Wall clock time and date at job start Sat Apr 11 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.46940 * 2 1 4 4 C 1.35970 * 116.99991 * 179.97438 * 3 2 1 5 5 C 1.38720 * 119.98740 * 179.97438 * 4 3 2 6 6 C 1.38088 * 120.01867 * 180.02562 * 5 4 3 7 7 C 1.38849 * 119.98133 * 359.97438 * 6 5 4 8 8 N 1.40109 * 120.01360 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99980 * 247.89874 * 8 7 6 10 10 C 1.50700 * 109.46931 * 89.99665 * 9 8 7 11 11 H 1.07989 * 120.00154 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99521 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00166 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99702 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47293 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47132 * 120.00413 * 14 12 10 17 17 H 1.48506 * 109.46873 * 240.00076 * 14 12 10 18 18 C 1.34769 * 120.00216 * 67.89599 * 8 7 6 19 19 O 1.21299 * 120.00104 * 4.73913 * 18 8 7 20 20 C 1.50709 * 120.00150 * 184.74084 * 18 8 7 21 21 S 1.81398 * 109.47034 * 180.02562 * 20 18 8 22 22 C 1.81398 * 101.91864 * 180.02562 * 21 20 18 23 23 O 1.42104 * 108.57735 * 294.48180 * 21 20 18 24 24 O 1.42096 * 108.58315 * 65.50720 * 21 20 18 25 25 C 1.38851 * 119.96994 * 0.26754 * 7 6 5 26 26 C 1.38084 * 119.98564 * 359.47539 * 25 7 6 27 27 H 1.08999 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47356 * 299.99842 * 1 2 3 29 29 H 1.08998 * 109.47143 * 59.99735 * 1 2 3 30 30 H 1.09002 * 109.46887 * 240.00359 * 2 1 3 31 31 H 1.08998 * 109.47143 * 120.00265 * 2 1 3 32 32 H 1.08004 * 119.99127 * 0.03708 * 5 4 3 33 33 H 1.07993 * 120.01090 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.46953 * 210.00159 * 9 8 7 35 35 H 1.09000 * 109.46531 * 329.99706 * 9 8 7 36 36 H 0.96996 * 120.00182 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.46482 * 299.99797 * 20 18 8 38 38 H 1.08994 * 109.47029 * 59.99956 * 20 18 8 39 39 H 1.08996 * 109.47563 * 59.99834 * 22 21 20 40 40 H 1.09007 * 109.46810 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47298 * 299.99564 * 22 21 20 42 42 H 1.08005 * 120.00343 * 179.72406 * 25 7 6 43 43 H 1.08001 * 119.99137 * 180.22996 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 3.8842 2.8075 0.0000 6 6 5.2530 2.9892 0.0001 7 6 6.0991 1.8883 0.0011 8 7 7.4881 2.0719 0.0006 9 6 8.2766 1.6932 -1.1747 10 6 8.3743 2.8679 -2.1137 11 1 7.8972 3.8029 -1.8603 12 6 9.0737 2.7490 -3.2960 13 7 9.6551 1.6104 -3.6044 14 14 9.1954 4.2052 -4.4597 15 1 8.4607 5.3608 -3.8851 16 1 10.6223 4.5705 -4.6480 17 1 8.6002 3.8421 -5.7709 18 6 8.0989 2.5968 1.0812 19 8 7.4599 2.8304 2.0854 20 6 9.5760 2.8936 1.0420 21 16 10.0959 3.5867 2.6356 22 6 11.8683 3.8616 2.3642 23 8 9.4641 4.8477 2.8087 24 8 9.9397 2.5894 3.6357 25 6 5.5681 0.6053 -0.0035 26 6 4.1991 0.4251 0.0019 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.2259 3.6637 -0.0002 33 1 5.6654 3.9873 -0.0008 34 1 9.2768 1.3950 -0.8605 35 1 7.7923 0.8601 -1.6841 36 1 10.1468 1.5266 -4.4363 37 1 10.1265 1.9728 0.8496 38 1 9.7812 3.6122 0.2485 39 1 12.0057 4.5522 1.5323 40 1 12.3123 4.2855 3.2650 41 1 12.3518 2.9127 2.1324 42 1 6.2257 -0.2514 -0.0071 43 1 3.7859 -0.5728 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264548152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:10 Heat of formation + Delta-G solvation = -109.197712 kcal Electronic energy + Delta-G solvation = -27764.694399 eV Core-core repulsion = 23710.364992 eV Total energy + Delta-G solvation = -4054.329407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.25376 -39.32561 -37.19146 -36.70469 -35.72481 -35.02751 -32.78097 -31.85383 -30.71393 -30.53903 -29.39714 -28.24860 -26.97359 -24.07433 -23.25397 -22.30681 -21.58957 -19.44511 -18.48072 -18.11273 -17.19601 -16.92907 -16.42818 -16.06373 -15.92933 -15.89185 -15.62820 -15.38869 -14.63542 -14.45327 -14.19326 -13.68181 -13.35132 -13.23520 -13.23067 -13.16682 -13.08682 -12.79351 -12.55595 -12.26498 -12.11499 -11.86436 -11.77659 -11.71251 -11.69459 -11.63526 -11.17119 -10.99794 -10.89244 -10.73120 -10.61452 -10.50548 -10.31365 -9.94265 -9.67454 -8.73603 -8.68380 -8.42653 -7.54185 -6.34412 -4.42684 0.10737 1.66975 1.68511 2.93851 2.94251 3.11702 3.21886 3.25703 3.27641 3.45302 4.00729 4.07470 4.20386 4.22396 4.81339 4.82167 4.85227 4.87347 4.89843 5.00469 5.07122 5.15973 5.18235 5.29935 5.38583 5.63499 5.64359 5.65323 5.68783 5.73912 5.86817 5.89060 6.17783 6.29417 6.56246 6.65461 6.79920 6.93865 7.01779 7.33180 7.58487 7.62277 7.84936 7.94717 8.51681 8.69449 9.25845 10.72358 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.004150 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.424480 B = 6745.152574 C = 9247.445683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.117 3.883 5 C -0.141 4.141 6 C -0.065 4.065 7 C 0.134 3.866 8 N -0.545 5.545 9 C 0.235 3.765 10 C -0.542 4.542 11 H 0.065 0.935 12 C 0.067 3.933 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.548 3.452 19 O -0.548 6.548 20 C -0.641 4.641 21 S 2.452 3.548 22 C -0.664 4.664 23 O -0.928 6.928 24 O -0.931 6.931 25 C -0.081 4.081 26 C -0.199 4.199 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.267 0.733 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -2.358 5.680 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.072 3.928 5 C -0.160 4.160 6 C -0.084 4.084 7 C 0.043 3.957 8 N -0.271 5.271 9 C 0.117 3.883 10 C -0.581 4.581 11 H 0.083 0.917 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.207 1.207 18 C 0.335 3.665 19 O -0.428 6.428 20 C -0.769 4.769 21 S 2.630 3.370 22 C -0.813 4.813 23 O -0.925 6.925 24 O -0.928 6.928 25 C -0.100 4.100 26 C -0.218 4.218 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.176 0.824 38 H 0.189 0.811 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.974 -2.041 6.768 8.643 hybrid contribution 0.991 0.209 -1.913 2.164 sum -3.983 -1.831 4.855 6.541 Atomic orbital electron populations 1.21764 0.93053 1.02597 1.03400 1.22729 0.95565 0.82463 1.01385 1.86046 1.19337 1.28816 1.89146 1.18889 0.81858 0.94129 0.97934 1.20206 0.94527 0.94722 1.06591 1.21066 0.91966 0.98968 0.96440 1.17428 0.83310 0.92702 1.02264 1.45710 1.04752 1.60101 1.16563 1.19672 0.90809 0.96972 0.80851 1.21489 1.34176 0.98355 1.04056 0.91652 1.24931 0.94893 0.96230 0.97581 1.69917 1.33827 1.24421 1.24552 0.86457 0.77979 0.82435 0.80807 1.19411 1.20715 1.20679 1.19076 0.86942 0.77310 0.83157 1.90804 1.66522 1.54052 1.31428 1.30737 1.03775 1.15948 1.26474 1.07113 0.77305 0.75845 0.76721 1.30385 1.26703 1.12040 1.12126 1.93566 1.72922 1.41815 1.84242 1.93558 1.84911 1.60760 1.53619 1.20961 0.94449 0.96462 0.98170 1.20967 0.93593 0.97804 1.09447 0.90596 0.91624 0.91605 0.92094 0.92158 0.85199 0.85216 0.93815 0.93912 0.92376 0.82384 0.81148 0.85094 0.85389 0.85260 0.85567 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.84 16 2 C 0.05 0.57 5.46 37.16 0.20 0.77 16 3 O -0.32 -4.59 10.14 -19.64 -0.20 -4.79 16 4 C 0.12 1.88 6.69 -39.22 -0.26 1.62 16 5 C -0.14 -2.39 9.98 -39.46 -0.39 -2.78 16 6 C -0.06 -1.24 9.54 -39.41 -0.38 -1.62 16 7 C 0.13 2.70 4.76 -83.62 -0.40 2.30 16 8 N -0.54 -11.36 2.51 -114.69 -0.29 -11.65 16 9 C 0.24 5.25 4.88 -5.19 -0.03 5.22 16 10 C -0.54 -13.22 9.16 -34.44 -0.32 -13.54 16 11 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 12 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -23.00 13.29 55.43 0.74 -22.27 16 14 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.55 11.18 7.55 -10.98 -0.08 11.10 16 19 O -0.55 -12.54 15.38 2.54 0.04 -12.50 16 20 C -0.64 -9.96 4.95 36.01 0.18 -9.78 16 21 S 2.45 35.45 4.60 -107.50 -0.49 34.95 16 22 C -0.66 -5.90 10.62 101.05 1.07 -4.83 16 23 O -0.93 -16.91 17.94 -59.53 -1.07 -17.98 16 24 O -0.93 -16.58 17.95 -59.52 -1.07 -17.65 16 25 C -0.08 -1.44 9.67 -39.41 -0.38 -1.82 16 26 C -0.20 -3.10 9.03 -39.46 -0.36 -3.46 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 33 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.04 0.94 6.47 -51.93 -0.34 0.61 16 35 H 0.04 1.02 7.85 -51.93 -0.41 0.61 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 37 H 0.16 2.00 7.26 -51.92 -0.38 1.63 16 38 H 0.17 2.46 7.91 -51.93 -0.41 2.05 16 39 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.13 0.97 8.14 -51.92 -0.42 0.54 16 41 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 43 H 0.13 1.59 6.29 -52.49 -0.33 1.26 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -35.13 380.95 -8.48 -43.61 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.01 Total: 4.12 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.85 Total: -16.09 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.45 Total: -33.91 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -2.30 Total: -52.91 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: 35.45 SS G_CDS: -0.49 Total: 34.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.13 -8.48 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264548152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.583 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds