Wall clock time and date at job start Sat Apr 11 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47140 * 2 1 4 4 C 1.46499 * 120.00017 * 274.99930 * 3 2 1 5 5 C 1.50707 * 109.46941 * 275.00075 * 4 3 2 6 6 H 1.07996 * 120.00055 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99657 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00239 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99892 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47264 * 60.00561 * 9 7 5 11 11 H 1.48504 * 109.47406 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47485 * 300.00348 * 9 7 5 13 13 S 1.65599 * 120.00343 * 95.00071 * 3 2 1 14 14 O 1.42093 * 106.40637 * 156.45916 * 13 3 2 15 15 O 1.42111 * 106.40023 * 23.53538 * 13 3 2 16 16 C 1.76200 * 107.21636 * 270.00331 * 13 3 2 17 17 C 1.38259 * 119.88801 * 270.01478 * 16 13 3 18 18 C 1.38341 * 120.21832 * 180.02562 * 17 16 13 19 19 C 1.38469 * 119.71377 * 359.93276 * 18 17 16 20 20 C 1.38749 * 120.06553 * 0.03290 * 19 18 17 21 21 C 1.38341 * 119.89525 * 89.99764 * 16 13 3 22 22 O 1.36470 * 119.61421 * 179.97438 * 20 19 18 23 23 C 1.42720 * 115.86865 * 68.25704 * 22 20 19 24 24 C 1.52069 * 110.87218 * 275.53108 * 23 22 20 25 25 C 1.52064 * 112.30179 * 64.86695 * 24 23 22 26 26 O 1.36462 * 120.31645 * 180.02562 * 19 18 17 27 27 H 1.09003 * 109.47105 * 300.00025 * 1 2 3 28 28 H 1.09002 * 109.47235 * 59.99799 * 1 2 3 29 29 H 1.08994 * 109.47414 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47252 * 239.99828 * 2 1 3 31 31 H 1.09002 * 109.47108 * 119.99425 * 2 1 3 32 32 H 1.08999 * 109.47289 * 34.99585 * 4 3 2 33 33 H 1.08994 * 109.47131 * 155.00044 * 4 3 2 34 34 H 0.97006 * 120.00203 * 179.97438 * 8 7 5 35 35 H 1.07995 * 119.89213 * 0.02562 * 17 16 13 36 36 H 1.07999 * 120.14515 * 180.02562 * 18 17 16 37 37 H 1.07996 * 120.14277 * 0.02562 * 21 16 13 38 38 H 1.08998 * 109.08239 * 155.22677 * 23 22 20 39 39 H 1.09000 * 109.25291 * 35.94461 * 23 22 20 40 40 H 1.09002 * 108.90216 * 304.16941 * 24 23 22 41 41 H 1.08997 * 108.89925 * 185.56662 * 24 23 22 42 42 H 1.09008 * 109.21301 * 55.57052 * 25 24 23 43 43 H 1.08995 * 109.21631 * 174.90216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8525 2.3605 -3.0848 8 7 3.0276 3.1855 -3.6920 9 14 5.5095 1.9646 -3.8510 10 1 5.6003 0.5046 -4.1070 11 1 5.6513 2.7019 -5.1323 12 1 6.5944 2.3728 -2.9229 13 16 2.4122 2.1203 1.4286 14 8 3.3284 3.1571 1.1049 15 8 2.7095 1.0799 2.3499 16 6 0.9555 2.9118 2.0253 17 6 0.6824 4.2174 1.6612 18 6 -0.4591 4.8457 2.1261 19 6 -1.3292 4.1608 2.9575 20 6 -1.0555 2.8504 3.3223 21 6 0.0885 2.2249 2.8562 22 8 -1.9191 2.1843 4.1426 23 6 -3.1951 1.8742 3.5834 24 6 -4.1484 3.0508 3.7234 25 6 -3.6952 4.2594 2.9195 26 8 -2.4590 4.7685 3.4229 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 3.2795 3.5880 -4.5379 35 1 1.3624 4.7485 1.0118 36 1 -0.6714 5.8654 1.8407 37 1 0.3030 1.2052 3.1399 38 1 -3.6116 1.0113 4.1028 39 1 -3.0756 1.6331 2.5271 40 1 -4.2125 3.3300 4.7750 41 1 -5.1367 2.7474 3.3781 42 1 -3.5653 3.9687 1.8770 43 1 -4.4559 5.0376 2.9821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264115004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:00 Heat of formation + Delta-G solvation = -139.381601 kcal Electronic energy + Delta-G solvation = -28826.628717 eV Core-core repulsion = 24770.990439 eV Total energy + Delta-G solvation = -4055.638279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.05227 -38.84068 -38.67628 -38.33450 -37.69225 -36.88404 -34.68989 -33.98136 -32.08072 -31.50376 -30.50479 -28.49352 -27.64527 -24.93786 -24.50625 -23.72593 -23.13484 -22.65991 -20.25582 -19.58444 -18.93815 -18.36254 -18.30777 -18.16579 -17.44538 -17.12378 -16.57039 -16.49068 -16.26498 -15.46840 -15.29721 -15.23881 -15.03378 -14.97731 -14.72629 -14.59878 -14.10776 -13.84973 -13.67508 -13.39596 -13.34550 -13.20921 -13.11620 -13.01264 -12.75191 -12.66701 -12.60488 -12.23420 -12.13821 -12.02676 -11.85541 -11.73790 -11.61269 -11.46621 -11.09951 -10.55608 -10.26964 -9.90076 -9.78304 -8.16983 -6.27904 -0.69703 -0.47052 -0.07170 1.42427 1.45808 1.52499 1.81259 2.15739 2.28742 2.44158 2.59780 2.79336 3.14569 3.30603 3.52835 3.68164 3.80295 3.91121 4.00231 4.06115 4.14323 4.18367 4.30777 4.33565 4.44345 4.48618 4.54126 4.62197 4.69597 4.76456 4.79327 4.85082 4.96042 5.03547 5.06243 5.16056 5.20157 5.24569 5.40452 5.53316 5.74130 5.94411 5.95740 6.14008 6.34818 6.79663 7.40537 8.90327 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.003476 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.490167 B = 8053.689243 C = 8268.591359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.984 5.984 4 C 0.271 3.729 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.016 3.984 8 N -0.922 5.922 9 Si 0.952 3.048 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.278 1.278 13 S 2.693 3.307 14 O -0.982 6.982 15 O -0.984 6.984 16 C -0.669 4.669 17 C -0.018 4.018 18 C -0.133 4.133 19 C 0.117 3.883 20 C 0.041 3.959 21 C -0.022 4.022 22 O -0.331 6.331 23 C 0.043 3.957 24 C -0.182 4.182 25 C 0.048 3.952 26 O -0.334 6.334 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.130 0.870 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.064 0.936 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.253 -1.660 11.847 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.823 5.823 4 C 0.148 3.852 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.204 1.204 13 S 2.785 3.215 14 O -0.972 6.972 15 O -0.974 6.974 16 C -0.757 4.757 17 C -0.038 4.038 18 C -0.152 4.152 19 C 0.072 3.928 20 C -0.005 4.005 21 C -0.042 4.042 22 O -0.248 6.248 23 C -0.031 4.031 24 C -0.220 4.220 25 C -0.026 4.026 26 O -0.251 6.251 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.175 0.825 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.483 -1.484 12.388 21.478 hybrid contribution 0.281 0.235 -0.820 0.898 sum -17.202 -1.249 11.568 20.767 Atomic orbital electron populations 1.22218 0.94817 1.03541 1.01906 1.21472 0.95242 0.81135 1.04077 1.57298 1.81727 1.22476 1.20849 1.18671 0.95993 0.90612 0.79917 1.21811 1.03282 1.27759 1.05974 0.92829 1.25668 1.00598 0.94727 0.97387 1.69990 1.37661 1.30917 1.17653 0.85698 0.80030 0.78890 0.77650 1.18917 1.20277 1.20351 1.01638 0.74371 0.72990 0.72521 1.93551 1.60770 1.58983 1.83926 1.93476 1.83857 1.56871 1.63239 1.30920 1.23430 1.07355 1.14003 1.21056 0.95722 0.92016 0.94982 1.21429 0.94501 1.02531 0.96734 1.19502 0.89505 0.90570 0.93187 1.19150 0.93514 0.91155 0.96632 1.20855 0.91882 1.00140 0.91323 1.86348 1.25840 1.74731 1.37889 1.23041 0.81081 0.98937 1.00072 1.22477 1.01462 0.95054 1.02983 1.23061 0.83517 0.98620 0.97393 1.86309 1.12866 1.58714 1.67179 0.92810 0.92795 0.88954 0.89957 0.89238 0.94953 0.96085 0.92412 0.83485 0.81402 0.82537 0.85250 0.91812 0.90233 0.85581 0.91725 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 10.24 71.98 0.74 -3.54 16 2 C 0.11 3.49 6.40 86.38 0.55 4.04 16 3 N -0.98 -40.13 2.77 -519.85 -1.44 -41.57 16 4 C 0.27 13.38 5.10 85.64 0.44 13.81 16 5 C -0.55 -30.49 9.38 25.60 0.24 -30.25 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.02 0.89 5.46 84.65 0.46 1.35 16 8 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 S 2.69 108.95 5.64 -56.49 -0.32 108.63 16 14 O -0.98 -47.44 16.24 -128.00 -2.08 -49.52 16 15 O -0.98 -40.46 15.83 -128.00 -2.03 -42.48 16 16 C -0.67 -22.32 5.98 22.30 0.13 -22.19 16 17 C -0.02 -0.57 9.51 22.30 0.21 -0.36 16 18 C -0.13 -3.48 10.01 22.35 0.22 -3.25 16 19 C 0.12 3.07 5.73 22.45 0.13 3.20 16 20 C 0.04 1.11 5.72 22.45 0.13 1.24 16 21 C -0.02 -0.66 8.37 22.35 0.19 -0.47 16 22 O -0.33 -8.04 10.16 -84.20 -0.86 -8.90 16 23 C 0.04 0.64 6.49 71.68 0.47 1.10 16 24 C -0.18 -2.06 5.93 29.98 0.18 -1.88 16 25 C 0.05 0.67 6.51 71.67 0.47 1.14 16 26 O -0.33 -7.62 10.16 -84.10 -0.85 -8.47 16 27 H 0.05 1.29 7.00 -2.39 -0.02 1.27 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 31 H 0.09 2.74 6.91 -2.39 -0.02 2.73 16 32 H 0.03 1.61 8.11 -2.39 -0.02 1.59 16 33 H 0.02 1.11 7.61 -2.39 -0.02 1.09 16 34 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 35 H 0.15 4.70 7.60 -2.91 -0.02 4.68 16 36 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.16 4.29 7.62 -2.91 -0.02 4.26 16 38 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 0.58 8.14 -2.39 -0.02 0.57 16 42 H 0.06 0.88 7.93 -2.38 -0.02 0.86 16 43 H 0.13 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -72.66 367.64 0.31 -72.35 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.02 Total: 12.65 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 4.55 Total: -36.06 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -1.15 Total: -94.26 kcal Atomic # 8 Polarization: -103.56 SS G_CDS: -5.82 Total: -109.37 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 108.95 SS G_CDS: -0.32 Total: 108.63 kcal Total: -72.66 0.31 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264115004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.029 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds