Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45200 * 109.46600 * 2 1 4 4 C 1.34720 * 116.99536 * 179.97438 * 3 2 1 5 5 O 1.21471 * 120.00071 * 0.02562 * 4 3 2 6 6 C 1.47724 * 119.99617 * 179.97438 * 4 3 2 7 7 C 1.39644 * 120.15323 * 359.97438 * 6 4 3 8 8 C 1.37919 * 119.84790 * 180.02562 * 7 6 4 9 9 C 1.38387 * 120.15212 * 359.97438 * 8 7 6 10 10 C 1.38346 * 120.30203 * 359.97438 * 9 8 7 11 11 S 1.76206 * 119.92460 * 179.97438 * 10 9 8 12 12 O 1.42098 * 106.39951 * 23.54132 * 11 10 9 13 13 O 1.42103 * 106.39997 * 156.46154 * 11 10 9 14 14 N 1.65600 * 107.21719 * 270.00243 * 11 10 9 15 15 C 1.46508 * 119.99780 * 90.00134 * 14 11 10 16 16 C 1.46494 * 119.99991 * 269.99865 * 14 11 10 17 17 H 1.08998 * 109.47421 * 359.97438 * 16 14 11 18 18 C 1.53004 * 109.47262 * 240.00017 * 16 14 11 19 19 C 1.50701 * 109.47066 * 120.00600 * 16 14 11 20 20 H 1.08001 * 120.00029 * 359.97438 * 19 16 14 21 21 C 1.37881 * 119.99915 * 180.02562 * 19 16 14 22 22 N 1.31505 * 120.00072 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99802 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47219 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47184 * 119.99749 * 23 21 19 26 26 H 1.48499 * 109.46921 * 239.99659 * 23 21 19 27 27 C 1.37965 * 120.15280 * 0.02562 * 10 9 8 28 28 H 1.08997 * 109.47256 * 300.00149 * 1 2 3 29 29 H 1.08992 * 109.46724 * 60.00421 * 1 2 3 30 30 H 1.09005 * 109.46647 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47256 * 239.99851 * 2 1 3 32 32 H 1.08997 * 109.46708 * 120.00054 * 2 1 3 33 33 H 1.08003 * 120.07449 * 359.97438 * 7 6 4 34 34 H 1.08005 * 119.92645 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.85038 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.46819 * 89.99849 * 15 14 11 37 37 H 1.08994 * 109.46687 * 209.99380 * 15 14 11 38 38 H 1.08996 * 109.47102 * 329.99667 * 15 14 11 39 39 H 1.09004 * 109.46868 * 60.00129 * 18 16 14 40 40 H 1.08992 * 109.47529 * 179.97438 * 18 16 14 41 41 H 1.09000 * 109.47333 * 300.00444 * 18 16 14 42 42 H 0.97007 * 120.00177 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.07710 * 180.27513 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0895 0.5822 0.0005 6 6 3.9141 2.9107 0.0000 7 6 3.0663 4.0203 -0.0016 8 6 3.6001 5.2920 -0.0026 9 6 4.9725 5.4697 -0.0015 10 6 5.8182 4.3749 0.0011 11 16 7.5641 4.6127 0.0018 12 8 7.7926 5.9062 0.5439 13 8 8.1300 3.4296 0.5489 14 7 8.0508 4.6759 -1.5798 15 6 8.0949 5.9610 -2.2819 16 6 8.4374 3.4468 -2.2769 17 1 8.3415 2.5989 -1.5987 18 6 9.8890 3.5618 -2.7466 19 6 7.5386 3.2415 -3.4689 20 1 6.7572 3.9550 -3.6854 21 6 7.7130 2.1421 -4.2827 22 7 8.6641 1.2731 -4.0189 23 14 6.5984 1.8873 -5.7599 24 1 5.6158 2.9981 -5.8361 25 1 7.4165 1.8636 -6.9990 26 1 5.8766 0.5973 -5.6186 27 6 5.2977 3.0972 0.0022 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9950 3.8830 -0.0029 34 1 2.9456 6.1511 -0.0035 35 1 5.3853 6.4677 -0.0019 36 1 9.0783 6.4128 -2.1513 37 1 7.9063 5.8017 -3.3435 38 1 7.3330 6.6247 -1.8730 39 1 10.5392 3.7103 -1.8844 40 1 10.1768 2.6472 -3.2648 41 1 9.9854 4.4097 -3.4247 42 1 8.7871 0.4998 -4.5916 43 1 5.9590 2.2433 0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264142142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -151.057211 kcal Electronic energy + Delta-G solvation = -28434.205487 eV Core-core repulsion = 24378.060916 eV Total energy + Delta-G solvation = -4056.144571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78357 -39.94237 -38.40357 -37.92199 -37.77435 -36.95436 -34.54132 -33.30344 -32.36620 -32.12980 -30.94666 -27.27405 -27.01759 -26.10138 -24.49298 -23.70470 -22.60630 -22.28028 -20.34338 -19.28091 -18.54437 -18.42791 -18.33245 -17.71634 -17.24471 -17.11362 -17.09379 -16.57250 -15.89049 -15.32694 -15.26201 -15.07807 -14.90427 -14.66862 -14.46201 -14.04597 -13.73372 -13.65976 -13.45484 -13.42115 -13.27248 -13.19902 -13.01024 -13.00242 -12.89305 -12.75575 -12.69840 -12.55926 -12.21309 -12.15858 -12.03842 -11.88167 -11.73048 -11.62425 -11.17190 -10.62173 -10.53097 -10.27502 -9.67167 -8.12276 -6.26619 -0.68459 -0.53653 -0.17345 1.24372 1.39035 1.41441 1.41991 1.51103 2.00581 2.39913 2.45748 2.76098 3.16822 3.23793 3.45811 3.67827 3.86336 3.95446 3.98481 4.03099 4.10660 4.21498 4.28731 4.37687 4.65294 4.70968 4.75082 4.83094 4.90229 4.90524 4.97620 5.00141 5.02298 5.05377 5.08460 5.14969 5.28337 5.31578 5.59671 5.60907 5.67648 5.83511 6.07819 6.26050 6.51104 6.82743 7.42938 8.92696 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.005079 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.242070 B = 5511.807107 C = 7453.724048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.345 6.345 4 C 0.510 3.490 5 O -0.539 6.539 6 C -0.165 4.165 7 C 0.000 4.000 8 C -0.135 4.135 9 C 0.011 3.989 10 C -0.688 4.688 11 S 2.693 3.307 12 O -0.971 6.971 13 O -0.998 6.998 14 N -0.986 5.986 15 C 0.093 3.907 16 C 0.270 3.730 17 H 0.022 0.978 18 C -0.137 4.137 19 C -0.529 4.529 20 H 0.071 0.929 21 C 0.016 3.984 22 N -0.917 5.917 23 Si 0.951 3.049 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.292 1.292 27 C 0.028 3.972 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.180 0.820 34 H 0.194 0.806 35 H 0.172 0.828 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.263 0.737 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.360 8.174 6.310 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.261 6.261 4 C 0.356 3.644 5 O -0.431 6.431 6 C -0.167 4.167 7 C -0.018 4.018 8 C -0.153 4.153 9 C -0.008 4.008 10 C -0.776 4.776 11 S 2.786 3.214 12 O -0.961 6.961 13 O -0.989 6.989 14 N -0.825 5.825 15 C -0.051 4.051 16 C 0.166 3.834 17 H 0.040 0.960 18 C -0.197 4.197 19 C -0.569 4.569 20 H 0.089 0.911 21 C -0.183 4.183 22 N -0.556 5.556 23 Si 0.777 3.223 24 H -0.184 1.184 25 H -0.202 1.202 26 H -0.218 1.218 27 C 0.008 3.992 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.197 0.803 34 H 0.211 0.789 35 H 0.189 0.811 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.040 0.960 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.565 7.789 6.970 19.587 hybrid contribution -0.368 -1.419 -1.104 1.834 sum -16.933 6.371 5.866 19.019 Atomic orbital electron populations 1.21820 0.89250 1.04609 1.04148 1.23413 0.97711 0.78725 1.02535 1.86495 1.21759 1.34079 1.83801 1.21315 0.81345 0.89690 0.72036 1.90875 1.61403 1.43622 1.47157 1.19246 0.93487 0.91361 1.12650 1.22149 1.01561 0.90825 0.87261 1.21828 0.94666 0.98463 1.00375 1.21671 0.94557 0.97923 0.86668 1.30926 1.27184 0.99775 1.19738 1.01604 0.74348 0.72461 0.72978 1.93504 1.85270 1.39900 1.77442 1.93522 1.77235 1.50373 1.77758 1.57305 1.79816 1.15053 1.30363 1.21543 1.02167 0.82092 0.99336 1.18451 0.93244 0.80081 0.91612 0.96004 1.21928 0.96473 1.02284 0.99030 1.21667 1.16168 1.08463 1.10563 0.91116 1.25666 0.96636 0.95650 1.00390 1.70016 1.32873 1.13052 1.39651 0.85607 0.79171 0.77864 0.79656 1.18369 1.20182 1.21830 1.20850 0.95002 0.96139 0.87182 0.90495 0.90970 0.88125 0.91970 0.91180 0.80258 0.78930 0.81084 0.92273 0.90320 0.89663 0.95960 0.91240 0.93239 0.92790 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 10.29 71.98 0.74 -0.99 16 2 C 0.05 1.04 6.20 71.98 0.45 1.48 16 3 O -0.34 -8.78 9.47 -56.30 -0.53 -9.31 16 4 C 0.51 17.06 7.90 70.33 0.56 17.62 16 5 O -0.54 -22.56 16.14 19.93 0.32 -22.24 16 6 C -0.17 -5.20 5.87 -20.10 -0.12 -5.32 16 7 C 0.00 0.00 9.62 22.53 0.22 0.22 16 8 C -0.14 -2.37 10.03 22.23 0.22 -2.15 16 9 C 0.01 0.26 9.52 22.33 0.21 0.47 16 10 C -0.69 -23.38 5.97 22.23 0.13 -23.25 16 11 S 2.69 106.18 5.64 -56.49 -0.32 105.86 16 12 O -0.97 -36.25 16.34 -128.00 -2.09 -38.34 16 13 O -1.00 -47.95 15.84 -128.00 -2.03 -49.98 16 14 N -0.99 -40.28 3.06 -520.44 -1.59 -41.88 16 15 C 0.09 3.01 9.28 127.77 1.19 4.19 16 16 C 0.27 13.54 2.62 44.25 0.12 13.66 16 17 H 0.02 1.27 6.91 -2.39 -0.02 1.26 16 18 C -0.14 -6.65 8.97 71.98 0.65 -6.00 16 19 C -0.53 -27.52 7.99 25.60 0.20 -27.31 16 20 H 0.07 3.49 7.33 -2.91 -0.02 3.47 16 21 C 0.02 0.88 5.30 84.66 0.45 1.33 16 22 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 23 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 27 C 0.03 1.07 9.07 22.54 0.20 1.27 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.18 2.39 7.61 -2.91 -0.02 2.37 16 34 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.17 3.15 7.60 -2.91 -0.02 3.12 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.08 2.59 7.02 -2.39 -0.02 2.58 16 38 H 0.08 2.13 7.79 -2.39 -0.02 2.12 16 39 H 0.02 0.98 8.14 -2.38 -0.02 0.97 16 40 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 41 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 42 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 43 H 0.12 5.26 7.20 -2.91 -0.02 5.24 16 Total: -1.00 -75.84 375.86 2.26 -73.58 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.02 Total: 14.73 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 5.22 Total: -24.76 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -1.35 Total: -94.25 kcal Atomic # 8 Polarization: -115.54 SS G_CDS: -4.33 Total: -119.87 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 106.18 SS G_CDS: -0.32 Total: 105.86 kcal Total: -75.84 2.26 -73.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264142142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.480 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds