Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.46940 * 2 1 4 4 C 1.35970 * 116.99991 * 179.97438 * 3 2 1 5 5 C 1.38720 * 119.98740 * 179.97438 * 4 3 2 6 6 C 1.38088 * 120.01867 * 180.02562 * 5 4 3 7 7 C 1.38849 * 119.98133 * 359.97438 * 6 5 4 8 8 N 1.40109 * 120.01360 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99980 * 247.89874 * 8 7 6 10 10 C 1.50700 * 109.46931 * 89.99665 * 9 8 7 11 11 H 1.07989 * 120.00154 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99521 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00166 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99702 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47293 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47132 * 120.00413 * 14 12 10 17 17 H 1.48506 * 109.46873 * 240.00076 * 14 12 10 18 18 C 1.34769 * 120.00216 * 67.89599 * 8 7 6 19 19 O 1.21299 * 120.00104 * 4.73913 * 18 8 7 20 20 C 1.50709 * 120.00150 * 184.74084 * 18 8 7 21 21 S 1.81398 * 109.47034 * 180.02562 * 20 18 8 22 22 C 1.81398 * 101.91864 * 180.02562 * 21 20 18 23 23 O 1.42104 * 108.57735 * 294.48180 * 21 20 18 24 24 O 1.42096 * 108.58315 * 65.50720 * 21 20 18 25 25 C 1.38851 * 119.96994 * 0.26754 * 7 6 5 26 26 C 1.38084 * 119.98564 * 359.47539 * 25 7 6 27 27 H 1.08999 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47356 * 299.99842 * 1 2 3 29 29 H 1.08998 * 109.47143 * 59.99735 * 1 2 3 30 30 H 1.09002 * 109.46887 * 240.00359 * 2 1 3 31 31 H 1.08998 * 109.47143 * 120.00265 * 2 1 3 32 32 H 1.08004 * 119.99127 * 0.03708 * 5 4 3 33 33 H 1.07993 * 120.01090 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.46953 * 210.00159 * 9 8 7 35 35 H 1.09000 * 109.46531 * 329.99706 * 9 8 7 36 36 H 0.96996 * 120.00182 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.46482 * 299.99797 * 20 18 8 38 38 H 1.08994 * 109.47029 * 59.99956 * 20 18 8 39 39 H 1.08996 * 109.47563 * 59.99834 * 22 21 20 40 40 H 1.09007 * 109.46810 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47298 * 299.99564 * 22 21 20 42 42 H 1.08005 * 120.00343 * 179.72406 * 25 7 6 43 43 H 1.08001 * 119.99137 * 180.22996 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 3.8842 2.8075 0.0000 6 6 5.2530 2.9892 0.0001 7 6 6.0991 1.8883 0.0011 8 7 7.4881 2.0719 0.0006 9 6 8.2766 1.6932 -1.1747 10 6 8.3743 2.8679 -2.1137 11 1 7.8972 3.8029 -1.8603 12 6 9.0737 2.7490 -3.2960 13 7 9.6551 1.6104 -3.6044 14 14 9.1954 4.2052 -4.4597 15 1 8.4607 5.3608 -3.8851 16 1 10.6223 4.5705 -4.6480 17 1 8.6002 3.8421 -5.7709 18 6 8.0989 2.5968 1.0812 19 8 7.4599 2.8304 2.0854 20 6 9.5760 2.8936 1.0420 21 16 10.0959 3.5867 2.6356 22 6 11.8683 3.8616 2.3642 23 8 9.4641 4.8477 2.8087 24 8 9.9397 2.5894 3.6357 25 6 5.5681 0.6053 -0.0035 26 6 4.1991 0.4251 0.0019 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.2259 3.6637 -0.0002 33 1 5.6654 3.9873 -0.0008 34 1 9.2768 1.3950 -0.8605 35 1 7.7923 0.8601 -1.6841 36 1 10.1468 1.5266 -4.4363 37 1 10.1265 1.9728 0.8496 38 1 9.7812 3.6122 0.2485 39 1 12.0057 4.5522 1.5323 40 1 12.3123 4.2855 3.2650 41 1 12.3518 2.9127 2.1324 42 1 6.2257 -0.2514 -0.0071 43 1 3.7859 -0.5728 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264548152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -133.803757 kcal Electronic energy + Delta-G solvation = -27765.761397 eV Core-core repulsion = 23710.364992 eV Total energy + Delta-G solvation = -4055.396405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67717 -40.65891 -38.53936 -37.95630 -36.98175 -36.62249 -34.59050 -32.83700 -32.04439 -31.71883 -30.31317 -29.73872 -28.55671 -25.25616 -24.88346 -23.68740 -22.76421 -20.85137 -19.69466 -19.31140 -18.74071 -18.59940 -17.95750 -17.26258 -17.09193 -17.01967 -16.91248 -16.75578 -16.22222 -15.95211 -15.52763 -14.96516 -14.58363 -14.52520 -14.39560 -14.25011 -13.94623 -13.89050 -13.79417 -13.59452 -13.47781 -13.23054 -13.04696 -12.98746 -12.98602 -12.88506 -12.68514 -12.64551 -12.21614 -12.03603 -11.94882 -11.69069 -11.66545 -11.56628 -11.27197 -10.62968 -10.06336 -10.00241 -8.96576 -8.23738 -6.38047 -0.98252 0.29207 0.30315 1.38748 1.39392 1.45955 1.54950 1.85468 1.98447 2.24356 2.38987 2.68009 2.86810 3.06505 3.14766 3.48613 3.77492 3.85071 3.98932 4.08432 4.15503 4.17203 4.25938 4.32528 4.33328 4.38838 4.48043 4.50943 4.65192 4.89365 4.93912 4.96713 4.99611 5.06641 5.10615 5.17938 5.29794 5.43081 5.53439 5.67095 5.83920 5.99432 6.30973 6.42836 6.70655 7.01899 7.33887 8.81936 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.004150 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.424480 B = 6745.152574 C = 9247.445683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 O -0.327 6.327 4 C 0.121 3.879 5 C -0.147 4.147 6 C -0.085 4.085 7 C 0.094 3.906 8 N -0.546 5.546 9 C 0.248 3.752 10 C -0.549 4.549 11 H 0.053 0.947 12 C 0.031 3.969 13 N -0.914 5.914 14 Si 0.950 3.050 15 H -0.274 1.274 16 H -0.269 1.269 17 H -0.284 1.284 18 C 0.533 3.467 19 O -0.582 6.582 20 C -0.645 4.645 21 S 2.447 3.553 22 C -0.625 4.625 23 O -0.979 6.979 24 O -0.975 6.975 25 C -0.091 4.091 26 C -0.190 4.190 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.116 0.884 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.270 0.730 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.135 0.865 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -2.895 5.064 6.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.241 6.241 4 C 0.076 3.924 5 C -0.166 4.166 6 C -0.104 4.104 7 C 0.004 3.996 8 N -0.272 5.272 9 C 0.129 3.871 10 C -0.587 4.587 11 H 0.071 0.929 12 C -0.170 4.170 13 N -0.553 5.553 14 Si 0.776 3.224 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.210 1.210 18 C 0.322 3.678 19 O -0.464 6.464 20 C -0.772 4.772 21 S 2.630 3.370 22 C -0.779 4.779 23 O -0.976 6.976 24 O -0.973 6.973 25 C -0.110 4.110 26 C -0.209 4.209 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.134 0.866 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.204 0.796 38 H 0.198 0.802 39 H 0.175 0.825 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.153 0.847 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.295 -2.597 6.149 7.938 hybrid contribution 0.693 0.320 -1.722 1.884 sum -3.602 -2.277 4.427 6.145 Atomic orbital electron populations 1.21799 0.91134 1.04257 1.03213 1.23134 0.97147 0.80736 1.02404 1.86061 1.17936 1.31488 1.88641 1.18960 0.82968 0.93843 0.96651 1.20388 0.93864 0.96161 1.06197 1.21074 0.93103 0.98319 0.97952 1.17829 0.83288 0.94008 1.04510 1.45709 1.05196 1.60109 1.16192 1.19410 0.91079 0.95627 0.81018 1.21613 1.33905 0.98429 1.04749 0.92893 1.25518 0.94630 0.98207 0.98672 1.69983 1.34451 1.25720 1.25112 0.85617 0.78360 0.79698 0.78716 1.19821 1.19422 1.20960 1.19870 0.88930 0.76556 0.82439 1.90768 1.67916 1.55303 1.32458 1.30852 1.00669 1.17678 1.27952 1.07012 0.80155 0.74154 0.75678 1.30077 1.18646 1.14714 1.14470 1.93500 1.76255 1.43100 1.84721 1.93497 1.86991 1.61685 1.55084 1.21159 0.95722 0.95840 0.98292 1.21291 0.92575 0.99381 1.07680 0.87990 0.91802 0.91827 0.91067 0.91052 0.83537 0.86554 0.92987 0.95786 0.92110 0.79646 0.80154 0.82541 0.82981 0.82131 0.84737 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.75 5.46 71.98 0.39 1.15 16 3 O -0.33 -8.93 10.14 -93.21 -0.94 -9.88 16 4 C 0.12 3.84 6.69 22.50 0.15 3.99 16 5 C -0.15 -5.08 9.98 22.35 0.22 -4.86 16 6 C -0.08 -3.42 9.54 22.38 0.21 -3.21 16 7 C 0.09 3.95 4.76 38.11 0.18 4.14 16 8 N -0.55 -23.63 2.51 -635.14 -1.59 -25.22 16 9 C 0.25 11.26 4.88 85.63 0.42 11.67 16 10 C -0.55 -27.03 9.16 25.60 0.23 -26.80 16 11 H 0.05 2.70 7.81 -2.92 -0.02 2.67 16 12 C 0.03 1.53 5.46 84.66 0.46 1.99 16 13 N -0.91 -46.80 13.29 21.45 0.28 -46.52 16 14 Si 0.95 39.56 29.54 68.60 2.03 41.59 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 16 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 C 0.53 22.59 7.55 87.66 0.66 23.26 16 19 O -0.58 -28.13 15.38 -0.22 0.00 -28.14 16 20 C -0.64 -19.99 4.95 71.24 0.35 -19.64 16 21 S 2.45 70.12 4.60 -56.49 -0.26 69.86 16 22 C -0.62 -8.54 10.62 113.37 1.20 -7.34 16 23 O -0.98 -36.72 17.94 -125.74 -2.26 -38.98 16 24 O -0.98 -35.35 17.95 -125.75 -2.26 -37.60 16 25 C -0.09 -3.27 9.67 22.38 0.22 -3.06 16 26 C -0.19 -5.77 9.03 22.35 0.20 -5.57 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 31 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 32 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 34 H 0.05 2.25 6.47 -2.39 -0.02 2.23 16 35 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 36 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 37 H 0.19 4.50 7.26 -2.39 -0.02 4.49 16 38 H 0.18 5.14 7.91 -2.39 -0.02 5.12 16 39 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 43 H 0.16 3.64 6.29 -2.91 -0.02 3.62 16 Total: -1.00 -79.30 380.95 1.66 -77.63 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.02 Total: 22.84 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 5.65 Total: -25.58 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.31 Total: -71.74 kcal Atomic # 8 Polarization: -109.13 SS G_CDS: -5.46 Total: -114.60 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 16 Polarization: 70.12 SS G_CDS: -0.26 Total: 69.86 kcal Total: -79.30 1.66 -77.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264548152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.172 kcal (2) G-P(sol) polarization free energy of solvation -79.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds