Wall clock time and date at job start Sat Apr 11 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45200 * 109.46600 * 2 1 4 4 C 1.34720 * 116.99536 * 179.97438 * 3 2 1 5 5 O 1.21471 * 120.00071 * 0.02562 * 4 3 2 6 6 C 1.47724 * 119.99617 * 179.97438 * 4 3 2 7 7 C 1.39644 * 120.15323 * 359.97438 * 6 4 3 8 8 C 1.37919 * 119.84790 * 180.02562 * 7 6 4 9 9 C 1.38387 * 120.15212 * 359.97438 * 8 7 6 10 10 C 1.38346 * 120.30203 * 359.97438 * 9 8 7 11 11 S 1.76206 * 119.92460 * 179.97438 * 10 9 8 12 12 O 1.42098 * 106.39951 * 23.54132 * 11 10 9 13 13 O 1.42103 * 106.39997 * 156.46154 * 11 10 9 14 14 N 1.65600 * 107.21719 * 270.00243 * 11 10 9 15 15 C 1.46508 * 119.99780 * 90.00134 * 14 11 10 16 16 C 1.46494 * 119.99991 * 269.99865 * 14 11 10 17 17 H 1.08998 * 109.47421 * 359.97438 * 16 14 11 18 18 C 1.53004 * 109.47262 * 240.00017 * 16 14 11 19 19 C 1.50701 * 109.47066 * 120.00600 * 16 14 11 20 20 H 1.08001 * 120.00029 * 359.97438 * 19 16 14 21 21 C 1.37881 * 119.99915 * 180.02562 * 19 16 14 22 22 N 1.31505 * 120.00072 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99802 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47219 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47184 * 119.99749 * 23 21 19 26 26 H 1.48499 * 109.46921 * 239.99659 * 23 21 19 27 27 C 1.37965 * 120.15280 * 0.02562 * 10 9 8 28 28 H 1.08997 * 109.47256 * 300.00149 * 1 2 3 29 29 H 1.08992 * 109.46724 * 60.00421 * 1 2 3 30 30 H 1.09005 * 109.46647 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47256 * 239.99851 * 2 1 3 32 32 H 1.08997 * 109.46708 * 120.00054 * 2 1 3 33 33 H 1.08003 * 120.07449 * 359.97438 * 7 6 4 34 34 H 1.08005 * 119.92645 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.85038 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.46819 * 89.99849 * 15 14 11 37 37 H 1.08994 * 109.46687 * 209.99380 * 15 14 11 38 38 H 1.08996 * 109.47102 * 329.99667 * 15 14 11 39 39 H 1.09004 * 109.46868 * 60.00129 * 18 16 14 40 40 H 1.08992 * 109.47529 * 179.97438 * 18 16 14 41 41 H 1.09000 * 109.47333 * 300.00444 * 18 16 14 42 42 H 0.97007 * 120.00177 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.07710 * 180.27513 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0895 0.5822 0.0005 6 6 3.9141 2.9107 0.0000 7 6 3.0663 4.0203 -0.0016 8 6 3.6001 5.2920 -0.0026 9 6 4.9725 5.4697 -0.0015 10 6 5.8182 4.3749 0.0011 11 16 7.5641 4.6127 0.0018 12 8 7.7926 5.9062 0.5439 13 8 8.1300 3.4296 0.5489 14 7 8.0508 4.6759 -1.5798 15 6 8.0949 5.9610 -2.2819 16 6 8.4374 3.4468 -2.2769 17 1 8.3415 2.5989 -1.5987 18 6 9.8890 3.5618 -2.7466 19 6 7.5386 3.2415 -3.4689 20 1 6.7572 3.9550 -3.6854 21 6 7.7130 2.1421 -4.2827 22 7 8.6641 1.2731 -4.0189 23 14 6.5984 1.8873 -5.7599 24 1 5.6158 2.9981 -5.8361 25 1 7.4165 1.8636 -6.9990 26 1 5.8766 0.5973 -5.6186 27 6 5.2977 3.0972 0.0022 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9950 3.8830 -0.0029 34 1 2.9456 6.1511 -0.0035 35 1 5.3853 6.4677 -0.0019 36 1 9.0783 6.4128 -2.1513 37 1 7.9063 5.8017 -3.3435 38 1 7.3330 6.6247 -1.8730 39 1 10.5392 3.7103 -1.8844 40 1 10.1768 2.6472 -3.2648 41 1 9.9854 4.4097 -3.4247 42 1 8.7871 0.4998 -4.5916 43 1 5.9590 2.2433 0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264142142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:03 Heat of formation + Delta-G solvation = -130.109805 kcal Electronic energy + Delta-G solvation = -28433.297139 eV Core-core repulsion = 24378.060916 eV Total energy + Delta-G solvation = -4055.236223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57522 -38.81128 -36.80607 -36.55536 -36.20301 -35.34308 -32.63076 -32.29849 -31.24620 -31.16751 -29.11641 -25.58198 -25.19659 -24.99774 -23.35808 -22.77936 -21.13283 -20.77163 -19.01447 -17.80223 -17.22434 -16.90323 -16.61671 -16.46661 -16.06223 -15.80531 -15.56547 -14.95132 -14.40915 -14.31293 -14.10012 -13.57352 -13.50365 -13.27450 -12.99509 -12.95315 -12.70403 -12.29289 -12.08437 -12.01893 -11.95459 -11.82082 -11.69162 -11.50091 -11.41259 -11.23524 -11.00035 -10.88626 -10.71728 -10.65318 -10.46514 -10.42485 -10.22421 -10.09269 -9.49719 -9.25309 -9.14181 -8.49639 -8.01024 -6.10865 -4.19410 0.50517 0.88534 1.08349 2.43608 2.52117 3.23056 3.31492 3.33052 3.42817 3.70560 4.24534 4.34666 4.47393 4.59045 4.74187 4.78065 4.86975 4.91185 5.07166 5.08755 5.20403 5.31429 5.43014 5.55392 5.56860 5.57290 5.72157 5.74638 6.01186 6.08172 6.11402 6.13320 6.27524 6.34140 6.63011 6.65833 6.84529 6.87040 7.08771 7.40423 7.59824 7.72793 7.75719 8.02382 8.22846 8.83428 9.47342 10.94312 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.005079 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.242070 B = 5511.807107 C = 7453.724048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.510 3.490 5 O -0.492 6.492 6 C -0.148 4.148 7 C -0.017 4.017 8 C -0.157 4.157 9 C 0.011 3.989 10 C -0.678 4.678 11 S 2.684 3.316 12 O -0.973 6.973 13 O -0.954 6.954 14 N -0.978 5.978 15 C 0.104 3.896 16 C 0.265 3.735 17 H 0.062 0.938 18 C -0.144 4.144 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.284 1.284 27 C 0.059 3.941 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.014 0.986 40 H 0.094 0.906 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 5.179 6.717 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.354 3.646 5 O -0.380 6.380 6 C -0.150 4.150 7 C -0.036 4.036 8 C -0.176 4.176 9 C -0.008 4.008 10 C -0.762 4.762 11 S 2.773 3.227 12 O -0.963 6.963 13 O -0.944 6.944 14 N -0.818 5.818 15 C -0.042 4.042 16 C 0.162 3.838 17 H 0.079 0.921 18 C -0.203 4.203 19 C -0.569 4.569 20 H 0.082 0.918 21 C -0.136 4.136 22 N -0.521 5.521 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.210 1.210 27 C 0.040 3.960 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.112 0.888 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.893 4.746 7.379 15.595 hybrid contribution -1.394 -0.524 -1.321 1.990 sum -14.287 4.222 6.059 16.083 Atomic orbital electron populations 1.21803 0.92576 1.02992 1.03451 1.23058 0.95236 0.79966 1.02996 1.86501 1.23816 1.32557 1.84626 1.21053 0.80610 0.89788 0.73171 1.90898 1.60169 1.42142 1.44787 1.19146 0.94059 0.90299 1.11504 1.21669 1.00223 0.91747 0.89935 1.21227 0.95278 0.97276 1.03799 1.21200 0.93553 0.98081 0.87944 1.31455 1.28802 0.98950 1.16998 1.02224 0.73549 0.73321 0.73603 1.93517 1.84582 1.40497 1.77676 1.93579 1.75344 1.48561 1.76908 1.57448 1.78950 1.15143 1.30277 1.21266 1.00205 0.83176 0.99594 1.18837 0.92950 0.79432 0.92576 0.92065 1.22050 0.96577 1.02969 0.98735 1.21397 1.16224 1.08617 1.10626 0.91833 1.24891 0.95340 0.95663 0.97700 1.69874 1.31219 1.12517 1.38536 0.86532 0.80671 0.78180 0.82590 1.19808 1.20840 1.20960 1.21073 0.93953 0.96667 0.84328 0.91532 0.91430 0.90185 0.90900 0.91056 0.84037 0.84369 0.83811 0.93387 0.89923 0.93022 0.96692 0.88769 0.94745 0.92609 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.66 6.20 37.16 0.23 0.89 16 3 O -0.36 -4.76 9.47 -40.55 -0.38 -5.15 16 4 C 0.51 8.37 7.90 34.61 0.27 8.64 16 5 O -0.49 -9.63 16.14 -19.24 -0.31 -9.94 16 6 C -0.15 -2.36 5.87 -104.98 -0.62 -2.98 16 7 C -0.02 -0.22 9.62 -39.17 -0.38 -0.59 16 8 C -0.16 -1.81 10.03 -39.64 -0.40 -2.21 16 9 C 0.01 0.16 9.52 -39.49 -0.38 -0.22 16 10 C -0.68 -11.62 5.97 -39.64 -0.24 -11.86 16 11 S 2.68 51.90 5.64 -107.50 -0.61 51.30 16 12 O -0.97 -18.68 16.34 -57.17 -0.93 -19.61 16 13 O -0.95 -21.35 15.84 -57.17 -0.91 -22.26 16 14 N -0.98 -19.81 3.06 -115.85 -0.35 -20.17 16 15 C 0.10 1.76 9.28 59.85 0.56 2.31 16 16 C 0.26 6.38 2.62 -69.08 -0.18 6.20 16 17 H 0.06 1.63 6.91 -51.93 -0.36 1.28 16 18 C -0.14 -3.36 8.97 37.16 0.33 -3.03 16 19 C -0.53 -13.52 7.99 -34.44 -0.28 -13.80 16 20 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.36 11.32 55.43 0.63 -23.73 16 23 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 C 0.06 1.07 9.07 -39.17 -0.36 0.72 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.14 1.35 7.61 -52.48 -0.40 0.95 16 34 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.14 1.68 7.60 -52.49 -0.40 1.28 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 38 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 41 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.16 3.11 7.20 -52.49 -0.38 2.73 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -32.48 375.86 -9.28 -41.76 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.92 Total: 1.46 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.13 Total: -14.97 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.27 Total: -43.90 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -2.53 Total: -56.95 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.61 Total: 51.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.48 -9.28 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264142142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.349 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds