal Electronic energy + Delta-G solvation = -28825.663789 eV Core-core repulsion = 24770.990439 eV Total energy + Delta-G solvation = -4054.673350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07973 -37.80469 -37.73739 -36.71162 -36.10315 -35.22395 -33.22633 -32.69441 -30.95049 -30.02248 -29.43128 -26.88359 -26.64284 -23.45835 -23.13947 -22.56902 -21.92289 -21.68112 -19.09808 -18.30761 -17.54899 -17.26073 -16.71562 -16.53082 -16.08041 -15.76719 -15.66564 -15.36763 -14.49933 -14.42492 -14.22084 -14.16437 -13.94724 -13.85477 -13.40458 -13.20682 -12.89331 -12.44969 -12.22839 -12.11403 -11.98440 -11.74147 -11.68768 -11.46987 -11.38544 -11.20329 -11.01422 -10.92977 -10.81822 -10.66835 -10.48674 -10.44059 -10.16172 -10.00850 -9.78054 -9.14572 -8.80230 -8.45564 -8.12025 -6.08146 -4.12075 0.54424 0.97391 1.05088 2.93177 3.16498 3.33620 3.37284 3.41793 3.50318 3.76427 4.28156 4.30174 4.34463 4.44286 4.59290 4.75324 4.81290 4.90414 4.97337 5.06607 5.14247 5.24668 5.27390 5.33472 5.36710 5.39520 5.58306 5.64110 5.68122 5.71857 5.74517 5.94098 6.01759 6.07345 6.23306 6.35748 6.53487 6.59194 6.82545 7.19003 7.31582 7.35268 7.55873 7.89249 8.17564 8.90103 9.53264 11.00371 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.003476 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.490167 B = 8053.689243 C = 8268.591359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.979 5.979 4 C 0.256 3.744 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.685 3.315 14 O -0.938 6.938 15 O -0.973 6.973 16 C -0.666 4.666 17 C -0.005 4.005 18 C -0.138 4.138 19 C 0.112 3.888 20 C 0.039 3.961 21 C -0.017 4.017 22 O -0.315 6.315 23 C 0.056 3.944 24 C -0.187 4.187 25 C 0.060 3.940 26 O -0.321 6.321 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 -1.155 11.217 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 N -0.819 5.819 4 C 0.134 3.866 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.772 3.228 14 O -0.928 6.928 15 O -0.963 6.963 16 C -0.749 4.749 17 C -0.024 4.024 18 C -0.157 4.157 19 C 0.067 3.933 20 C -0.006 4.006 21 C -0.036 4.036 22 O -0.232 6.232 23 C -0.019 4.019 24 C -0.225 4.225 25 C -0.015 4.015 26 O -0.238 6.238 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.123 0.877 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.220 -0.928 11.768 19.261 hybrid contribution -0.232 0.072 -0.747 0.786 sum -15.453 -0.856 11.020 18.999 Atomic orbital electron populations 1.22286 0.97433 1.01566 1.01992 1.21208 0.92969 0.82943 1.03934 1.57446 1.81097 1.21176 1.22166 1.19106 0.97584 0.91235 0.78639 1.21449 1.02016 1.27870 1.05545 0.92044 1.24910 0.97350 0.94783 0.96834 1.69905 1.36153 1.30188 1.17264 0.86581 0.84215 0.78421 0.78389 1.20177 1.21220 1.19926 1.02337 0.73950 0.73675 0.72868 1.93612 1.58064 1.57796 1.83294 1.93505 1.83023 1.56443 1.63308 1.31601 1.24253 1.06854 1.12233 1.21010 0.94828 0.92177 0.94409 1.21241 0.95595 1.01565 0.97274 1.19384 0.88929 0.90862 0.94085 1.19114 0.93541 0.90824 0.97107 1.20795 0.91722 0.99781 0.91338 1.86378 1.24371 1.74836 1.37574 1.22648 0.82568 0.97237 0.99490 1.22481 1.00363 0.96287 1.03346 1.22661 0.84762 0.97014 0.97050 1.86330 1.12162 1.58312 1.66962 0.93611 0.91844 0.92017 0.89250 0.90254 0.94436 0.94329 0.92629 0.82850 0.83856 0.83266 0.87707 0.92201 0.89774 0.89036 0.92091 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.12 1.91 6.40 -4.04 -0.03 1.88 16 3 N -0.98 -19.46 2.77 -115.66 -0.32 -19.78 16 4 C 0.26 6.10 5.10 -5.19 -0.03 6.07 16 5 C -0.53 -14.34 9.38 -34.44 -0.32 -14.66 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 S 2.68 52.69 5.64 -107.50 -0.61 52.09 16 14 O -0.94 -21.61 16.24 -57.17 -0.93 -22.53 16 15 O -0.97 -19.68 15.83 -57.17 -0.91 -20.59 16 16 C -0.67 -11.00 5.98 -39.54 -0.24 -11.23 16 17 C -0.01 -0.08 9.51 -39.54 -0.38 -0.46 16 18 C -0.14 -1.87 10.01 -39.46 -0.39 -2.27 16 19 C 0.11 1.56 5.73 -39.31 -0.23 1.33 16 20 C 0.04 0.56 5.72 -39.31 -0.23 0.33 16 21 C -0.02 -0.26 8.37 -39.46 -0.33 -0.59 16 22 O -0.32 -4.15 10.16 -36.70 -0.37 -4.53 16 23 C 0.06 0.50 6.49 36.68 0.24 0.74 16 24 C -0.19 -1.39 5.93 -27.68 -0.16 -1.55 16 25 C 0.06 0.52 6.51 36.68 0.24 0.76 16 26 O -0.32 -4.05 10.16 -36.67 -0.37 -4.42 16 27 H 0.04 0.58 7.00 -51.93 -0.36 0.22 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 31 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 32 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.15 2.33 7.60 -52.49 -0.40 1.93 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.15 2.10 7.62 -52.49 -0.40 1.70 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.51 7.93 -51.92 -0.41 0.10 16 43 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -33.29 367.64 -9.90 -43.20 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.09 Total: -0.73 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.57 Total: -19.95 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.42 Total: -44.40 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -2.58 Total: -52.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 52.69 SS G_CDS: -0.61 Total: 52.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.29 -9.90 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264115004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.933 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds