Wall clock time and date at job start Sat Apr 11 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45202 * 109.47147 * 2 1 4 4 C 1.34714 * 117.00050 * 179.97438 * 3 2 1 5 5 O 1.21466 * 119.99875 * 0.02562 * 4 3 2 6 6 C 1.47725 * 119.99819 * 179.97438 * 4 3 2 7 7 C 1.39644 * 120.15192 * 359.97438 * 6 4 3 8 8 C 1.37924 * 119.84764 * 180.02562 * 7 6 4 9 9 C 1.38391 * 120.15315 * 359.73054 * 8 7 6 10 10 C 1.38346 * 120.29650 * 0.55199 * 9 8 7 11 11 S 1.76195 * 119.92274 * 179.72310 * 10 9 8 12 12 O 1.42098 * 106.40743 * 156.18528 * 11 10 9 13 13 O 1.42102 * 106.40251 * 23.26405 * 11 10 9 14 14 N 1.65608 * 107.21866 * 269.72585 * 11 10 9 15 15 C 1.46497 * 119.99806 * 270.00052 * 14 11 10 16 16 C 1.46493 * 119.99913 * 89.99762 * 14 11 10 17 17 H 1.09000 * 109.47307 * 0.02562 * 16 14 11 18 18 C 1.53005 * 109.46811 * 120.00166 * 16 14 11 19 19 C 1.50700 * 109.47019 * 239.99839 * 16 14 11 20 20 H 1.07997 * 120.00524 * 325.03784 * 19 16 14 21 21 C 1.37878 * 119.99599 * 145.03842 * 19 16 14 22 22 N 1.31521 * 119.99865 * 176.72562 * 21 19 16 23 23 Si 1.86803 * 120.00275 * 356.71721 * 21 19 16 24 24 H 1.48496 * 109.47497 * 274.93414 * 23 21 19 25 25 H 1.48502 * 109.46929 * 34.93305 * 23 21 19 26 26 H 1.48504 * 109.47111 * 154.93179 * 23 21 19 27 27 C 1.37967 * 120.15240 * 359.44559 * 10 9 8 28 28 H 1.09000 * 109.47311 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47547 * 300.00566 * 1 2 3 31 31 H 1.09000 * 109.47557 * 239.99991 * 2 1 3 32 32 H 1.09001 * 109.46886 * 119.99633 * 2 1 3 33 33 H 1.08005 * 120.07831 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.92335 * 180.02562 * 8 7 6 35 35 H 1.07993 * 119.85289 * 180.26982 * 9 8 7 36 36 H 1.09004 * 109.47043 * 269.99675 * 15 14 11 37 37 H 1.09002 * 109.47199 * 29.99257 * 15 14 11 38 38 H 1.08997 * 109.47172 * 149.99931 * 15 14 11 39 39 H 1.09009 * 109.46703 * 185.57607 * 18 16 14 40 40 H 1.08992 * 109.47188 * 305.57697 * 18 16 14 41 41 H 1.08997 * 109.47438 * 65.58191 * 18 16 14 42 42 H 0.96998 * 120.00005 * 180.02562 * 22 21 19 43 43 H 1.08003 * 120.07645 * 180.25283 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9140 2.9106 0.0000 7 6 3.0663 4.0202 -0.0016 8 6 3.6002 5.2920 -0.0026 9 6 4.9726 5.4697 0.0035 10 6 5.8182 4.3748 -0.0007 11 16 7.5641 4.6125 -0.0001 12 8 8.1301 3.4290 0.5457 13 8 7.7928 5.9056 0.5431 14 7 8.0505 4.6771 -1.5818 15 6 8.4369 3.4486 -2.2801 16 6 8.0944 5.9628 -2.2827 17 1 7.7750 6.7561 -1.6070 18 6 9.5241 6.2387 -2.7528 19 6 7.1738 5.9166 -3.4749 20 1 7.0569 4.9987 -4.0318 21 6 6.4806 7.0464 -3.8547 22 7 5.7273 7.0243 -4.9326 23 14 6.6114 8.6082 -2.8384 24 1 5.6318 8.5569 -1.7235 25 1 7.9847 8.7256 -2.2856 26 1 6.3217 9.7840 -3.6981 27 6 5.2976 3.0971 0.0004 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.9950 3.8830 -0.0020 34 1 2.9457 6.1511 -0.0035 35 1 5.3854 6.4677 0.0071 36 1 9.5052 3.2767 -2.1487 37 1 7.8802 2.6065 -1.8688 38 1 8.2128 3.5484 -3.3421 39 1 9.5776 7.2376 -3.1861 40 1 10.2045 6.1740 -1.9038 41 1 9.8085 5.5014 -3.5034 42 1 5.2399 7.8192 -5.2000 43 1 5.9589 2.2432 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264142148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:06 Heat of formation + Delta-G solvation = -129.896170 kcal Electronic energy + Delta-G solvation = -28396.898475 eV Core-core repulsion = 24341.671516 eV Total energy + Delta-G solvation = -4055.226959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.66223 -38.81270 -36.89494 -36.65914 -36.37867 -35.42314 -32.56782 -32.33948 -31.25753 -31.17342 -29.99684 -25.75850 -25.24072 -25.02633 -23.37596 -22.80319 -21.22493 -20.66601 -19.04382 -17.89668 -17.43134 -17.31606 -16.71702 -16.58452 -16.06921 -15.87515 -15.71248 -14.97597 -14.39378 -14.33225 -14.12188 -13.71723 -13.62769 -13.20773 -13.04878 -12.96091 -12.65669 -12.59816 -12.27268 -12.15322 -12.04970 -11.93844 -11.82754 -11.73486 -11.59536 -11.47874 -11.25050 -10.86042 -10.81176 -10.74661 -10.73523 -10.58139 -10.35043 -9.89860 -9.52524 -9.35136 -9.11992 -8.73952 -8.12415 -6.28119 -4.28956 0.52845 0.82252 1.04734 2.39247 2.44675 3.13194 3.24651 3.31106 3.37638 3.65530 4.17425 4.23324 4.41933 4.60321 4.66808 4.71472 4.84994 4.91595 5.00421 5.05075 5.10917 5.27340 5.42807 5.49259 5.54495 5.56250 5.68307 5.75649 5.98287 6.03689 6.09488 6.12611 6.17904 6.26137 6.33514 6.41949 6.53573 6.62938 6.68511 6.90284 7.13741 7.35580 7.57086 7.61499 8.32541 8.77773 9.32354 10.83616 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004058 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.960320 B = 6898.594246 C = 7737.113099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.515 3.485 5 O -0.504 6.504 6 C -0.154 4.154 7 C -0.015 4.015 8 C -0.149 4.149 9 C 0.028 3.972 10 C -0.676 4.676 11 S 2.677 3.323 12 O -0.968 6.968 13 O -0.961 6.961 14 N -0.973 5.973 15 C 0.101 3.899 16 C 0.231 3.769 17 H 0.057 0.943 18 C -0.143 4.143 19 C -0.520 4.520 20 H 0.084 0.916 21 C 0.080 3.920 22 N -0.885 5.885 23 Si 0.854 3.146 24 H -0.269 1.269 25 H -0.256 1.256 26 H -0.283 1.283 27 C 0.044 3.956 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.030 0.970 41 H 0.054 0.946 42 H 0.267 0.733 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -7.869 8.945 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.272 6.272 4 C 0.360 3.640 5 O -0.393 6.393 6 C -0.155 4.155 7 C -0.033 4.033 8 C -0.168 4.168 9 C 0.009 3.991 10 C -0.760 4.760 11 S 2.767 3.233 12 O -0.959 6.959 13 O -0.951 6.951 14 N -0.813 5.813 15 C -0.045 4.045 16 C 0.128 3.872 17 H 0.075 0.925 18 C -0.203 4.203 19 C -0.560 4.560 20 H 0.102 0.898 21 C -0.125 4.125 22 N -0.522 5.522 23 Si 0.680 3.320 24 H -0.195 1.195 25 H -0.180 1.180 26 H -0.208 1.208 27 C 0.025 3.975 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.175 -8.032 9.570 14.408 hybrid contribution -0.913 0.663 -0.062 1.130 sum -8.088 -7.369 9.509 14.496 Atomic orbital electron populations 1.21810 0.92499 1.03016 1.03625 1.23057 0.95361 0.79904 1.02835 1.86528 1.23744 1.32569 1.84372 1.21057 0.80591 0.89687 0.72664 1.90843 1.60317 1.42296 1.45810 1.19086 0.94023 0.90193 1.12245 1.21669 1.00249 0.91678 0.89699 1.21285 0.95357 0.97435 1.02710 1.21256 0.93622 0.98401 0.85855 1.31337 1.28566 0.98906 1.17187 1.02486 0.73622 0.73368 0.73790 1.93536 1.75750 1.49063 1.77511 1.93543 1.84382 1.39996 1.77228 1.57672 1.79062 1.14750 1.29844 1.21309 0.99028 0.84328 0.99792 1.19174 0.94882 0.79962 0.93221 0.92486 1.22158 0.97040 1.01415 0.99666 1.21226 1.24445 0.99128 1.11218 0.89791 1.24973 0.94312 0.98359 0.94849 1.69881 1.29025 1.29702 1.23590 0.87203 0.80217 0.83710 0.80826 1.19472 1.18028 1.20838 1.20931 0.93894 0.96159 0.86543 0.91321 0.90162 0.91462 0.90973 0.91101 0.83945 0.84181 0.83721 0.93293 0.92583 0.89781 0.92546 0.95130 0.92685 0.92277 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.15 0.38 -0.63 16 2 C 0.06 0.60 6.19 37.15 0.23 0.83 16 3 O -0.35 -4.41 9.47 -40.53 -0.38 -4.80 16 4 C 0.51 7.71 7.90 34.61 0.27 7.98 16 5 O -0.50 -8.59 16.14 -19.24 -0.31 -8.90 16 6 C -0.15 -2.35 5.87 -104.99 -0.62 -2.97 16 7 C -0.01 -0.19 9.62 -39.17 -0.38 -0.57 16 8 C -0.15 -2.09 10.03 -39.64 -0.40 -2.49 16 9 C 0.03 0.47 9.52 -39.49 -0.38 0.09 16 10 C -0.68 -11.98 5.97 -39.64 -0.24 -12.22 16 11 S 2.68 51.55 5.64 -107.50 -0.61 50.95 16 12 O -0.97 -19.22 16.35 -57.17 -0.93 -20.15 16 13 O -0.96 -20.19 15.83 -57.17 -0.90 -21.09 16 14 N -0.97 -19.25 3.06 -115.86 -0.35 -19.60 16 15 C 0.10 1.74 9.45 59.85 0.57 2.30 16 16 C 0.23 5.10 2.25 -69.08 -0.16 4.94 16 17 H 0.06 1.31 4.13 -51.93 -0.21 1.09 16 18 C -0.14 -2.86 9.09 37.16 0.34 -2.52 16 19 C -0.52 -13.06 8.73 -34.44 -0.30 -13.36 16 20 H 0.08 2.26 6.82 -52.49 -0.36 1.91 16 21 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.89 -24.77 13.96 55.43 0.77 -24.00 16 23 Si 0.85 19.67 26.89 -169.99 -4.57 15.10 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.26 -5.71 6.72 56.52 0.38 -5.33 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.04 0.74 9.07 -39.17 -0.36 0.39 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 1.48 7.61 -52.48 -0.40 1.08 16 34 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.15 2.41 7.60 -52.49 -0.40 2.01 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 38 H 0.08 1.48 6.56 -51.93 -0.34 1.14 16 39 H 0.06 1.13 7.92 -51.92 -0.41 0.72 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 1.04 7.86 -51.93 -0.41 0.63 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 43 H 0.15 2.48 7.20 -52.48 -0.38 2.10 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -31.48 374.56 -8.62 -40.11 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.85 Total: 3.00 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.12 Total: -16.25 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.42 Total: -43.60 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -2.53 Total: -54.94 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.57 Total: 15.10 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.61 Total: 50.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.48 -8.62 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264142148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.791 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds