Wall clock time and date at job start Sat Apr 11 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45202 * 109.47147 * 2 1 4 4 C 1.34714 * 117.00050 * 179.97438 * 3 2 1 5 5 O 1.21466 * 119.99875 * 0.02562 * 4 3 2 6 6 C 1.47725 * 119.99819 * 179.97438 * 4 3 2 7 7 C 1.39644 * 120.15192 * 359.97438 * 6 4 3 8 8 C 1.37924 * 119.84764 * 180.02562 * 7 6 4 9 9 C 1.38391 * 120.15315 * 359.73054 * 8 7 6 10 10 C 1.38346 * 120.29650 * 0.55199 * 9 8 7 11 11 S 1.76195 * 119.92274 * 179.72310 * 10 9 8 12 12 O 1.42098 * 106.40743 * 156.18528 * 11 10 9 13 13 O 1.42102 * 106.40251 * 23.26405 * 11 10 9 14 14 N 1.65608 * 107.21866 * 269.72585 * 11 10 9 15 15 C 1.46497 * 119.99806 * 270.00052 * 14 11 10 16 16 C 1.46493 * 119.99913 * 89.99762 * 14 11 10 17 17 H 1.09000 * 109.47307 * 0.02562 * 16 14 11 18 18 C 1.53005 * 109.46811 * 120.00166 * 16 14 11 19 19 C 1.50700 * 109.47019 * 239.99839 * 16 14 11 20 20 H 1.07997 * 120.00524 * 325.03784 * 19 16 14 21 21 C 1.37878 * 119.99599 * 145.03842 * 19 16 14 22 22 N 1.31521 * 119.99865 * 176.72562 * 21 19 16 23 23 Si 1.86803 * 120.00275 * 356.71721 * 21 19 16 24 24 H 1.48496 * 109.47497 * 274.93414 * 23 21 19 25 25 H 1.48502 * 109.46929 * 34.93305 * 23 21 19 26 26 H 1.48504 * 109.47111 * 154.93179 * 23 21 19 27 27 C 1.37967 * 120.15240 * 359.44559 * 10 9 8 28 28 H 1.09000 * 109.47311 * 60.00042 * 1 2 3 29 29 H 1.08998 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47547 * 300.00566 * 1 2 3 31 31 H 1.09000 * 109.47557 * 239.99991 * 2 1 3 32 32 H 1.09001 * 109.46886 * 119.99633 * 2 1 3 33 33 H 1.08005 * 120.07831 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.92335 * 180.02562 * 8 7 6 35 35 H 1.07993 * 119.85289 * 180.26982 * 9 8 7 36 36 H 1.09004 * 109.47043 * 269.99675 * 15 14 11 37 37 H 1.09002 * 109.47199 * 29.99257 * 15 14 11 38 38 H 1.08997 * 109.47172 * 149.99931 * 15 14 11 39 39 H 1.09009 * 109.46703 * 185.57607 * 18 16 14 40 40 H 1.08992 * 109.47188 * 305.57697 * 18 16 14 41 41 H 1.08997 * 109.47438 * 65.58191 * 18 16 14 42 42 H 0.96998 * 120.00005 * 180.02562 * 22 21 19 43 43 H 1.08003 * 120.07645 * 180.25283 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9140 2.9106 0.0000 7 6 3.0663 4.0202 -0.0016 8 6 3.6002 5.2920 -0.0026 9 6 4.9726 5.4697 0.0035 10 6 5.8182 4.3748 -0.0007 11 16 7.5641 4.6125 -0.0001 12 8 8.1301 3.4290 0.5457 13 8 7.7928 5.9056 0.5431 14 7 8.0505 4.6771 -1.5818 15 6 8.4369 3.4486 -2.2801 16 6 8.0944 5.9628 -2.2827 17 1 7.7750 6.7561 -1.6070 18 6 9.5241 6.2387 -2.7528 19 6 7.1738 5.9166 -3.4749 20 1 7.0569 4.9987 -4.0318 21 6 6.4806 7.0464 -3.8547 22 7 5.7273 7.0243 -4.9326 23 14 6.6114 8.6082 -2.8384 24 1 5.6318 8.5569 -1.7235 25 1 7.9847 8.7256 -2.2856 26 1 6.3217 9.7840 -3.6981 27 6 5.2976 3.0971 0.0004 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.9950 3.8830 -0.0020 34 1 2.9457 6.1511 -0.0035 35 1 5.3854 6.4677 0.0071 36 1 9.5052 3.2767 -2.1487 37 1 7.8802 2.6065 -1.8688 38 1 8.2128 3.5484 -3.3421 39 1 9.5776 7.2376 -3.1861 40 1 10.2045 6.1740 -1.9038 41 1 9.8085 5.5014 -3.5034 42 1 5.2399 7.8192 -5.2000 43 1 5.9589 2.2432 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264142148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:06 Heat of formation + Delta-G solvation = -149.712428 kcal Electronic energy + Delta-G solvation = -28397.757773 eV Core-core repulsion = 24341.671516 eV Total energy + Delta-G solvation = -4056.086257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78480 -39.97592 -38.47395 -38.02302 -37.75693 -37.00709 -34.48437 -33.30893 -32.43961 -32.13399 -31.68237 -27.33593 -27.03514 -26.11030 -24.53370 -23.69730 -22.51320 -22.22356 -20.34780 -19.41305 -19.13653 -18.45574 -18.31970 -17.69147 -17.32969 -17.16538 -17.15523 -16.47868 -15.90338 -15.39583 -15.28883 -15.20488 -14.70597 -14.65946 -14.47506 -14.44591 -14.05176 -13.63562 -13.57723 -13.49646 -13.39852 -13.30738 -13.09649 -13.01754 -12.98557 -12.89937 -12.55514 -12.53714 -12.45209 -12.18405 -11.96460 -11.76170 -11.73872 -11.59296 -11.24917 -10.73435 -10.63633 -10.33101 -9.73033 -8.28169 -6.32473 -0.74372 -0.57642 -0.22643 1.21622 1.33499 1.40431 1.42540 1.48884 1.92234 2.33670 2.37445 2.68913 3.08241 3.17923 3.41841 3.61208 3.80654 3.91414 3.99152 4.00848 4.04437 4.14880 4.28364 4.34617 4.44621 4.59872 4.70191 4.70765 4.79373 4.85557 4.87685 4.91927 4.92137 4.94720 5.03555 5.08376 5.11595 5.30312 5.33419 5.47827 5.52349 5.54888 5.88729 6.35658 6.50353 6.74420 7.32702 8.86938 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004058 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.960320 B = 6898.594246 C = 7737.113099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.349 6.349 4 C 0.518 3.482 5 O -0.532 6.532 6 C -0.162 4.162 7 C 0.001 3.999 8 C -0.144 4.144 9 C 0.005 3.995 10 C -0.688 4.688 11 S 2.689 3.311 12 O -0.978 6.978 13 O -0.980 6.980 14 N -0.980 5.980 15 C 0.095 3.905 16 C 0.232 3.768 17 H 0.052 0.948 18 C -0.144 4.144 19 C -0.514 4.514 20 H 0.055 0.945 21 C 0.035 3.965 22 N -0.932 5.932 23 Si 0.894 3.106 24 H -0.252 1.252 25 H -0.246 1.246 26 H -0.282 1.282 27 C 0.030 3.970 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.142 0.858 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.268 0.732 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.209 -7.820 10.228 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.364 3.636 5 O -0.423 6.423 6 C -0.164 4.164 7 C -0.017 4.017 8 C -0.162 4.162 9 C -0.014 4.014 10 C -0.775 4.775 11 S 2.782 3.218 12 O -0.968 6.968 13 O -0.971 6.971 14 N -0.820 5.820 15 C -0.050 4.050 16 C 0.128 3.872 17 H 0.070 0.930 18 C -0.204 4.204 19 C -0.554 4.554 20 H 0.073 0.927 21 C -0.165 4.165 22 N -0.571 5.571 23 Si 0.717 3.283 24 H -0.177 1.177 25 H -0.169 1.169 26 H -0.208 1.208 27 C 0.010 3.990 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.197 0.803 34 H 0.193 0.807 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.611 -7.986 10.856 15.993 hybrid contribution -0.549 0.480 -0.431 0.847 sum -9.159 -7.506 10.426 15.777 Atomic orbital electron populations 1.21834 0.89875 1.04588 1.03919 1.23418 0.97341 0.78483 1.02906 1.86521 1.22005 1.34398 1.83648 1.21018 0.81321 0.89171 0.72047 1.90828 1.61162 1.43064 1.47231 1.19261 0.93732 0.91306 1.12129 1.22085 1.01792 0.90617 0.87223 1.21701 0.94535 0.98988 1.00967 1.21463 0.95089 0.97944 0.86942 1.30976 1.27371 0.99785 1.19366 1.01839 0.74095 0.72718 0.73168 1.93518 1.76634 1.49172 1.77484 1.93510 1.85159 1.40886 1.77539 1.57481 1.79687 1.14753 1.30070 1.21481 1.00609 0.83805 0.99115 1.19044 0.95352 0.80812 0.91994 0.93010 1.22131 0.96086 1.01558 1.00612 1.21334 1.24516 0.97855 1.11705 0.92696 1.25576 0.94212 1.01120 0.95612 1.69997 1.30949 1.30623 1.25552 0.86538 0.81211 0.80443 0.80096 1.17669 1.16918 1.20796 1.20959 0.94948 0.95674 0.87387 0.91261 0.87961 0.90871 0.91274 0.90823 0.80324 0.80703 0.84025 0.91186 0.91264 0.90731 0.92696 0.93194 0.92015 0.92313 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 71.98 0.74 -0.80 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.35 -7.97 9.47 -56.24 -0.53 -8.50 16 4 C 0.52 14.93 7.90 70.33 0.56 15.49 16 5 O -0.53 -17.99 16.14 19.95 0.32 -17.67 16 6 C -0.16 -4.76 5.87 -20.10 -0.12 -4.88 16 7 C 0.00 0.02 9.62 22.53 0.22 0.23 16 8 C -0.14 -3.63 10.03 22.23 0.22 -3.41 16 9 C 0.00 0.16 9.52 22.33 0.21 0.37 16 10 C -0.69 -24.15 5.97 22.23 0.13 -24.02 16 11 S 2.69 102.79 5.64 -56.49 -0.32 102.47 16 12 O -0.98 -38.54 16.35 -128.00 -2.09 -40.63 16 13 O -0.98 -40.71 15.83 -128.00 -2.03 -42.73 16 14 N -0.98 -38.46 3.06 -520.46 -1.59 -40.05 16 15 C 0.09 3.23 9.45 127.77 1.21 4.44 16 16 C 0.23 10.15 2.25 44.25 0.10 10.25 16 17 H 0.05 2.33 4.13 -2.39 -0.01 2.32 16 18 C -0.14 -5.61 9.09 71.98 0.65 -4.95 16 19 C -0.51 -26.14 8.73 25.60 0.22 -25.92 16 20 H 0.05 3.06 6.82 -2.91 -0.02 3.04 16 21 C 0.03 1.84 5.47 84.65 0.46 2.30 16 22 N -0.93 -53.09 13.96 21.45 0.30 -52.79 16 23 Si 0.89 39.68 26.89 68.60 1.84 41.52 16 24 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.25 -10.40 6.72 99.48 0.67 -9.73 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.03 1.00 9.07 22.54 0.20 1.20 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.18 2.92 7.61 -2.91 -0.02 2.90 16 34 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.14 4.59 7.60 -2.91 -0.02 4.57 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 38 H 0.07 2.67 6.56 -2.39 -0.02 2.65 16 39 H 0.05 2.13 7.92 -2.38 -0.02 2.11 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 2.28 7.86 -2.39 -0.02 2.26 16 42 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.15 4.89 7.20 -2.91 -0.02 4.87 16 Total: -1.00 -68.20 374.56 2.15 -66.05 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.99 Total: 20.68 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 5.26 Total: -28.34 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -1.29 Total: -92.84 kcal Atomic # 8 Polarization: -105.21 SS G_CDS: -4.33 Total: -109.54 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.84 Total: 41.52 kcal Atomic # 16 Polarization: 102.79 SS G_CDS: -0.32 Total: 102.47 kcal Total: -68.20 2.15 -66.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264142148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.661 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds